Os05g0110900

From RiceWiki
Revision as of 20:03, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0110900

Description

Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-)

Version

NM_001060979.1 GI:115461688 GeneID:4337593

Length

3215 bp

Definition

Oryza sativa Japonica Group Os05g0110900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:555224..558438

Sequence Coding Region

555521..555939,556142..556265,556347..556489,556579..556714,556791..557089
,557821..557887

Expression

GEO Profiles:Os05g0110900

Genome Context

<gbrowseImage1> name=NC_008398:555224..558438 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:555224..558438 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaattgctggggcgccaagatcagctcggagagcccttgccgcagcgcctcctccccttctggggggacatccaagtatgctagcaactccagtgtgtctgcagcctcggtgccgccaacaccacggagcgaggatgagatcctggaggcagcaaatgtcaaggcctttgccttcaatgagctgaggactgccaccagaaacttccggccagacagtgtgcttggtgagggaggctttggatcagtcttcaaagggtggatcgatgagaagacgctcgcaccaactaagccaggcacagggatggtcattgctgtaaagaagttgaatcaggaaggccaccagggtcacagggaatggctggctgaagtgaattatcttggacagttgtcacacccatatcttgtaaggctcgttgggtactgcgtcgaagatgagcagcgtcttcttgtttatgagttcatgccacgtggtagcttggaaaatcatcttttcaggaggagtacgcattttcagccgctctcctggaaccttcggatgaaaattgcccttggagcagcaaaagggctcgcatttctccacagtgacaaggttaaagtcatctaccgtgatttcaagacctctaatgtccttttggatgcgaactatgatgcaaagctctctgattttgggctggcaaaggatggaccgactggtgacaagagccatgtctccacaagggtgatggggacttatggatatgctgcaccagaataccttgcaacaggccatctgaccaccaagagcgacgtctatagctttggagttgtgctgctagagatgctatcaggacgacgagcactggacaagaaccgcccaaccggggagcacaatctggtggagtgggctaggccatacctgatgagcaagcggcgcatcttccgcatcctggacgcccggttgggcgggcagtactcccttgccaaggcccagaaggctgcaacactggcacttcaatgcatctctgtggaggccaagaacaggcctaacatggagcaggttgttgctgtattagaacagctccaggattccaaggagacaggggcaaatcctcagctgcagaagaagtccagcagcaagaacgcaggcagcaatggatcgaaaccgtcatcgaaggggaagcccgcaaatgcgaggctggtttaa</cdnaseq>

Protein Sequence

<aaseq>MGNCWGAKISSESPCRSASSPSGGTSKYASNSSVSAASVPPTPR SEDEILEAANVKAFAFNELRTATRNFRPDSVLGEGGFGSVFKGWIDEKTLAPTKPGTG MVIAVKKLNQEGHQGHREWLAEVNYLGQLSHPYLVRLVGYCVEDEQRLLVYEFMPRGS LENHLFRRSTHFQPLSWNLRMKIALGAAKGLAFLHSDKVKVIYRDFKTSNVLLDANYD AKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEML SGRRALDKNRPTGEHNLVEWARPYLMSKRRIFRILDARLGGQYSLAKAQKAATLALQC ISVEAKNRPNMEQVVAVLEQLQDSKETGANPQLQKKSSSKNAGSNGSKPSSKGKPANA RLV</aaseq>

