Os06g0561800

From RiceWiki
Revision as of 20:24, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0561800

Description

Similar to Multidrug resistance associated protein 1

Version

NM_001187920.1 GI:297724970 GeneID:9267441

Length

5538 bp

Definition

Oryza sativa Japonica Group Os06g0561800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:22415701..22421238

Sequence Coding Region

22415701..22416011,22416092..22417178,22417795..22418017,22418109..22418179,22418208..22418879
,22418991..22419060,22419293..22419568,22419739..22419953,22420047..22420352
,22420573..22420636,22420725..22420964,22421129..22421238

Expression

GEO Profiles:Os06g0561800

Genome Context

<gbrowseImage1> name=NC_008399:22415701..22421238 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:22415701..22421238 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccggccggagcggcgagaacggcggcgccggcggcggcgacctgtcggagcctctgctcggcaaggaggcgcctcgccggtactcggagctgtacggcgccggcgtgctcagccggctgtccttctcgtggctgaacccgctgctccgcctcggccgctccaaggcgctcgacctcgccgacgtcccgctcatcgcctccgaggacggcgcggcgcgcgcgtcggagaggttcgccgaggcatggagcctccacggccatggcaaggacggcggcggtggcggccgcctcgtcggcgtgctgctcagcagccacaaggcagaggaggaggagcgccgggacctcgccgccgccggcgcatcggcggcggtggcgctggtcggctcgctgctggcgatcaagctcgccgagtcgctgtcgcagcggcactggttcttcagctcgcggcggacggggatgcgcgtccggtcggcgctgatggcggccgtgttccggaagcagctccggctgtcggcgcgcgcgcggcggcgccactccgccggcgaggtcgtcggctacgtcgccgtcgacgcgtaccgcctcggcgacgccgtcagctggctccacacgtcgtggagctcgccgctgcagctcgccctcgccgtcgccaccctcctctgggcgctccgcctcggcgcgctcccgggcctcgtgcccctcgtcgccttcggcttcctcaacgtgccgttcgccagggccctccagggctaccagtccaggttcatggcggcgcaggacggccggctccggtcgacgtcggaggccctcgccggcatgagggccatcaagctccagtcatgggagggcgcgttccggcgagccgtcgagtcgcgcctcggcggcgagttcgcgtggctgagggaggcgcagctgaagaaggcctacggcgccgtgctctactgggcggcgcccaccgtggtgtccgccgtcatgttcgccgccacggccgccgccggcagcgcgccgctcgacgccggcacggtgttcaccgcgctcgccgcgctcagggccatgtcggagccggtgaggatgctgccggaggccatgacgatgatgatccagtacaaggtgtcgctggaacgcatcgggaggttcctcgccgaggaggagatcaaacaggacgacgtgacgagagcggcgacgacgacgacgacgacgaagaattcggatgcgggaatcatccatgtccaggatggaagcttcagctggagtgggagtgaagctgagctgacactgaagaatgctcacctcagcattcgcagaggggagaaggtggcagtttgtggcccggttggctcagggaaatcttcactcctctgtgcattgcttggggagatacctagaacatcaggaatgagtggcactgttcgcgacaacatcctcttcgggaagcccttcgagaacttcgaccatggagacctgacagagatcggccagagaggaatcaacatgagcggtggtcagaagcagaggattcagctggccagagccgtgtacagtgatgcagatgtgtacctcctagatgatcctttcagcgcggtcgatgcgcacaccgctgcggttctgttctatgtaagagcactttcagagaagactgtagttcttgtgactcaccaggttgaatttctcaccgagactgatcggattctgccatatcaaagggtatcaaagatccttcagatgaatgatctgccattgtttcaacaggtaatggaagatggttatgtcaaacaacaaggtgtttacgcagagctaatggaatccgggacagcatttgagaagcttgtctcagctcacaagtcctcaatcacagcattggatgattccagccagcaaagccaagtccaggagcaaaatgtgactgatgaaaatacatcaggacaaccttctgcaaaatacatcagtgatattgattcaatctctgcaaaaggccaaccttctgcaacccagctcacagaagaggaagaaaaggagattggagaccttggatggaagccatataaggactacatcaatgtgtccaagggaatcacacatctctgtgtgatgggtgttactcaggtgctcttcacatccttccagatgatggccacattctggctggcagtggctgtccagatgaacgtcagtagtgctctcctggtaggggcatattcagggctgtccatcttgagctgctgctttgcctatatcagaaccctttatgcagctaagttggggctcaaggcctccaaagcattctttaccggcctaatggattctgtgttcaaggcccccatgtctttctttgattcaacaccggttggaagaatcttgacaagggcatcttcagatttaagcatcctggactttgacataccttactccgtggcttatgtcgtcgttggcgctacaagagatctagcaagaatcaatggaacaacaaaggcaccagtcatgaactatgcggcggaatcaattcttgctgtggtgaccatcaggtcttttggggaaacagacaggttcatccgcaataacctacttcttatcgataccgacgcgacattgttcttccacacagttgcggcgcaagagtgggttctcataagagtagaagcactgcagagcctgacactactaacagcagcactgctccttgttttggctcctccaggagcagtctcaccaggctttgcgggtctcagcctctcctttgctttgtcgctgacagcagttcaggttttcctgacaaagttctactcctacatggaaaactatattatttcagttgagagaataaagcagtatatgcaccttccaccagagcctccagccattataccagagaatagggctccaagttcatggccacaggagggacaaattgacctgcaagatctcaaggtcagataccgcccaaacatgcctcttgtcctcaaaggaatcacttgcacatttcctgctggaaacaaaattggggttgtagggagaacgggaagtgggaaatcgacactcatcagctcattgttccgcctcgttgatcctgcgggtgggaggatactcattgacaacttggatatcagctctattggtctcaaggatctaagaacaaaactgagcattatcccccaagaacctacacttttcagaggaactgtgcgcaacaacttggatcctcttggtctgcattccgatgaagagatatgggaggccttggagaagtgtcaactacagacagccattcgcagcacacctgctcttcttgatacagtagtgagtgatgatggcagtaactggagtgttgggcagcggcagctcttctgtcttggcagagttctcctccgtaggaacaagattcttgtgttagatgaagcaacggcatccatcgactccgcaactgatgcaatcattcagagggtcatcaggcagcaattctcaagttgcactgtggtaactatcgctcacagggttccaactgtaacagacagtgacaaggtcatggtactttcatatgggaagcttatagaatatgacacgcccgccaagttgttggaagataaacaaacagcctttgctaaacttgtggctgaatattgggctaattccaagcggaatgcaacatga</cdnaseq>

