Difference between revisions of "Os03g0174900"
Liming Pan (talk | contribs) |
Liming Pan (talk | contribs) |
||
| Line 1: | Line 1: | ||
| − | The rice '''''Os03g0174900''''' was reported as '''''OsNF- | + | The rice '''''Os03g0174900''''' was reported as '''''OsNF-γA1''''' in 2016 <ref name="ref1" /> by researchers from China. |
==Annotated Information== | ==Annotated Information== | ||
===Gene Symbol=== | ===Gene Symbol=== | ||
| − | *'''''Os03g0174900''''' '''''<=>''''' '''''OsNF- | + | *'''''Os03g0174900''''' '''''<=>''''' '''''OsNF-γA1''''' |
===Function=== | ===Function=== | ||
| − | * Nuclear factor | + | * Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.<ref name="ref1" /> |
| − | * In plants, the roles of NF- | + | * In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.<ref name="ref1" /> <ref name="ref2" /> |
===Expression=== | ===Expression=== | ||
| − | * Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF- | + | * Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.<ref name="ref1" /> |
* Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development. | * Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development. | ||
| − | * Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF- | + | * Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.<ref name="ref1" /> |
===Evolution=== | ===Evolution=== | ||
| − | * NF- | + | * NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC |
(CBF-C/HAP5). | (CBF-C/HAP5). | ||
| − | * NF- | + | * NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the |
| − | expression of target genes | + | expression of target genes<ref name="ref1" /> . |
You can also add sub-section(s) at will. | You can also add sub-section(s) at will. | ||
| Line 27: | Line 27: | ||
<references> | <references> | ||
* <ref name="ref1"> | * <ref name="ref1"> | ||
| − | Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF- | + | Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF-γ gene family in rice. The Crop Journal. |
</ref> | </ref> | ||
* <ref name="ref2"> | * <ref name="ref2"> | ||
Revision as of 11:10, 28 March 2017
The rice Os03g0174900 was reported as OsNF-γA1 in 2016 [1] by researchers from China.
Contents
Annotated Information
Gene Symbol
- Os03g0174900 <=> OsNF-γA1
Function
- Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.[1]
- In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.[1] [2]
Expression
- Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.[1]
- Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development.
- Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.[1]
Evolution
- NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC
(CBF-C/HAP5).
- NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the
expression of target genes[1] .
You can also add sub-section(s) at will.
Labs working on this gene
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF-γ gene family in rice. The Crop Journal.
- ↑ Laloum T, De Mita S, Gamas P, Baudin M, Niebel A. CCAAT-box binding transcription factors in plants: Y so many? Trends Plant Sci. 2013 Mar;18(3):157-66. doi: 10.1016/j.tplants.2012.07.004. Epub 2012 Aug 30. Review. Erratum in: Trends Plant Sci. 2013 Oct;18(10):594-5. PubMed PMID: 22939172.
