Os07g0679300

From RiceWiki
Revision as of 20:42, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0679300

Description

Similar to Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase)

Version

NM_001067174.1 GI:115474080 GeneID:4344290

Length

4735 bp

Definition

Oryza sativa Japonica Group Os07g0679300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:29424585..29429319

Sequence Coding Region

29424673..29424866,29425020..29425078,29425448..29425504,29425595..29425629,29425860..29425963
,29426062..29426134,29426232..29426290,29426393..29426458,29426552..29426635
,29426732..29426796,29426889..29426969,29427257..29427349,29427813..29427871
,29428469..29428609,29428951..29429058

Expression

GEO Profiles:Os07g0679300

Genome Context

<gbrowseImage1> name=NC_008400:29424585..29429319 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:29424585..29429319 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcgccgcgcctccgcctcccgttcctcctactggtggccctcgtcgtctcgccgccggcggtcgccgcggcggcgagccgaatgcggatcgagcccctccccaccgccgcgctgcgccgcctctacgacacctccaactacggcaagctgcagctcaacaacggcctcgccctcaccccgcagatgggatggaacagctggaatttcttcgcctgcaacatcaacgagacggtcatccgcgacacagctgacgcactagtctcgacggggctggctgatttgggctacaactatgtaaatatcgatgattgttggtccaatgtaaaaagaggaaaaaaggatcaattgctacctgacccaaaaactttcccttctggcatcaaagatcttgcggactatgtgcatgggaaaggtctaaagcttggtatctactctgatgctgggatttttacatgtcaagttcgacctggatcgctccatcatgaaaaggacgatgctgcaatatttgcttcatggggtgttgattacctgaagtatgacaactgctacaatttgggaataaagcccaaggacaggtatcctccaatgcgtgatgctttaaattcaactggacgccaaatattctactctctatgtgaatggggccaggatgatccagccttatgggctggcaaagttggtaacagttggcgcacaacagatgacatacaggatacatggaaaagcatgactgatattgctgataagaataacaagtgggcatcatatgctggacccggtggatggaatgacccggatatgctggaagtcgggaatggtggcatgacctttgcagagtatcgtgcacattttagcatctgggcacttatgaaggcccctctcttaattggttgcgatgtcagaaacatgactaaagaaacaatggaaatattgagcaacaaagaagtaattcaagtaaatcaagatcctcttggagttcaaggaagaagaattttaggtcaagggaaaaatggatgccaagaggtgtgggctggccccctctctggtaaccgtctggctgttgttttatggaaccgctgtgaggagtctgccaatattatagtaaaattgccatctgtaggccttgatggttcatctccctattctgttagagatctgtggaagcatgaaactctatcagagaacgttgttggaacttttggggcgcaagttgacgtgcatgactgcaaaatgtatattttcactcccgccgtcaccgttgcatcaagttga</cdnaseq>

Protein Sequence

<aaseq>MEAPRLRLPFLLLVALVVSPPAVAAAASRMRIEPLPTAALRRLY DTSNYGKLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADLGYNYVN IDDCWSNVKRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTCQVRPGS LHHEKDDAAIFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQ DDPALWAGKVGNSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDMLEVGNGG MTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQGRRIL GQGKNGCQEVWAGPLSGNRLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLWKHE TLSENVVGTFGAQVDVHDCKMYIFTPAVTVASS</aaseq>

