Os05g0127500

From RiceWiki
Revision as of 20:03, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0127500

Description

Similar to Leucoanthocyanidin dioxygenase-like protein

Version

NM_001061069.1 GI:115461868 GeneID:4337689

Length

6178 bp

Definition

Oryza sativa Japonica Group Os05g0127500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:1540028..1546205

Sequence Coding Region

1540262..1540543,1544491..1544824,1545495..1545985

Expression

GEO Profiles:Os05g0127500

Genome Context

<gbrowseImage1> name=NC_008398:1540028..1546205 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:1540028..1546205 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaggcggcgggtgatgggggttggccggagccggtggtgagggtgcaggcgctgtcggagagcggggcggcgacgatccccgaccggtacgtgaggccggagacggagcggccgtcgtcgtcgtcggaggcgaacgccgtcgccaacatcaacatcccggtggtggacatgtcgtcgtctccggggacggcggcggcggcggtggcggaggcgtgcagggagtgggggttcttccaggcggtgaaccacggggtgccggcggcgctgctccggcgtgcccgcggcgtgtggcgcgggttcttccagcagccgatggaggtgaagcagcggtacggcaactcgccggcgacgtacgaagggtacggcagccggctcggcgtcgacaagggcgccatcctcgactggggtgactactacttcctccacgtcagaccaccccacctcctctcccctcacaagtggccccacctcccccctgacctcagggagacgacgacagagtacagcgaggaggtgaggaggttatgcgagaggttgatggcggtgatggcggtggggctaggggtagaagaagggaggctacaggaggcgtttggtggtagagagggtgctggagtgtgcgtgcgggtgaactactacccgcggtgcccacagccggatctaacactagggttgtcctcgcactccgaccccggcgggatgacggtcctccttgtcgacgaccgtgtcaagggactccaggttcgccacgccggtgcatgggtcaccgttgaccccgtgcctgacgccttcatcatcaacgtcggcgaccaaattcaggtggtgacgaacgcattgtaccggagcgtggagcaccgggtggtggtgaacgcggcggaggagcggctgtcgatcgcgaccttctacaaccctcggagcgacctgccggtggcgccgctgccggagctcgtgtcgccggagcggccgccgctgtacagccccatgaccttcgacgactaccgcctctacatccgccgcaacggcccccgcggcaagtcccaggtcgatcgcctcgccgccgccgccgccacaatacctaattctactaccaccactcaataa</cdnaseq>

Protein Sequence

<aaseq>MAEAAGDGGWPEPVVRVQALSESGAATIPDRYVRPETERPSSSS EANAVANINIPVVDMSSSPGTAAAAVAEACREWGFFQAVNHGVPAALLRRARGVWRGF FQQPMEVKQRYGNSPATYEGYGSRLGVDKGAILDWGDYYFLHVRPPHLLSPHKWPHLP PDLRETTTEYSEEVRRLCERLMAVMAVGLGVEEGRLQEAFGGREGAGVCVRVNYYPRC PQPDLTLGLSSHSDPGGMTVLLVDDRVKGLQVRHAGAWVTVDPVPDAFIINVGDQIQV VTNALYRSVEHRVVVNAAEERLSIATFYNPRSDLPVAPLPELVSPERPPLYSPMTFDD YRLYIRRNGPRGKSQVDRLAAAAATIPNSTTTTQ</aaseq>

