Os07g0642800

From RiceWiki
Revision as of 20:40, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0642800

Description

Conserved hypothetical protein

Version

NM_001066973.1 GI:115473678 GeneID:4344078

Length

5743 bp

Definition

Oryza sativa Japonica Group Os07g0642800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:27428534..27434276

Sequence Coding Region

27429934..27430221,27430355..27430483,27430700..27430792,27431318..27431458,27431758..27431826
,27431944..27432027,27432521..27432701,27432792..27432908,27432982..27433040
,27433332..27433466,27433602..27433751,27433907..27433945

Expression

GEO Profiles:Os07g0642800

Genome Context

<gbrowseImage1> name=NC_008400:27428534..27434276 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:27428534..27434276 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgcgggcgtccacaattgatttcgggcggaagacacataatgatgtcctctggtcagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtttgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctgttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttgctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaagagtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagtccctttctatggtggatgttttaacagttcagctgtctaaaagagaagacgagttgctgcagcaaaaggcagaggttgccaaaattgcaacctcattgaaactggcttctgaagatgccaggagaattgttgaagaagaaagatctaacgctcgcatagagatagataatgctagagctgctgtacaaaaagttgaacaattagttaaagagcaagaaattgatcctcaaataaatgggaaacaggatgaggatgaacttaaggaaaaggctcaagaagcacggagagtgaaaatgctgcattgtcccagcaaggcaatggacattgaaaatgagattgaagtcctacgtgaacaattagctgagaagtcctcaaattgtgttcatcttttgaaagagttacacctgcatcaaagctatgaggaaaacgatgtgtcctcgtatgagctggagggccttgaaagcttaggctcaatgttgcgcatagtttcccagagtgatggatatgttgatttatcaagaagtacaatacagtggttccgtgtgcagcctgaaggaaacaagaaagagataatttcaggtgccataaagcaagcatatgctccagaaccacatgatgttgggcggtatttgcaagctgagatcaaccattgcggtgaaatctctgtcgtgaagactgctggccctgtggatcctgctgcaggattggtcgattacgtagagactcttctaaggaatcctgaaactgaatataatgttgttgttcttcaagtgaatggaatcaaacagcctaccgattcaattcatgttctttccatcgggaaactgcggatgagactcgcaaaagggaagacagtaattgcaaaagaattctactcctcaacgatgcagctatgtggtatgagaggcggtggagatgctgcaccccaagcgatgtactggcaaccgaggagagacctgagcctggtgctgggcttcgagacggccagagaacgcaactctgcaatcatgctcgctcgcagatttgccatcgattgcaatatcatacttgctggtcctggggataaaactcactggtga</cdnaseq>

Protein Sequence

<aaseq>MTRASTIDFGRKTHNDVLWSGPLRPANFIRNKFPTYKKSLNGIV IKLTDDQEMPSLKEAVAKETADLLHRSQRLSVRELAMKFEKGLNTATLLSNEVKWRQA ALLERDILLKNLKSVLESLRSRVAGKHKDEIEESLSMVDVLTVQLSKREDELLQQKAE VAKIATSLKLASEDARRIVEEERSNARIEIDNARAAVQKVEQLVKEQEIDPQINGKQD EDELKEKAQEARRVKMLHCPSKAMDIENEIEVLREQLAEKSSNCVHLLKELHLHQSYE ENDVSSYELEGLESLGSMLRIVSQSDGYVDLSRSTIQWFRVQPEGNKKEIISGAIKQA YAPEPHDVGRYLQAEINHCGEISVVKTAGPVDPAAGLVDYVETLLRNPETEYNVVVLQ VNGIKQPTDSIHVLSIGKLRMRLAKGKTVIAKEFYSSTMQLCGMRGGGDAAPQAMYWQ PRRDLSLVLGFETARERNSAIMLARRFAIDCNIILAGPGDKTHW</aaseq>