Gene Sequence

<dnaseqindica>2500..2918#2174..2297#1950..2092#1725..1860#1350..1648#552..618#gagtagaattctagaagaaggagaaagaaatcgaaaggcagcagctgatggttgcatgctgtgcgtcgctctcatgctcaaaaggtcaacagagttgagtccctcagctaaggcaggcaagcacgagagtcacagatacatatcccctttaatctcctctcccaccaatcctttgatccattcatcccaacttcttccatagtacaaatctcttgctcccctccctctcatctcctatctgtatctatttctatctctctatctcgtatctccttgaagaagaacagagagaggattgggaggagtagtaggtagttgatttagttttgaggagccggagaggagagcaggtgtcctggttcgtgattcgatttcagctgttctgatcgcttcttgtggcttctgtgccgtgctggcctctcgttcttgagcctttgtcgattcgattcccgcgaaaaggaggcgtctttttgtgagttaggtgtggtgcttcttgggctctactacctccgaggtgaaggtgttgttgttggtggtggtggattttcgccatggggaattgctggggcgccaagatcagctcggagagcccttgccgcagcgcctcctccccttctggtgcgtctcacctttctcctctcttcttccttcctccatatagcatttcttactatggtgattagaatctagacatgtatgctatgtttattcctttttttttcctttagttttttttttaaaaaaaatttctgaagtatccaatcaatcagtcatatctctgtgttgggaattttgtgatttgtgtaattgtgtctgacttgtgtgttactagtataggactataggttatgttaatttaatcccctttttaatggcttcctacaggctgtttagggtcaccaatcacatgccttgtctcctagcactggtagtgcgtgcgtataagttctagtttgagctcttcttggatttgtttcatgcgtaaagctcaattcttctccttctccagactaggagtaggaaaggaagcttccaatggaaacgcacatataactttatctgacttttcctttgttgctagtatttgttcgttccaagtgcagaagctcaaatcaggctaagtggaaaattctaattttggtgctactttctaccaaaatctgcgtgcttttttttcaatgttattgactgtattatgcagaaagttcaatacttttggtgcaacctcttaacttatctgtgaagtttttgccttttaatacccaaaccaagcaaagaaacaacaacttgatcaggctaaaatctaatggaccacggcctgaaaatttgtactgtcttctgttgtttaggggggacatccaagtatgctagcaactccagtgtgtctgcagcctcggtgccgccaacaccacggagcgaggatgagatcctggaggcagcaaatgtcaaggcctttgccttcaatgagctgaggactgccaccagaaacttccggccagacagtgtgcttggtgagggaggctttggatcagtcttcaaagggtggatcgatgagaagacgctcgcaccaactaagccaggcacagggatggtcattgctgtaaagaagttgaatcaggaaggccaccagggtcacagggaatggctggttagtacccactggctgattctttcctgtcaagtttgcactgtgtatgacattatcttcctttcaatttgtgcaggctgaagtgaattatcttggacagttgtcacacccatatcttgtaaggctcgttgggtactgcgtcgaagatgagcagcgtcttcttgtttatgagttcatgccacgtggtagcttggaaaatcatcttttcaggagtaagtagtttttttttgtactttcctagttgctagcttctgatttacaatttggaatacaacatgctaaaatgtgttgtaaaatgcagggagtacgcattttcagccgctctcctggaaccttcggatgaaaattgcccttggagcagcaaaagggctcgcatttctccacagtgacaaggttaaagtcatctaccgtgatttcaagacctctaatgtccttttggatgcggtacggagtcctcagaactattatcctttgtgttcacaagatagcttaactggtgatctgatagacagactgtattttcagaactatgatgcaaagctctctgattttgggctggcaaaggatggaccgactggtgacaagagccatgtctccacaagggtgatggggacttatggatatgctgcaccagaataccttgcaacaggtagcatattacttccatgttctgaatcctagaatgtaatcatttcatcacaatgaatgaacatgcacgacaaagatttgagcttcattacacatcgtgtttactgtcaatctatggttcccttgctggcatctgggtgccaaacatagagtgatttggctattattgaattaactgacacatttctctgtatgttgtgaaggccatctgaccaccaagagcgacgtctatagctttggagttgtgctgctagagatgctatcaggacgacgagcactggacaagaaccgcccaaccggggagcacaatctggtggagtgggctaggccatacctgatgagcaagcggcgcatcttccgcatcctggacgcccggttgggcgggcagtactcccttgccaaggcccagaaggctgcaacactggcacttcaatgcatctctgtggaggccaagaacaggcctaacatggagcaggttgttgctgtattagaacagctccaggattccaaggagacaggggcaaatcctcagctgcagaagaagtccagcagcaagaacgcaggcagcaatggatcgaaaccgtcatcgaaggggaagcccgcaaatgcgaggctggtttaagtgaacaatcatatatcatatgatcagatatagatctgttgagatgagtagtgtaggctcttagagggacctgtaaagaagaggagagttgtgaatccttggtgcttgcctgttttagttgtttttgcagcttctagtcagagtcttgtctgaagtaaaaagtatgtggtcgcctatatctgcatgcattcagttcagtgcattgtggattgtacagtttatatctagttctaatgctgcgaaatttttgttcgaggcaacagatgtgcccagatccagtttttcctgatttttaaa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0110900, RefSeq:Os05g0110900