Os05g0187600

From RiceWiki
Revision as of 20:05, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0187600

Description

Peptidase A1, pepsin family protein

Version

NM_001187323.1 GI:297723776 GeneID:9268060

Length

4631 bp

Definition

Oryza sativa Japonica Group Os05g0187600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:5368794..5373424

Sequence Coding Region

5368794..5369058,5370498..5370675,5370768..5370906,5371014..5371084,5372141..5372355
,5373270..5373424

Expression

GEO Profiles:Os05g0187600

Genome Context

<gbrowseImage1> name=NC_008398:5368794..5373424 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:5368794..5373424 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgtggagcttcgcggctcgccgtggtggtggggagagaggagggggcgtcttccccggttgacggagtcgcgtccgacgaggcgggattccgggagggaggagagcgcagcacggcgcggcggcggagcgagagattcccgcgcgtgagaggagcgcggaggagggagcttcttcggttcttccccgtggagcgcgcgcggctggagcgagcgagcgaggcggcgtcggatcctctcgcgcacgcggtttcgctggggattgttgatggtgtgatgggcttggggccatccaatacttctctggtgtaccagctggcaaagtcccaaaaatggaagaaaatgtttgctcactgccttgatggcaaaaggagtgggggcatatttgtgttaggccatattgtgggtccaaaagttagaaaaactcctctggatcaaacaagttctaggtaccgaactactttgctggaaataactgtaggagaaacttctctaagcctttcagctggaaatgttgagataaaaagtcaaaacatgacaatattggaaactggttctctgatttcttacctgccagagaaaatattttctgatcttgaggatatcagtgtcataaacattggaggctattcatgtttccactatgaacgaaggatgaactccgatgtgaagtgggatgatgaagacgtgtggagccatgatagagtgaagttggaaactgaacatacaactccagctgataacacgtctgagaaaacagaagttcacagtggactgctttcacgttcaagaaccaggttgcttgcgatgattggtgctctggtgtgttacgcgagacggtcaataaccaagctgtttgcgatgattgatgagaggatgaatgtaacaggactgcaaagaggacggaggaagcgggcgagttcatcaatggtgaatccgaatccgaatgcatcgtccgcgagcagcagcgttcccacgctatggaagagccaggcggcggaggcggcgccgagcgtcaagtag</cdnaseq>

Protein Sequence

<aaseq>MRGASRLAVVVGREEGASSPVDGVASDEAGFREGGERSTARRRS ERFPRVRGARRRELLRFFPVERARLERASEAASDPLAHAVSLGIVDGVMGLGPSNTSL VYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTSSRYRTTLLEITV GETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDLEDISVINIGGYSCFHYERR MNSDVKWDDEDVWSHDRVKLETEHTTPADNTSEKTEVHSGLLSRSRTRLLAMIGALVC YARRSITKLFAMIDERMNVTGLQRGRRKRASSSMVNPNPNASSASSSVPTLWKSQAAE AAPSVK</aaseq>