Gene Sequence

<dnaseqindica>1401..1688#1822..1950#2167..2259#2785..2925#3225..3293#3411..3494#3988..4168#4259..4375#4449..4507#4799..4933#5069..5218#5374..5412#gagaaaagagaggagagagagaggcaaacccgcaccaaaatctctctctctcccccagatttgcgccacattttcctcgccgaatcagcctcgccgccgtgggtgcagctgccgcgggatcccggcgagcgagcgccatttgagccggctgccggcgggtttgcgttctggaagctccttggtaagacctctagctccctctcctgttttctctgtgcgttttttcttttttagtttctctctctctttttcttttgtgtgtgttttttgtttgttcatctttctacttactgcttttgaatggctggacgattgggaggcagattggcagaaggttatattttttttctctctctctgtttattttgctagtatgagtctgctatagtgcattatttgatgaaaatttaagcaaattatatatatttttgaaacaagaattgtataaggaaattagtacggaattgcactcgcatttgcgtggagtggcgaggtggttagcgcaggagtatatactagcaatgatttgccaacgaacctactagaaaacatgtcccgatagtgaattgaattcatgcgcctttacttcagttttaattttcgtacgagtgccgtgtagccagaagcccagaagaactgtgcatgaattgaatagctctgctatgtctaagcttaagtttacccatgaattctgaactgtgttgtttagtttcatttgtaataaaattgcaaaggtctttcagctccaaattatttttgttgttcgcaagattagagtaactactattttttggctgatgccagctacaatgtttgaaaatttccaactgtacttgatgctacctggtgattggttaaccttttgttccccaccgatcactttaatcatacatgaacgtcctttttccctattccactgacaaatttgcactagtagtttatagctttaccatctggtactactaactgtccttcatagtggaatttaagtgtaacaattacttggtctgtagcctccaatacagatttgtaactttgagtttagtgaccagtattgtttatacttcaatacttgcgacgcatgaggtttggttaattggtttggtggtagcacttgtgtgcagctagatgatactatgatatccagcacttattttgtttgaaaccgaccagcacttgcttttgtcttatatttttattatctatggacactgcattttatttgtactctttcctttttatttttttgatggtgttgacttcccctaatgattatggatgcacattttaaacaaactataattatcgagcatttcaactaatgataatttactgtggccagctgtaaactattgaggggtaaagcctgctatttagtcaaggttgagggtgctgtataaatgacgcgggcgtccacaattgatttcgggcggaagacacataatgatgtcctctggtcagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtttgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctgttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttgctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggtatggaacttttacctgttttaggccctgtcctcctgaatgctctttgacgattggcccaatacttgaatgaatggagttatataaatcaaagttgtctatctggcctcaccttgaaatcttgaactctcaggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaagagtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagtccctttctatggtttgtttcttgttatgaaccatattttgatttttcaccaaggattgttgctactcaatttgtaacttttctaatggtgttgctatttatctttaattgtgttgcatgtgttttcaaaagaggctactattctgtccttttttttccctccaagctccatatgcaaaaatggtgccttttctgtgggctgttttaatagtttggtactttctataggtggatgttttaacagttcagctgtctaaaagagaagacgagttgctgcagcaaaaggcagaggttgccaaaattgcaacctcattgaaactggtgcgtccaaaatttcttgtagttcagtagtgtatgcatgctatgaacatcggtcaacatacttttagcatcttgtgacattcacttttggttttttattgttatagcaaaatgtcaggttccattgtttttaagtgttctctgtttcgctaaattgctagtaaggaaagttgagttcttcctatgaacaatatgcagtactaatgaacaatagaatgcttcttatgttgggactgtattatactatggaactgaactattgaagtactagtggtttcccttccaaaatacagagtgaaatttcagtcacatgtaatcacagcttattgaataacacgttttaggacttccacctgatttcctcaatatggttcagatataagcatgctgacaataattactgtttttttaccggcttcttgtagaatcgtgtttaatatcgccttgggtagatctatccattggtataccttcatgtgttcatcccttttcaatcattgcttgtttttctgtattttcatacaggcttctgaagatgccaggagaattgttgaagaagaaagatctaacgctcgcatagagatagataatgctagagctgctgtacaaaaagttgaacaattagttaaagagcaagaaattgatcctcaaataaatgggaaacaggtaggtggtaggaacactatgttcttttattttattgaaataactatgagatatatgcaacattaaacattgatgtatgaagtcataataaatcatttttgttggtagatatcttcttcttgttacatttgttgtcatttcctacatgtcttaggcactttcaaccctaaacccctaatttccagctgcctgtgtcttgtgattcatttatgctaagagagattccatatttagagttcctctagtttcaagctgaattgtacatatctgtttaccatttctttttgaaaccttgttaggatgaggatgaacttaaggaaaaggctcaagaagcacggagagtgaaaatgctgcattgtcccagcaaggtagaatgcacttattatgtcactctacatgtgaaattgcaagcctatgttgcatacttgatcgtatggtattatggtttctaaatgaccaatttcaagtttttaattatcttttaggcaatggacattgaaaatgagattgaagtcctacgtgaacaattagctgagaagtcctcaaattgtgttcatcttttgaaagaggtatggttaacacatgctgattttggcaatttcagttgtcatttctacagtaggccagattgaaaccagctattgcaatatgaatttgcggtgaatcacaccgtgcactgtggagcatgttgaaaacaaaacaccgcaagagctcaccaattctatgtcaaagtttgcgaagatagaatcatatatcaactctgtagcttgctttctttcttttaaacttgtgcaaataagcagaacgatgccaaagagcgtgtagtggtttgttattgctgcttcatgcctacttttactgtcattgtttttctataggagttatcttgctacttggatgatcagccgtaaaagacaaataatagtgtctttagatcgaatcgtttcttttattctatgttgcttctcaaatctgtgaagttcccaacatgaataatttcggtatgtagagatcaagatctggtatttatttccatgcatgattggctgtcctttttatcagttacacctgcatcaaagctatgaggaaaacgatgtgtcctcgtatgagctggagggccttgaaagcttaggctcaatgttgcgcatagtttcccagagtgatggatatgttgatttatcaagaagtacaatacagtggttccgtgtgcagcctgaaggaaacaagaaagagataatttcaggtgaaactatttccatcaagcaaaacgatcttgtttctacatacgatgtaacactgatgactgttgctacttgctaccgatcttctataggtgccataaagcaagcatatgctccagaaccacatgatgttgggcggtatttgcaagctgagatcaaccattgcggtgaaatctctgtcgtgaagactgctggccctgtggatcctggttagttttcctgactggtaacattaatgcgcttttattattatgacatggctaacgttattttgtcgagcagctgcaggattggtcgattacgtagagactcttctaaggaatcctgaaactgaatataatgtaatggttttccttccttatccatttttgtttctgcattatacctacataatttgttataaatcttgctatttactgagtcttgtcagatattttggttttcataatttcccagttggcatgccatctgctgcttttatgtcaagaaatcattctatttggatgcttgtatcaaatattcagtgtcactaaaaataataaaagaactgtgtatttactgctcatgaagtcagctttacccactgttactagtcattctttaaggacacctatttttgccccttatggcaggttgttgttcttcaagtgaatggaatcaaacagcctaccgattcaattcatgttctttccatcgggaaactgcggatgagactcgcaaaagggaagacagtaattgcaaaagaattctactcctcaacgatgcaggtattctaggcaacacttttagcactcataagatggtgtagaaacttgcttccatctcactgatgatagctttcattccacatcattggactatgatatagtctaaaatttgcgttgcattgttgttcatttcagctatgtggtatgagaggcggtggagatgctgcaccccaagcgatgtactggcaaccgaggagagacctgagcctggtgctgggcttcgagacggccagagaacgcaactctgcaatcatgctcgctcgcagatttgccatcgattgcaatgtaagcaacctgtcttggaggaagaaaaaaacaacaagaagttgtcgcactctgttgctccagctcgaggaattttgtttcttccccaacgttttttttggactgtgttgtgcgcaatgatcacggagtaattaactttgcttgtccgaatgcagatcatacttgctggtcctggggataaaactcactggtgattgatgaagacgaactgtaccagctaacctcttgtacgagctcagaccctgtgtttggaatcattgtacatctgtgtcgttgtagttagatactctaatacatatctgatctgtgaggtgtattgtagtgaggggtagtttagtagtagtaggttcgccaaggcatcgtttttactgccttgcgggtcagtctagtttagttggtacattatatttctcatttctgagagagagacacccacgcatgttgtagctgtgtcagtactctagtgtatgtaactttgttcatgaaactgtttaccaaacataatggactatccccctttctgct</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0642800, RefSeq:Os07g0642800