Protein Sequence

<aaseq>MAGRSGENGGAGGGDLSEPLLGKEAPRRYSELYGAGVLSRLSFS WLNPLLRLGRSKALDLADVPLIASEDGAARASERFAEAWSLHGHGKDGGGGGRLVGVL LSSHKAEEEERRDLAAAGASAAVALVGSLLAIKLAESLSQRHWFFSSRRTGMRVRSAL MAAVFRKQLRLSARARRRHSAGEVVGYVAVDAYRLGDAVSWLHTSWSSPLQLALAVAT LLWALRLGALPGLVPLVAFGFLNVPFARALQGYQSRFMAAQDGRLRSTSEALAGMRAI KLQSWEGAFRRAVESRLGGEFAWLREAQLKKAYGAVLYWAAPTVVSAVMFAATAAAGS APLDAGTVFTALAALRAMSEPVRMLPEAMTMMIQYKVSLERIGRFLAEEEIKQDDVTR AATTTTTTKNSDAGIIHVQDGSFSWSGSEAELTLKNAHLSIRRGEKVAVCGPVGSGKS SLLCALLGEIPRTSGMSGTVRDNILFGKPFENFDHGDLTEIGQRGINMSGGQKQRIQL ARAVYSDADVYLLDDPFSAVDAHTAAVLFYVRALSEKTVVLVTHQVEFLTETDRILPY QRVSKILQMNDLPLFQQVMEDGYVKQQGVYAELMESGTAFEKLVSAHKSSITALDDSS QQSQVQEQNVTDENTSGQPSAKYISDIDSISAKGQPSATQLTEEEEKEIGDLGWKPYK DYINVSKGITHLCVMGVTQVLFTSFQMMATFWLAVAVQMNVSSALLVGAYSGLSILSC CFAYIRTLYAAKLGLKASKAFFTGLMDSVFKAPMSFFDSTPVGRILTRASSDLSILDF DIPYSVAYVVVGATRDLARINGTTKAPVMNYAAESILAVVTIRSFGETDRFIRNNLLL IDTDATLFFHTVAAQEWVLIRVEALQSLTLLTAALLLVLAPPGAVSPGFAGLSLSFAL SLTAVQVFLTKFYSYMENYIISVERIKQYMHLPPEPPAIIPENRAPSSWPQEGQIDLQ DLKVRYRPNMPLVLKGITCTFPAGNKIGVVGRTGSGKSTLISSLFRLVDPAGGRILID NLDISSIGLKDLRTKLSIIPQEPTLFRGTVRNNLDPLGLHSDEEIWEALEKCQLQTAI RSTPALLDTVVSDDGSNWSVGQRQLFCLGRVLLRRNKILVLDEATASIDSATDAIIQR VIRQQFSSCTVVTIAHRVPTVTDSDKVMVLSYGKLIEYDTPAKLLEDKQTAFAKLVAE YWANSKRNAT</aaseq>