Gene Sequence

<dnaseqindica>5663..5944#1382..1715#221..711#agtgagtcgtacaagtgtagaacaacacttgtgctacctagcttagttatctcgttgccagctgcacagttccagcttcagtttcagctagcgctagctgatccactaatcacatcactgcgtgcttaattagctaggattaatcgattcatagatatctcctacaaattccaagtgaaacagcagcatcagcagtggctagctgagtgatcgatcgatcatggcggaggcggcgggtgatgggggttggccggagccggtggtgagggtgcaggcgctgtcggagagcggggcggcgacgatccccgaccggtacgtgaggccggagacggagcggccgtcgtcgtcgtcggaggcgaacgccgtcgccaacatcaacatcccggtggtggacatgtcgtcgtctccggggacggcggcggcggcggtggcggaggcgtgcagggagtgggggttcttccaggcggtgaaccacggggtgccggcggcgctgctccggcgtgcccgcggcgtgtggcgcgggttcttccagcagccgatggaggtgaagcagcggtacggcaactcgccggcgacgtacgaagggtacggcagccggctcggcgtcgacaagggcgccatcctcgactggggtgactactacttcctccacgtcagaccaccccacctcctctcccctcacaagtggccccacctcccccctgacctcaggtacacatcactcatccactaatttccacctataattattactattcaacacaaaattcctccttactccctctgtcccataatataatgaatttcggatgaatatgacacatcctacaccgtgtttagttccaaagtttttcttcaaacttccaacttttccattacatcaaaactttcctacacacaaacttccaacttttccatcacatcgttccaatttcaaccaaacttccaatttttgtgtgaactaaacacagtcctagtataataaatctggacatacggtatgttcaaatttgttgttctaggatgtgtcacatccatccaaaatcccttatattatgggacggaggaagtagttgttttagcatttttcttaaatgttagtataaggccgtgctcttttgaggagttcagaacatttccctctcaacatgcaaaacagaataatagactagcgcgtgattaattaagttttagcttacaagaacttaagaaacatatcgatatgactatttaaagaaactcaagtatagaactttttttcttccaaaaacacaacctttagcaattcgaaaagcacgagcgagggaatacaagtttaaaagggagaaaaggatatgtcctaattacatgtgcaaaaatactaactaatatatatgtatagggagacgacgacagagtacagcgaggaggtgaggaggttatgcgagaggttgatggcggtgatggcggtggggctaggggtagaagaagggaggctacaggaggcgtttggtggtagagagggtgctggagtgtgcgtgcgggtgaactactacccgcggtgcccacagccggatctaacactagggttgtcctcgcactccgaccccggcgggatgacggtcctccttgtcgacgaccgtgtcaagggactccaggttcgccacgccggtgcatgggtcaccgttgaccccgtgcctgacgccttcatcatcaacgtcggcgaccaaattcaggtatttgcattacatacatttcaacaagtaactattacacgtgtgttatctaccactccaaaaatgcactggatttctttttctacctccatatatatagttttattttaattttcacctgcattttcctcctttttttcttataaatatacacaatttctccggtttaaaatggtcgtcttcacggcctcacgggtgcaccgtgttctagctagttttttttcccctttctagtagttaattttctcgatttttttactcctcttccaaaagtatgtaaagatggtgatgcatgtgtgtgttagttttgtcaaacacacatatctatcgatcacatccatcaatataacctagttattatctcatcgatcgatccacataacgatattaataattagtgggctatattaggacaacaagaagggattaacacaatccataaactagtaaagtacagccaacctactactgttacctgacgtggatcgaagagggtaaaataaaacaattagaaaggtaggatgtttacgtggccggtatatatccaaccttagcttctacttgcaagatagttatagcaaagctccagatttttttacatgattagtagaagaggtggacataaaaaatgtttttgtcccagcatatttttggttgtttttcacgtggcgacacacgtaattcggcagttttgacggtcacatgcttcagtttgatttgatcgctactagtatctaatatataaatagtttgattgtgatgaaagggatttatatgttcagtaattagtgttcttttgatacttgtaattaagtttatctataaaatatgagtggtcaaactaatgaaacaaactatgtataaagtcaaaattgtcatgtattacgagacaaagggatcgagtactatatatataataggctagctagtgcatatgcatgttggtaaaaataataggcacgtgggaaaaaataatgaaccgtcttcatggtaaaatatatggaataatttgtaagggcagccatagtggcggaaacagcttctggtatgtcaggtgatcgtctggactccgccactaccgttattattaccgaatgcaatcaatatatatataattgatcggtcgtcgtgaaacgctattaatcgtccgggcttgacgacgatgctaactccgccactgaacaaccacataaacataaaagaaaaaagaaatatacataatcttagagttcatcagtccaaaatataaacatttctatactaaatatggccttaggtgcacgcattcgagtagagctatgtggctgcgcgagattcacgtagagatgctattgttttatggttataagaaatgagttcatatgaaataaatatcttcgacgcatgtttttttcctttttatggatgcacgcatgacatactaccagttttttttttgttgaaatttgatattatggctagtcgatcattggctgagtcgtttagtcctctgtatatatatgcattttctgtggtcctagctatgacgactattctaaattaactagaggacaaatttaggagttatcacatagtactggactaaatgaaataacatgactaatttatgtttcttactccttctgttttttttaaattataagttgttttaactttgaccaaagtcagagacttataatgcatttaatttatgcaagtcgatagataaaaaataaaactgattatctcgtgcgtttgtattgtatgcgtccgtcaccaggcgagaagaatcggagccgtttgctagcagctatctgtgtgtgaatgcatgcctactaatcaaccaattaatcaattaggctagctagttgctgacgtggtggtatttatacgtactccgtatgtacagtatgcgtacgtgtacacacaagtttgacctttcttccaacgtcatcagctagcttgaatgtttgtgcaaacactatataaataaatatgtactgcacctatcaactaaaccaagcaatgatcatgtgcttaatttgtgtttgtttagtatgagaaggttaattttctcatcttaaaaaatataattaaacataacatgatgatgattaacactaccgtaaaccattgatcatcttttctgtggctgtattccggattgggcatacaacaatgtgcaatcatgaatgcatgtctgtcacttgttagcccaaccacacgaatcagaggtaggaaaatcactccccaacaaactccctgatctctagacatgtgttgcaatttttttccatcttgtttcattctgcaaaaaaataaaaagaaaaaagtatgctggcagggttttcagtggccacatcatctgaatatgtctgcaaaataggaacagtatgctacaatgcccttttctgctactatatatacccttttgttgatgctaacctattgctaccaaattttagagagaagaatatattgctgataatcttagttgcctagctagctagctaccaaaaccttgtagtagttggacagatttgtatatgggggcgattatgttcttatccctgtttttcaactctaactatcgctgtgtttagttctgaaatatttcttcaaactttcaacttttccatcacatcaaaactttcctacacatataaatttctaacttttccatcacatcgttccaatttcaaccaaacttttaattttgacgtgaactagcctataatttaatcgtaccttctttaaaaaactttgtgattttgtcttgtttttcttaactgaagcatgtgtaatatttgcatggtcgaataaagttcagggtaaattaaataggtagagcagtagtagcagttgcagacataaggctgttggtagtgtagtgcatttgtgctgctagctcctgtgagcacgttttccacagggccatgcaaatgcaaatgcaattcagagcaaaggaatgcctttatttcacatcccaaccttgcaaggtcccctacacatctctctgattgctgctcttccttcatggagtagtatataggaccagtactgcactgctcctttgaagtagtaggatgctttctttgcacaccagacatatcactatctacttgcatcacactcacacacccgtgagtatgcctcgatcggtttaatgcgtcctcaagagatgaggagttttttttttttttttttttggccgggaagaccgaatgaggccatctgaatgtagagatgcagagttgggggaacaagcaattagtcttatactacctccgttttttaatagatgtcgccgttgactttttctcacatgtttgaccatttgtcttattcaaaaattttatgcaaatgtataagatataaatcacacttaaagtactatgagtgataaaacaagtcataacaaaataaattataattacgtaaattttttgaataagacgaatggtcaaacatgtaaaaaaagtcaacggcgtcatctattaaaaaacggaggtaatagttatttgtttttcaaaatcctattaaaaatatacttgtgtgtgtaattttcgttgccaccttatcacaccaaagatgcttaatttatgacggcaagatagtgcaaaaattctaaataagtaactctatttcggtaactcggaaaaataattaaggtttcgatttggctatttatcgtgcatatgagttttatctagcctagagttgcacccgttcttgaaaaatactaagaactcatttttggaatagaggaattttatgaaaatttaaaggaaattaataaactgtccttttaaacatcttgtaaaatttatgcgttccaaagtaattaaagaggtctagtactctagtgtgtggtggtcatataaattttactatacctttagctagttggtgcattattatctaataaagaagaaatttgtgaattaattaattaaatttaaacacaggtggtgacgaacgcattgtaccggagcgtggagcaccgggtggtggtgaacgcggcggaggagcggctgtcgatcgcgaccttctacaaccctcggagcgacctgccggtggcgccgctgccggagctcgtgtcgccggagcggccgccgctgtacagccccatgaccttcgacgactaccgcctctacatccgccgcaacggcccccgcggcaagtcccaggtcgatcgcctcgccgccgccgccgccacaatacctaattctactaccaccactcaataatatcatcatcatcatcatctccggccatcgccgccgtcgccggccgtcgccgtgtatgattcataattagttagctgattagtaataaattaattaatatggacatgctagctagctactagctatatgtgcaggcatgtgatgaaatggaattgatttaagtttgttgcgatctgcaattgattgtcttgtcatcgtcggttctcgatcaaattaatgatcagtttatatact</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0127500, RefSeq:Os05g0127500