Os06g0187900

From RiceWiki
Revision as of 20:19, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0187900

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001063553.1 GI:115466837 GeneID:4340353

Length

3603 bp

Definition

Oryza sativa Japonica Group Os06g0187900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:4427679..4431281

Sequence Coding Region

4428013..4428101,4428834..4428922,4429403..4429637,4430076..4430198,4430308..4430329

Expression

GEO Profiles:Os06g0187900

Genome Context

<gbrowseImage1> name=NC_008399:4427679..4431281 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:4427679..4431281 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccgcgtgtacgtcggaaacctggatccccgcgtgacggcgcgggagctcgaggacgagttccgcgtctttggagttcttcggagtgtatgggtcgcaagaaagccaccaggttttgcattcattgattttgatgacaggagggatgctcaggatgcaattcgtgatatagatggcaagaatggatggagagttgagctgtctcgtaatgcaagcagtggtcgtggtggccgtgatcgatatggtagctctgagagcaagtgttatgaatgtggtgagactgggcactttgctcgtgaatgccgtttgaggattggttccgggggtctaggcagtggaaggcgtcgtagcaggagccgcagccgcagccgaagtcccaggtaccgcaggagtccaagctatggcagaagaagttacagccctgcagggcgctctccaaggcgtcgtagtgtgtcaccggctcgtgcacgcagctatagcaggtcaccacaatacaaccgtggccgtgatgaatctcctgcctatgataacggatatcgccgcagcagaagttag</cdnaseq>

Protein Sequence

<aaseq>MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFID FDDRRDAQDAIRDIDGKNGWRVELSRNASSGRGGRDRYGSSESKCYECGETGHFAREC RLRIGSGGLGSGRRRSRSRSRSRSPRYRRSPSYGRRSYSPAGRSPRRRSVSPARARSY SRSPQYNRGRDESPAYDNGYRRSRS</aaseq>