Gene Sequence

<dnaseqindica>1..311#392..1478#2095..2317#2409..2479#2508..3179#3291..3360#3593..3868#4039..4253#4347..4652#4873..4936#5025..5264#5429..5538#atggccggccggagcggcgagaacggcggcgccggcggcggcgacctgtcggagcctctgctcggcaaggaggcgcctcgccggtactcggagctgtacggcgccggcgtgctcagccggctgtccttctcgtggctgaacccgctgctccgcctcggccgctccaaggcgctcgacctcgccgacgtcccgctcatcgcctccgaggacggcgcggcgcgcgcgtcggagaggttcgccgaggcatggagcctccacggccatggcaaggacggcggcggtggcggccgcctcgtcggcgtgctgctcaggtgcttcctcggggagatcatgctcaccggcttctacgcgctcgtcaagacgctggccatcgccgtgtcgtccggtacagcagccacaaggcagaggaggaggagcgccgggacctcgccgccgccggcgcatcggcggcggtggcgctggtcggctcgctgctggcgatcaagctcgccgagtcgctgtcgcagcggcactggttcttcagctcgcggcggacggggatgcgcgtccggtcggcgctgatggcggccgtgttccggaagcagctccggctgtcggcgcgcgcgcggcggcgccactccgccggcgaggtcgtcggctacgtcgccgtcgacgcgtaccgcctcggcgacgccgtcagctggctccacacgtcgtggagctcgccgctgcagctcgccctcgccgtcgccaccctcctctgggcgctccgcctcggcgcgctcccgggcctcgtgcccctcgtcgccttcggcttcctcaacgtgccgttcgccagggccctccagggctaccagtccaggttcatggcggcgcaggacggccggctccggtcgacgtcggaggccctcgccggcatgagggccatcaagctccagtcatgggagggcgcgttccggcgagccgtcgagtcgcgcctcggcggcgagttcgcgtggctgagggaggcgcagctgaagaaggcctacggcgccgtgctctactgggcggcgcccaccgtggtgtccgccgtcatgttcgccgccacggccgccgccggcagcgcgccgctcgacgccggcacggtgttcaccgcgctcgccgcgctcagggccatgtcggagccggtgaggatgctgccggaggccatgacgatgatgatccagtacaaggtgtcgctggaacgcatcgggaggttcctcgccgaggaggagatcaaacaggacgacgtgacgagagcggcgacgacgacgacgacgacgaagaattcggatgcgggaatcatccatgtccaggatggaagcttcagctggagtgggagtgaagctgagctgacactgaagaatgctcacctcagcattcgcagaggggagaaggtggcagtttgtggcccggttggctcagggaaatcttcactcctctgtgcattgcttggggagatacctagaacatcaggaatggtaagtgatagaaaaaatgagatgaattttgaagaaaaaagaacagcttttcgcatacagattgaatcatcatgttctttagttttgtaatccaagtagttcatagcaaattcagaaaaaaaaaatgatgtgtcctctttcctttcacaaacatacaaaatcaaatcccatcttcatatatagatttttttttcttcaaaattaagtaaaactttacatccaattttgacttcaaaaagaaaatattttccttttgtaatccaagtttgaatttagtttgactgatgacattataatctagtatttaaaatctgttcataatttctcataattatttagatttcatgcaaaaacaatagggcattatcactaaaaactttctactttcccctgaaaaaagactcaagataatcttcgactctatatttatctcctttcttttcattttaccatgaaaggagaaaacacaagattgtcttgtcatgttcatatacaaaaaaaaaaatgacaatgacaaatctatgttttctaaaatatgaacatgacaaaactacaatcaattttcaggtggagttgtatggcacagtggcgtatgtttcccagaactcatggatagagtggcactgttcgcgacaacatcctcttcgggaagcccttcgagaacttcgaccatggagacctgacagagatcggccagagaggaatcaacatgagcggtggtcagaagcagaggattcagctggccagagccgtgtacagtgatgcagatgtgtacctcctagatgatcctttcagcgcggtcgatgcgcacaccgctgcggttctgttctatgtaagaggtgctccttgacctgcatccatggatgcactccctgatgaaaaaaaagttctaatcagtggcaatgttcttgctggattgtgtaatgacagcactttcagagaagactgtagttcttgtgactcaccaggttgaatttctcaccgagactgatcggattctggtaagttgatcttcagactatcatttagccatatcaaagggtatcaaagatccttcagatgaatgatctgccattgtttcaacaggtaatggaagatggttatgtcaaacaacaaggtgtttacgcagagctaatggaatccgggacagcatttgagaagcttgtctcagctcacaagtcctcaatcacagcattggatgattccagccagcaaagccaagtccaggagcaaaatgtgactgatgaaaatacatcaggacaaccttctgcaaaatacatcagtgatattgattcaatctctgcaaaaggccaaccttctgcaacccagctcacagaagaggaagaaaaggagattggagaccttggatggaagccatataaggactacatcaatgtgtccaagggaatcacacatctctgtgtgatgggtgttactcaggtgctcttcacatccttccagatgatggccacattctggctggcagtggctgtccagatgaacgtcagtagtgctctcctggtaggggcatattcagggctgtccatcttgagctgctgctttgcctatatcagaaccctttatgcagctaagttggggctcaaggcctccaaagcattctttaccggcctaatggattctgtgttcaaggcccccatgtctttctttgattcaacaccggttggaagaatcttgacaagggtatggacttcaaaataagatcataagagctaacctttagattctccatgaacaattattataggtcaagtggttgctagtacctgactgtagcccttttattctctgcaggcatcttcagatttaagcatcctggactttgacataccttactccgtggcttatgtcgtcgttggcgctagtgagctcatcacaacaatactggttacaggggctgtaacttggcaagttctaattgtagcaatcccagttacaattactgtggcatatgttcaggtcagtcccctaattgctgcaaacaactaccatcgttaattaaaccagtagatgaataaatagatcaaatgttaccttctgaactcaagatctcacgtttgttttaaaacctttgacgaggcactacgtggcctcagcaagagatctagcaagaatcaatggaacaacaaaggcaccagtcatgaactatgcggcggaatcaattcttgctgtggtgaccatcaggtcttttggggaaacagacaggttcatccgcaataacctacttcttatcgataccgacgcgacattgttcttccacacagttgcggcgcaagagtgggttctcataagagtagaagcactgcagagcctgacactactaacagcagcactgctccttgttttggctcctccaggagcagtctcaccaggtatgtatgtacataagccattacaccttaacatgttcatcttacaatggtattttcagtatgctgaacaatgaacgcttccagtttttttttttagataatggattaattaaaacccggcctctacatccaacaaggatgtataacacttccaatgttaacttttccaggctttgcgggtctcagcctctcctttgctttgtcgctgacagcagttcaggttttcctgacaaagttctactcctacatggaaaactatattatttcagttgagagaataaagcagtatatgcaccttccaccagagcctccagccattataccagagaatagggctccaagttcatggccacaggagggacaaattgacctgcaagatctcaaggtaaaactacagtaagttgctttcaatagagaaggccacagaacatttttaaaaaatgtttgcagtaacttacacacttatacttatgagcaggtcagataccgcccaaacatgcctcttgtcctcaaaggaatcacttgcacatttcctgctggaaacaaaattggggttgtagggagaacgggaagtgggaaatcgacactcatcagctcattgttccgcctcgttgatcctgcgggtgggaggatactcattgacaacttggatatcagctctattggtctcaaggatctaagaacaaaactgagcattatcccccaagaacctacacttttcagaggaactgtgcgcaacaacttggatcctcttggtctgcattccgatgaagagatatgggaggtaagaaaaattacatttgtgcaaaactcagatataagacgtgataaaaatcttacacaatagtgcggtttctaatagaatcactttacaaaaatcttctcaaaacataagcaatagaagaacttgagctcaatcatgatcctgaacttaaccagactggtacctttgtttagaccaaaatggtttcatgaattgattaaactaacactgaacgtttcaggccttggagaagtgtcaactacagacagccattcgcagcacacctgctcttcttgatacagtaggtaagtgacatcaatttcagaggaaaaaagttaccatgcaaaatatttttagaaatctcaaacaatttgttcatttggccaattgtagtgagtgatgatggcagtaactggagtgttgggcagcggcagctcttctgtcttggcagagttctcctccgtaggaacaagattcttgtgttagatgaagcaacggcatccatcgactccgcaactgatgcaatcattcagagggtcatcaggcagcaattctcaagttgcactgtggtaactatcgctcacagggttccaactgtaacagacagtgacaaggtcatggtactttcatatggtaagttactacacacacgcatatcaatctgaatatctgaggaaggttctggtccagtcatcgctcatccgaaccttcctctgatggccctgtcatccaaactgcacatatataaactgcacatatttggatgattcaagctgatggcccttctgtttgtgcagggaagcttatagaatatgacacgcccgccaagttgttggaagataaacaaacagcctttgctaaacttgtggctgaatattgggctaattccaagcggaatgcaacatga</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0561800, RefSeq:Os06g0561800