Os06g0707100

From RiceWiki
Revision as of 20:28, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0707100

Description

Multi antimicrobial extrusion protein MatE family protein

Version

NM_001065059.1 GI:115469849 GeneID:4342011

Length

7464 bp

Definition

Oryza sativa Japonica Group Os06g0707100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:30754101..30761564

Sequence Coding Region

30754151..30754405,30754806..30755356,30755488..30755574,30755813..30755869,30755972..30756210
,30757093..30757211,30757300..30757386,30758414..30758470

Expression

GEO Profiles:Os06g0707100

Genome Context

<gbrowseImage1> name=NC_008399:30754101..30761564 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:30754101..30761564 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcggcggcggcggcgaggtcgaggcggcggcggaggcggcccctctcctcgtcccccacgaccctcagccggcggtgggggcggaggtgcggaggcaggtggggctcgcggcgccgctggtggcgtgtagccttctgcagtacagcttgcaggtggtctccgtcatgttcgccggacatctcggcgagctctccctctccggcgcctccgtcgcctcctccttcgccaacgtcaccggcttcagcgtcctgctgggaatgggaagcgcgctggatacattctgtggacaatcatatggagcaaaacaatatgatatgcttgggacacatgcgcaaagggctatctttgttcttatgcttatgggtgtcccgctggcttttgttttggcattcgctggccaaattcttatcgctcttggtcaaaatcctgagatatcatctgaagctggactatatgccgtgtggttgattcctggtctttttgcatacggtttgcttcagtgccttaccaagtttctgcaaactcaaaacattgtccatccactggtagtttgttctggggccaccttggtaattcacattttgctgtgctgggttatggttcattgttttgaccttggcaacagaggtgcagctttgtcaatatcattatcttactggttcaatgtgatattgctagcaatatatgtaaaagtctccgaagttggcagaaggagttggcctggatggtcaagggaggcacttaagttaaaggatgttaatatgtatctaaggctagccattccatctacttttatgacttgcttggagtattgggcatttgagatggtggttctccttgcaggctttctacctaatccgaaactggaaacttcgattttgtcaataagcctgaatacaatgtggatggtttatacaattccaagtggcctcagcagtgcaataagtataagagtttccaacgaactaggtgctaggaatccgcaagcagcacgcctatcagtctttgtttcaggaatcatgtgcctaaccgaaggcatacttgtagctatcatcacagttttggtacgggatatctggggttacttgtacagcaatgaagaagaagttgtgaaatatgtcgcagcaatgatgccaattcttgctttatctgacttcatggatggaatacaatgcacactatcaggtgctgctagagggtgtggctggcaaaaagtctgttctgttatcaacctgtgcgcttactatacaattggtatcccttcagctgttacttttgcatttgttctgaagatcgatggtaagggactttggttgggaataatatgcgccatgacagtgcaaattttagcgctggttgtcatgctgcttcgtacaagctggaatgaagaggctgaaaaggcccgggctagagttcagggttcagatggaagaatcacattggcctga</cdnaseq>

Protein Sequence

<aaseq>MSGGGGEVEAAAEAAPLLVPHDPQPAVGAEVRRQVGLAAPLVAC SLLQYSLQVVSVMFAGHLGELSLSGASVASSFANVTGFSVLLGMGSALDTFCGQSYGA KQYDMLGTHAQRAIFVLMLMGVPLAFVLAFAGQILIALGQNPEISSEAGLYAVWLIPG LFAYGLLQCLTKFLQTQNIVHPLVVCSGATLVIHILLCWVMVHCFDLGNRGAALSISL SYWFNVILLAIYVKVSEVGRRSWPGWSREALKLKDVNMYLRLAIPSTFMTCLEYWAFE MVVLLAGFLPNPKLETSILSISLNTMWMVYTIPSGLSSAISIRVSNELGARNPQAARL SVFVSGIMCLTEGILVAIITVLVRDIWGYLYSNEEEVVKYVAAMMPILALSDFMDGIQ CTLSGAARGCGWQKVCSVINLCAYYTIGIPSAVTFAFVLKIDGKGLWLGIICAMTVQI LALVVMLLRTSWNEEAEKARARVQGSDGRITLA</aaseq>