Gene Sequence

<dnaseqindica>335..423#1156..1244#1725..1959#2398..2520#2630..2651#atctcgggatctcgcccacccaccactccaccccctctcctctccgtgcgccgccgcagaattcctcgccgccgccgccgccgccgccgccgtgaggtccatcgagatcgcgaccggagcaggtgggtgatccgctcccgcctctcgcctcccccctcttacctcccctccttcgtgatttccccggtcccaaaccctagatccgccgcacggccccttgcgggattagatctatcggtctcggggggcaggtctctacgtcgtttttgtgattcgttgtttaatccgattgtatttttgttttcttttggcgatttgataggtgcaggttgcgatggcccgcgtgtacgtcggaaacctggatccccgcgtgacggcgcgggagctcgaggacgagttccgcgtctttggagttcttcggaggttagtgactcgccccacctgtggtatgtattgtgtgcgattgtttcggttttctgctagagctgcgtgcgcatgtggaatcatatgggggaacatagctttagcccaccatcggaacagcaaaactcgttctagggccagggcctgagtgacctatgcagccacatttatgtaacttttggggaagacgattggccataccagcagtgcacggtgaaattttaaatgttgtaggcttttctgaaatcctgttccgaccctagtagattttactgtaatagaagaggtagagagggaatttgatggattcattttactcaagattatcttattacaagtcgttatttatttatttattttgagatgtattgatctttctagagcacaattacttcccagctatggcatccaggctttagattgcagtgtacccatctacctgacatcaatggcctccaaccaaacactagacttcaagcaccttggattagattttatcaggatacaaattcaactcattcagatatctacaacacttatttggctaatttactgtatgctggagatgcttttacggtttttctgttgcctaactttttcttattttcttgatgtgctgccaataagtttcttacctgaggccatgtatttgtattttgcacccacaattcaaattatgtttgatgctgattgtcctgatgcagtttgcttatttttgttttgtgcaagcagtgtatgggtcgcaagaaagccaccaggttttgcattcattgattttgatgacaggagggatgctcaggatgcaattcgtgatatagatggtatgtgaatgcttttatgagaacatagcctctgtcagttggatctatcacctctgagaatctttctgctctgattttcttttggtgagttacagggtggtctttgcttgcaaaaatatcttgtgaaagttaaacttctttcaaaggccatgatatatgcctattagtgacaacatgtgttaccattatatctatactttgttttagtaccagaattatgtgaatgtgatgtggcctgctgtttagattatgcttttcctcccagtccctctctctcatccaccaaaacacctccttgcactgttatgttagagcaatttcatgtttgtgcattaatcacttggacgtataagctgtttggacattgtcaagagggtcaagatcctacatttatgggggaagtggggtgaggcgataaggcgtaaaacaaacagtagtgacaactctgaatttctaatttttaaatggcttcttttataggcaagaatggatggagagttgagctgtctcgtaatgcaagcagtggtcgtggtggccgtgatcgatatggtagctctgagagcaagtgttatgaatgtggtgagactgggcactttgctcgtgaatgccgtttgaggattggttccgggggtctaggcagtggaaggcgtcgtagcaggagccgcagccgcagccgaagtcccaggtaccgcaggagtccaagctatggcagaaggtaatcaaaatgtcaaataactgttacactgttgcaatagttaaaagctttttgttactataagttaatggtcacaataccattgttgggactgttggttctgctatggatgtgaagtgttagtggtttgcaaccctactcactctttgatacaactaagttatctttctgtattcattgtaaaacattatatgacatgcacacaatttgttaatttagggttgcctatggtccaaatttacaaacactaagataaagcttgcaattttttctattcagtatttatccacctgttgccatttcccaacatctaggatagtaagtgctagcaaagaatagtgtagcatttatgccctgttttgtgtatgtaactagtatatttacacgaagaagaataacatatctgataatgttataaatgatttgctatgtgagcagaagttacagccctgcagggcgctctccaaggcgtcgtagtgtgtcaccggctcgtgcacgcagctatagcaggtcaccacaatacaaccgtggccgtgatgaatctcctgcctatgataacgggtaatgcagatttcagtaagcagttgtcattttactgtttctaactgagttaaccattttcatcgttcgctcttcgacaatctctaatatgttccatttatggtgtcagatatcgccgcagcagaagttagagctgaacctgatgtctaaagactgctgttacaaatgttactttgtgggttgtcagctatgaacaatgccctactccaaatatcatcatcaactctggactttgattaaggttctcataacttatctaccttattatgctttgtgtttgaagttatattactcgagaaacttatgattggatgtgtattcaactaagttcaactgtctttctgtgtgtcaataaggcatcggcctgcactgcttaaacgactcggccgactacggctaccagttatatcttcgtggttgtgttcttcgctcttcattctacgcgcgccctcgcctgcttcatgcaaacgtcatacagccccattagttgctgcctacaacacctcttcgtgatccatatacttcgttgaagatgctgctcatcagaaaacagtaatcgccttcttttatcgtaataaaaatttggtcatattgtcttcggaacaacagtaagtgcagcatctggaagtattggtgaaacaaagttcttcgtaggcatagactccagaaaatgaatctgcaatccgaggagctgcagtattcagttggatgatttacacccctgcccagtccgtcacgccttgtggcaggtaaatgaggtcaccagaggagtgctttttgacaaggccgatttcagctcagcaagcactgtatctgtgcaagcctgcttaagattttgttggatgcagccagaggttttgctctccatgatcttccttctgcactcgctcagcctgcctcagcctaccctgcgtgctgccgtctagccaagagccttcgccaccactgcttccccgacgtcgccttcgtttccattgcttccccgacgtttgatttcatttgcttagcatttgttcgtcaaattaatgtggtgaatggttatttcttagggatctacgggtgaaaaatgccagatgttattct</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0187900, RefSeq:Os06g0187900