Gene Sequence

<dnaseqindica>89..282#436..494#864..920#1011..1045#1276..1379#1478..1550#1648..1706#1809..1874#1968..2051#2148..2212#2305..2385#2673..2765#3229..3287#3885..4025#4367..4474#gcctgcacagctgtttcaacgacggctgctcggaattcggagggagggaggaaggaatcggagtgttcggtaagcttcgcgaagcgggatggaggcgccgcgcctccgcctcccgttcctcctactggtggccctcgtcgtctcgccgccggcggtcgccgcggcggcgagccgaatgcggatcgagcccctccccaccgccgcgctgcgccgcctctacgacacctccaactacggcaagctgcagctcaacaacggcctcgccctcaccccgcagatggggtaagttcaatcaatcggcccaatgcttcgcctcttcgcttcgttccccttccgctgctgctttgtccagcgcctgttgcgtgcgcgtgtaattcatcgtcgttcactgcgttgagtgcgtgatttattagtgcctgtggttctgtggcgcagatggaacagctggaatttcttcgcctgcaacatcaacgagacggtcatccgcgacacaggttcagccgcgggatccccttaattttcatggttaaatctgcaattctgcaccgcagttttttttttcctcccctgatatggtggaagtccttgtctgaactggaaattggaggatacatatttccttaattagtgttgtatcttccacacttccactgctcagagtgcaatgatagaatagaacactgttgaggttggatattggaatggaattgttactacccactgttcaagtgacatgttctcatgtcgtgtttggttataacaattgacaagttcctaatgcgttttcggttgttcagacttaagagtagagtttggttagccatgtacttctaatgaaagttttcttctatctgatgaaacagctgacgcactagtctcgacggggctggctgatttgggctacaactatgtaaatatcggtacattacttggctcaagagttatatattactggctgaagcaagtatgttgttatcctctaatttacttgctgttcattgccttttcagatgattgttggtccaatgtaaaaagaggaaaaaaggtaatgcatttcatttgctaatttaggctgtgatttctccaattactttgttcctaaatatgtcaatgctttggtcttttgataattttaacgagcttggacaggacgtcactcagaacagtcttctttggttgtactgatacaaatacaaatgcattactgaccatataaatacatgcattacaagtttacctctttagtttttaatacattgtttcctgtgcatgtaggatcaattgctacctgacccaaaaactttcccttctggcatcaaagatcttgcggactatgtgcatgggaaaggtctaaagcttggtatctactctgatgctgggtgagtaagcagccctctatagatggtttttgttgttaatacaccatgaagaataatattccaaataactaaaaattataacaagctaaagctttcaggatttttacatgtcaagttcgacctggatcgctccatcatgaaaaggacgatgctgcaatatttgcttcatgggtatgagctagaagcaataaattattgatttgaaatactacacagtatgaacatgttaagatttaagagcatattctatggaaattgatttctccagggtgttgattacctgaagtatgacaactgctacaatttgggaataaagcccaaggacaggtaaactaaatgtcttctcattgtgtaagcctctttcatgagtacagttatgtgaactgaatataacgcattaaaattcgtttcatggtgtcatattcttaggtatcctccaatgcgtgatgctttaaattcaactggacgccaaatattctactctctatgtgaatggtatgcacctttatcatacgagagaagctaggggttgtatatcatgttggtttagatgtatatgatgtgctattatactattttttctcttaggggccaggatgatccagccttatgggctggcaaagttggtaacagttggcgcacaacagatgacatacaggatacatggaaaaggtgattcatgtatttcgggttaagtgtttggggttgggtgaaacctatctatacattgatgtgaagctgacttgtgatcttctgtttgaaaacaagcatgactgatattgctgataagaataacaagtgggcatcatatgctggacccggtggatggaatggtaactgtgtagcaaagagcacaagttttccaccagttttcatactgcaagagaacactcgtactatcattcaactgacttttttttatcagacccggatatgctggaagtcgggaatggtggcatgacctttgcagagtatcgtgcacattttagcatctgggcacttatgaaggcaagtactcattgggtgcattctgtaatcactaggatggcacctatattccagtatgttgcatttggtcttcatgactccaacttatttgtgctgttactggatcaagtagtgaaaagggtttctgaaaagaaaaaaaggagttagtttcttttcaagtgtttttccttgtccttatattttatgctacttgacgttaggggaatttcagtaccgttctgtggatagaagtgtagcgcaaatgatgtgatttaaaattatttggctcctgcattattatatttcaggcccctctcttaattggttgcgatgtcagaaacatgactaaagaaacaatggaaatattgagcaacaaagaagtaattcaagtaaatcaaggtattacactgaatcttttttgtttgcgctctctattatgttgacatgtgtaaacttcaagatagttttctattaaaccattctattatttctacaatgtcattgttctcaaagatcatgaatggcattaaaactttgaaagcgaatttgatttcagcagcaaaactttcatcatgcactaagacaattagcatcatagttgctctttggaattcagttttctgcatatcatgtatattttttgaacaagatgcttgaaccaatggacctgagagctcgcaagtttcccttgctttgttccacctgaggacaggaaaaaactgtacagaactaattacgctacatattgtaaatatctgttttagagtagattattttattcgaacaaatttttttttctccttgtatatgctgttgtaataattaattaacacgttaaactgcactcattcgttttctgcagatcctcttggagttcaaggaagaagaattttaggtcaagggaaaaatggatgccaagaggtgatatacatgtccattagtaattatagtatgcaaatataattattactgtgtggtctgccctgatggtttacttccacagtcctttttttcttttccaaaattgcaagacactaactataacagttttgtgcatgagcaatttacacacacaatagtatagcaactgttttaatttgatattgaacagagcatgtttttgtaacatatttgatatttccccaacttgcctaactctagagtccatcgaaatttcatagggacggtagcagccaccccactagctggtgatgggttttcctatgacatccctttgagaatcctgttcagacagggccttgtatgctagttagaagctacttggggtagataatagacttgtagtgttcgggcattgttcagttggaactgcagttctgccatcttaatcatatactcatttgggccgtcggagcatgaataacgcatgcaaccacactaacagcttgagcttttagaatagattagctgctgtgtggaattaaactattacaaatgcatgtttgtgaagttcttcacatcagggcattccttttcactgatatatcatgtttgcaggtgtgggctggccccctctctggtaaccgtctggctgttgttttatggaaccgctgtgaggagtctgccaatattatagtaaaattgccatctgtaggccttgatggttcatctccctattctgttagagatctgtggaaggtaagttaaataatttccggtttaagtggttcaatttacctctgtttcccgttgaaacaagagaggagtggagaaaacaaaggggttaaaatggtgttgcttatcatattaaactatttgggggagagagaggagaaaaatggtcaccacatatatccttttcatccaaccaccaaaacgtgtagcaaattaacatcatagaataagcatgagcatagtgtagtatctactgacgcaacaaagacagatcaaagtttatcaagattccattgtcaaaaccttatcttgtcagcattttgtttattatatgttaactgcattctgaatctgcatttttgcagcatgaaactctatcagagaacgttgttggaacttttggggcgcaagttgacgtgcatgactgcaaaatgtatattttcactcccgccgtcaccgttgcatcaagttgatcatgaagagcatcatgcctgatgctttcctggaagcacccagtatctactcaaattagacctgatgaatcgtccaccattttggtcgaggcaacaggtctactgaaatttgctttgtggagaatgcagttttcccgtttctatggggaagttcgtgcaagcaaaccacgtaaggtttttcttgcaagcttgtggtgtaaatttattggtggcttgacgccgtttgctgtacaggatgcaaataaataatttattctgtcc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0679300, RefSeq:Os07g0679300