Gene Sequence

<dnaseqindica>51..305#706..1256#1388..1474#1713..1769#1872..2110#2993..3111#3200..3286#4314..4370#gagtcaaacccagccaccatcggaattcgagggcgcggagcagcggcgaaatgagcggcggcggcggcgaggtcgaggcggcggcggaggcggcccctctcctcgtcccccacgaccctcagccggcggtgggggcggaggtgcggaggcaggtggggctcgcggcgccgctggtggcgtgtagccttctgcagtacagcttgcaggtggtctccgtcatgttcgccggacatctcggcgagctctccctctccggcgcctccgtcgcctcctccttcgccaacgtcaccggcttcagcgtcctggtaacacttaaaccataattacatatactttaacttcgggttggtaaattcttttagtatgaatagttactcctttgttcggcaaaaaaatttgggaagtgaaaatcagtacaaagtacggcgcgtttgctttatggtaggacatcatatccaaaaattagttcaagttctacaaaaatacaatccatccaatgatctaaagaggccttgtatatgcttgtagttgtattgtgcttatggaattatggtgactggcatttctttataaaatgtatggaatctcgtttgtttttcttaaagaatatgtatggattctcctttgttctactatatgatgcctgatcttttacttgcaagaaaatttcaatgaaaactgcatatctgtttattccatgacaagctgggaatgggaagcgcgctggatacattctgtggacaatcatatggagcaaaacaatatgatatgcttgggacacatgcgcaaagggctatctttgttcttatgcttatgggtgtcccgctggcttttgttttggcattcgctggccaaattcttatcgctcttggtcaaaatcctgagatatcatctgaagctggactatatgccgtgtggttgattcctggtctttttgcatacggtttgcttcagtgccttaccaagtttctgcaaactcaaaacattgtccatccactggtagtttgttctggggccaccttggtaattcacattttgctgtgctgggttatggttcattgttttgaccttggcaacagaggtgcagctttgtcaatatcattatcttactggttcaatgtgatattgctagcaatatatgtaaaagtctccgaagttggcagaaggagttggcctggatggtcaagggaggcacttaagttaaaggatgttaatatgtatctaaggctagccattccatctacttttatgacttggtaagcagcctgacatggagcaaccctgttcaacaatagatactctctttttatgatttaacagataagttacatgaaataccttgttctttctgcatggaaataattatttgacttgtgacataactcagcttggagtattgggcatttgagatggtggttctccttgcaggctttctacctaatccgaaactggaaacttcgattttgtcaataaggtgagcaaacagaatgtctgcattcctttcagtatagtttctagcaaatgagtttagttccaaagttgttccaaaacataaataataggctgtacatttcaaattcatggtattacatgcatttgctttttaaattttctgtgataaccatgaaatacacagctagcaacttagcatgttcaatggattatgctttcagacacttgataatgtgaagtaatgaatggtttgtttccagcctgaatacaatgtggatggtttatacaattccaagtggcctcagcagtgcaataaggtcagcagagcagaaatttgggatgacttttcctttcattttatgagatttgacacctcaaagcttatctaattttggcccatggctcatgtctctttgcagtataagagtttccaacgaactaggtgctaggaatccgcaagcagcacgcctatcagtctttgtttcaggaatcatgtgcctaaccgaaggcatacttgtagctatcatcacagttttggtacgggatatctggggttacttgtacagcaatgaagaagaagttgtgaaatatgtcgcagcaatgatgccaattcttgctttatctgacttcatggatggaatacaatgcacactatcaggtttgggataaaacacacatccaaatatgacaattctgcatttatcacgtagtgcctacactccctgtttttaatcatacatgtaaccagaataccagattgcatatctttttacattgttgccaatcttgcagttggccgttttgccccattacagtgccacttctaataataataaagcccttgaattgtttatatgttgcatgtcacggcctgtttaagagctttactgacgtgccttgtacaatccaattagactcagtaccactaccattccaacgcccaacgatttcactatgcaatctaccagcaacaccagcattaagagagatagtatagaagttttagtgtgtgattacgagaaattattctactgtagaaggatggtaatgtaagtattatgtaggagttttactatgcaagctaccagcaatgcttgtgttaaagaaggctgaccatataagtactgtgtagagaactgtgcctagctcggttggtatgggttgattgctttcacccagcagacccaggttcgaccccttgacctgctcatattccactggattaaatgaagggatggaaaaatatgtggcttctcctatcttaataccattggagtgctagtttttttttgttctgtttttttttttaaagaacaaagagtgctagttcatatgccattttctggggggtgatgtaatcttttgatattttagacttgttattgttcatgatatttctacataatttagttttttttaaccttggtcaaatattttatgttgcctttattatatcacatccatagtaaccatgatgccaacaaacctcaatattattgatcttagtcaccatttgtttattttttttatgactcttaaggtgctgctagagggtgtggctggcaaaaagtctgttctgttatcaacctgtgcgcttactatacaattggtatcccttcagctgttacttttgcatttgttctgaagatcgatggtaaggtaaattttattttttatatgcaattctggcatgacattgttgtgcaagttctgtcgtaatcccactctgagttggttttctgtgcagggactttggttgggaataatatgcgccatgacagtgcaaattttagcgctggttgtcatgctgcttcgtacaagctggaatgaagaggtacacccttaaacttataacctttacagtcaaagaattgatgcttattttttcccttttttaaaaaaaaaaatcgaaggcacaagatctccctctagcccagtaggaactaggaacagaaggacatgcactgttccagtagtatgaaaaattgagattgggcagtagctacgttcagtggcaaagccaggatttagagatggggggtgccatctacgagacatggtaattcacttaaggttcaatgaacagtgattttgtagtgttgatgcatgatcggtaactcgatatcatacatgttacagcgattagctacaagagagaacaagaacccatatatcatgattcgccaatttaaaattcagtaatatttttaatatatggatgattgaacagtttgttccattaattggagtcttgcaatcacttctaaaatgataaatcagttagctaagtcatttcataagtcagttgtcttatatcctatatagttagtctcatctgtaactaatgatataattaatagctagattataagtgctaatcatccttgggagaagagaggggaggggaggtcacataggggttaggggggtgttggccctccctggcccctacggtggcttcgccactggctacattgacctccacaaaattgctgaagcagcacaggactttacacctggtgaatgcttctcagtgcctcagtggggattggggaaggggatgcataactgatatctatgaattgctggttttctgctttgtcacaagaaactaacttgcaattattctttcctctgaaattaatttgcatggagaaatgcatatcaatcgtttccttctaactggtttggtatgacatggaagtctggtttgattgagtctgcgtggcatacctgttgagccttacctcaccagtccttcctgctgtgctgagatgacatgatatgctagcagtctttgtcttactatgttgtctataactaacttgtccttgatgcgtttacttttgttttctttataggctgaaaaggcccgggctagagttcagggttcagatggaagaatcacattggcctgaacatggatttcaccagttttgagtcatgattataccaccacaaaagcagttattgataccatagtactatatatagagtaattgatactgttgattatttgaaacttgtttgctgtacattcaataattgtaactgattgggcatgtgacttcttttcttttgtatagttgatatggtgtgctgtgaatgaaattctgcatagttcgccctgcaacacaggataaaggtaactcctaaccatcttttccaacacaattctatttccgtgtttgaaaagctttttcgaacatttttctacaattagtgcccaagtggaattattggagtagatgaaactaaaccatcagaaactgaaattgaagtcaccaaagcataactagggcagggtactgcaaatttatttttatttccccctccataccagatcagattgctattgttaatcttttgaagacaaagaggagtaatcattaaattactattatgagacactggcctacctaattcgatgttcttttcctgaggaaggtaccaagctagtctagcttcgatctgagagtcgacgagtaccatattacattcctacatgctttagttgttgctactcctctctcagttatagtagatgtataatgcgaaaaagaaacaaagttcaggaatttcctccttttaatgcaaagacatggaaagcttttgtgcattcctaaaaacaaggttcatgaagaaaatacagcataaaccacaccgttataatttgtcaacatccttgaaaattaaggcacgccctcttatgttaaaacaaacagttctggttttacaactcatggataataataacccacccgttcttccctatgtctcctggtagatggcacagcacaaaaaagtctgcagagattctggaacttcctctctggtcttcccattcaaaaattgttctttaaaacacatgcttttacgttagctggtgctgtagtggtgtttctataggcacaatggtacttagatcatcatcctgggtcttggtcttagtttatgatttatcactgttcttgcttattctctatcgcctctgtcttcatttttctttggagtactatatacatatatatatatatatatagctgctctaatatgatatttcgtggttaaaattcctggctccatcttgtttttcactcactttccgccactcagcatcctcagatgttatcatttatcatacatgtgtccctgtattgttggaccagaagtcttcggcacgtaaagctttagataaagcagcacctgacctgagtcagagcttctggacgcatatcataattgcttccctgcttggctagcttaatatacaaggccaattaagaatgcatttatcagaagaacgtgcacaaaccacccttattgatggcatccaaaagctacatttcctctgccaattaggtctgtgaggtcaaaggtctgatgaacctggcaaaagcagagacagatttctgaccacagaaccttcatctcagtgcagaattttcaaagactgcatttctattgtacagtaacatttccctggaaagactcctttacatatgatcagagacaaatgaggcttttgcaaatgtaaaacaatgaagttccacctttgaaagttgaaacccactagaaaggagacagataaagcattatctatgttgagcatatgtttggagtactaaggaggaacttagcatctgttgaggaatttagcatctgttgttgttagagaagaaaataatgagaaaacctgtgatcaaagggattcgaactcaggcaagcatgctgctccctgtcagccgagctctccctgccaaccaagctaggtgccgttctcttctacataagtagtagacgaaactcagctggttttaactgcatagacaagcattttgctgtccttctgtcagtaaccatgaaatgcaacacacggtcacccttgagctggtgagacacagctatcagccacaaagcagatagtactttgcttacaggagatgattctggagtgctttctttctggtttcggcagctcaatgatcccaccgtgaaaggcgaggaagcaacagaaatttggtagctcctccaaagtggagattatcgtggaagctgagctgtttccaaatcccaatactacacctactaatcgtctcttatctgaaagataccactgatcatttctgaataacgaaaaaaatgagaatgtgtaaataggcaaagttctatgattaaggccacgattgtcggttatttgggcgttttccacatatgattgatggcatctaatgatcacatttctactgattatatctctgggtcggttcagtaatgaggaaatgagagggaaacggctccttcaagttgttttactgtcttgtcgtgcagtctttttcttgtgggaaacagttcaacaaccactgcagcttgttgggtacctgggttcatggattcttttaagaccttttctgtggtggtcttgtttggcagtgcttaccttaaagctcttgcaaactggcttctcagatgaactctgaatatttcgttgtctgtacaggtagtgtttcagtttaccctatgagctacaactaacgacataatgtcagtgggtgcttaaagagactagtctctaggtacttttaaggtaatgtcagacttccgactgaatgcatatctgaaaactatgttcttgattgagaacaaggggggcatggttaaccatttcttttttgtttcagaaaggccagattggtatagctgaaatttgtttttttgctcattcttttctcgatataagttgaacattgccttgttttacaaaattgctcggactattcagatttacatactattgatcgtcatctcatattattgatcatcaccatttgcttggcaggttgtcagaattaaagactgccaagatcttggaagaacactattggtggtggcaaaagtgaattgttcatcactccccacaaacaaataattagcatttttcatgttgacattttatcgacaacaaccaatttacaaagtgtgcaagtgtaaattaacctttggacacttgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0707100, RefSeq:Os06g0707100