Gene Sequence

<dnaseqindica>1..265#1705..1882#1975..2113#2221..2291#3348..3562#4477..4631#atgcgtggagcttcgcggctcgccgtggtggtggggagagaggagggggcgtcttccccggttgacggagtcgcgtccgacgaggcgggattccgggagggaggagagcgcagcacggcgcggcggcggagcgagagattcccgcgcgtgagaggagcgcggaggagggagcttcttcggttcttccccgtggagcgcgcgcggctggagcgagcgagcgaggcggcgtcggatcctctcgcgcacgcggtttcgctggggattggtaagttcgtgctcatcacaacgtttctgatgccattctgcacgcagatgtgctggattggggattcttatggcggcttgattgtgtgcgcgcgcgtgggttggggattctacacgcagatgctggattggggattcttatggcggcttgattgtgtgcatgtggggggtacattgcatattgattatgtgtgtcatcttctcgcggctaatggatttgcattctgcattctacacgcactagattgcgggtggtagactctgttcttatcgtgccttccgcggctaatcgatttggtgggagacaccactgtggcacgattgatgcaaacgaatgctaaatatttggattagttcatcctttatcaatcagctctgctcaattgattgttcaatatgtcttaaatgcttattgggtacttcgtaactccaatgaagttataactatgaaatgtttactgtaaatatcttgtattctgttattatggagtatttatcaaagtacattcaattatcccttctatttttttgcttctaacttatgcatgtgtcctctggagataatattatgtgtcctctatcaagttctaatgactttccttttgatattgtttgatgcagctttattgtgatcctatataagtggtcataaaaatggttgttccacattgctacatttaccttatattgcctcttctatggataacaaatgcatccgccgttaccatcttcaatgtgaattatatgcccatggaagacaaggtcaaaggccgcaaattatcagtagctgatatccacctaggtggaaatgtacttcaatctgggtgaggaactttacatgatctatgttctctctttctctctctctctatatatatatagatcaaccgtttgtgcacttactgaattctaactttggttgcaacaattcatttcaggaactattatgctgaactgatacttggtgagccaccaaaaaagttcattgtgttgattgacaccacatctaatcttctgtgggttaattctatatcttgtaaagattgccctacaaaaagtgcatccagagtaattatctactgctttatttttcttaacctaacaggtatttggaggtgactaaatattctgaaccaattacacttgtgtaggtcctgagtttctatgatctggagaattcacagactggacaacttttaccatgtagtgatgttttctgcaaacacctatccagctccacatctattccatgccaaaaagaccatccatgcattcactttgaaaagtatggcactgaaaatttgctccacggaaaaattgtccaagattttcttgtacttgaaattgtcatcaaccattacaaaacaagcaaagtcagaactaaagttcaatttggaagcatttctcaacacttgaaatccttatcctcaagctttacagttgatggtgtgatgggcttggggccatccaatacttctctggtgtaccagctggcaaagtcccaaaaatggaagaaaatgtttgctcactgccttgatggcaaaaggagtgggggcatatttgtgttaggccatattgtgggtccaaaagttagaaaaactcctctggatcaaacaaggtacttgacattgttgtttaatatgactgtggtgtagatgtattcttaattgcgaggtgatattgactatggagtatttgccaacgctgtagttctaggtaccgaactactttgctggaaataactgtaggagaaacttctctaagcctttcagctggaaatgttgagataaaaagtcaaaacatgacaatattggaaactggttctctgatttcttacctgccagagaaagtataccagtcgtttctagattctgtaagaaaattcactttcctctttcagcaccctttgctacattcattttacttgtcaatatttattgtcatttttctgtacagatattttctgatcttgaggatatcagtgtcataaacattggaggctattcatgtttccactatgaacgaaggtaaatatgtttatgattttagagattattttttcttcttcggaaaaaatggcatgtgctttctaagttcttaggaaacattaatggtctatccttttttttgccctacattaacatcatgttccatgagataagaatgtagtttgttctataggtaatctgttcaagtaattagatatattaaattttcttgctgatagtgatagattaactttttagcaatatatgaacatctttttgatacattttggtgttgattgcacaatcttcaccaataaattgttcaaagtcacagaataacctcctctctctcactggtctggggagtggcgacatgttttgacttaatggggctactagtcctctcagtttttcatcttgggaacaagcgtaccagtttagctagatccatcaaacaaccagataactaatcaacatgttgtttttgttagtattgatgctaggtttccagaggttgtatttcacttcaaggaactgcttactttgcgagtctaccctcatgaatatatgtttcacaatatggaggtatttcgtaaagaaactatgctgttgctcaaatatgcactgagaaaatattgtgatgtatattgtgttataaactgtttctctttaggagcactattactgtcttgggtttttgagttcagaacaaaggaatcatcgagagaaggacttgttcattctgggcggcaagttactaagcctgtactagaattgtactatttgatggtttgcatatttgacttggtggtaggtggtaactgcttcttgcgattataaacctgtggtgcaggaaatttgttcactgataaagttgttgtatatgacttggataatatgatggttggatggaccgaatttgattgtaagtcctgtcaacgttttagcttcattgactttcaaactgcaaccagtaaaatgttgttttataccaggttctttcgaatattgtgtgcactgtatctgttcaggtaaatccagtgtgcatgtgagagacgaaccgacaggaaaaatatatgaagttggatcgcacaggatgaactccgatgtgaagtgggatgatgaagacgtgtggagccatgatagagtgaagttggaaactgaacatacaactccagctgataacacgtctgagaaaacagaagttcacagtggactgctttcacgttcaagaaccaggttgcttgcgatgattggtgctctggtgtgttacgcgagacggtcaataaccaagctgtttgcgatgattggtgcgaccatttgttacgggattctcttggccacgttgttcctctgcaccaccttccgtcgatctaccagctggagaaatatgagtatgctgaaatggttgttggctctagttgtgggggagattttggttatcattgtagggttcatagttttgtagacaaagcacatagacattgtttcccacagatatacagttttgaagaaaaagttttacacgtagtggatgacacatacaactgcaaacagccagtttgtatagtaccgcacaaaacactgaaacagggggtagagaaagttaactgtacatatttccttcctgttaaaatttgaatgttccattgattgtaaaactgaaacgaggtttgaataatggttggattgagcctgctgcctgcagtgcaaaatcgtgttcagttttggttgtgaaattggtatctgtaacttgcaatgtttgccgtattcgagaagcttttgtttgtgtaagatcatctgatgctgttcgtcttgtgaataacaataaaatctttgatgatatcattgatatgtatatatacttagaaaaaatgccaaagcattacaacgggtaaatgatattttaattttattatcgttatatggtttagctagggtaaaattcactgtgtgaatttgcatgaatattttttaaagaaaatcatagactgtaattaggagtttgtatttcatctcaagttagcatgcgggtttttttaaaagagatttcttatatgactctttttgtattttcaaaaacaaacaagcttaaaattcaactcaaatagggatatgcatttccaaaagccgcagagaaattaaaaaccgactcaaacgaggtaccataatagtaatagagattactttacattacatcgttatgatctcttgttggctagagatgagaggatgaatgtaacaggactgcaaagaggacggaggaagcgggcgagttcatcaatggtgaatccgaatccgaatgcatcgtccgcgagcagcagcgttcccacgctatggaagagccaggcggcggaggcggcgccgagcgtcaagtag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0187600, RefSeq:Os05g0187600