Os08g0162100
The rice Os08g0162100 was reported as Lissencephalytype-1-like 1(OsLIS-L1)[1], ABERRANT SPIKELET AND PANICLE1(ASP1)[2] and Oryza RAMOSA1 ENHANCER LOCUS2(OsREL2)[3] respectively in 2012 by scientsits from China, Japan and Korea(in chronological order).
Contents
Annotated Information
Function
This gene plays an important role in male gametophyte formation and the first internode elongation in rice[1]. As a transcriptional co-repressor it repress a number of genes to regulates various aspects of developmental processes and physiological responses[2]. Its function in branch formation regulation is likely by suppressing primary branch formation and promoting secondary branch formation[3].
Mutation
- At the harvest stage, the height of the Oslis-l1-1 mutant plants was only 48.9 cm, whereas WT plants had a height of 87.3 cm. (Fig. 1a).
- The semi-dwarf phenotype of Oslis-l1-1 was partially due to its panicle length being shortened to 12.1 cm from 20.5 cm in WT.(Fig. 1b).
- The retarded vegetative growth also accompanied by smaller florets (Fig. 1c, d) and very low fertility. In contrast to the WT seed-setting rate (81.4%), the seedsetting rate of Oslis-l1-1 mutant was only 11.3% in the same normal field conditions.
- The 10-seed length and width of oslis-l1-1 was only 84.9 and 70.4% of the WT, respectively (Fig. 1e, f)[1].
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os08g0162100 |
|---|---|
| Description |
Similar to CTV.2 |
| Version |
NM_001067590.1 GI:115474916 GeneID:4344728 |
| Length |
8681 bp |
| Definition |
Oryza sativa Japonica Group Os08g0162100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:3666095..3674775 |
| Sequence Coding Region |
3666651..3666730,3666841..3667020,3667104..3667217,3667322..3667480,3668185..3668365 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:3666095..3674775 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:3666095..3674775 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgtcgcttagcagggagctggttttcctcatcctgcagttcctcgatgaggagaagttcaaggagacggtgcacaagttggagcaggagtcggccttctacttcaacatgaagcactttgaagacctggtgcagggaggggagtgggacgaggtggagaagtacctcagcgggttcaccaaggtggaggacaaccgctactccatgaaaatattcttcgagatccggaagcagaagtacctcgaagcccttgacaggcatgatcgagccaaggcggtggagatactcgtgaaggatctcaaggtgtttgcctcattcaatgaggagctgttcaaggagataacacagctgctgacgttggagaattttaggcaaaatgagcagctgtccaagtatggggacacaaagtcagctcggaatatcatgctcatggagctcaagaagcttattgaggcaaacccactgtttcgggacaagctgaatttcccaccatttaaagtttcaagactccgcacattaatcaatcaaagtcttaactggcaacatcagctatgcaagaatcccagaccaaaccctgacatcaagacactgtttaccgatcattcttgtgccgctcctaccaatggagcaagagctcctccccctgctaatgggcctcttgttggaccaatccctaagtcagctgcatttcctccaatgggtgctcatgcgccatttcaacctgtggtgtcaccatctccaaatgcaattgcgggttggatgacaaatgcgaacccctctttgccacatgctgcagtcgcacaaggaccacctggtcttgttcaacctccaaacacagcggcatttctaaaacatccaaggactccaacaagtgctcctgccattgattatcaatctgcggattctgaacatctgatgaaaagaatgcgtgtaggccaaccagatgaggtgtccttctctggtgcaagccaccctgccaacatttatactcaagatgaccttccaaaacaagttgttcgcaaccttaaccagggttcaaatgttatgagcctggatttccatcctgttcaacaaaccatccttctagttggaacaaatgttggtgacattgggatatgggaagttggctcacgagaaaggatagctcacaagacattcaaagtttgggatattagttcttgcaccttgcctttgcaggctgcactgatgaaagatgctgcaatatctgtcaatagatgcctgtggagtcctgatggaagtattttaggtgttgctttttcaaagcatattgttcagacgtatgcattcgtgctcaatggagaattgcggcagcaagcagagattgatgcccacattggtggggttaatgatattgccttctctcaccccaacaagaccctctcaattattacttgtggtgatgataaactaattaaggtatgggatgctcagacaggacaaaagcagtacacatttgaaggtcacgaagctccagtatattctgtttgccctcactacaaggagtcaattcagtttatattctctactgccatcgatgggaaaattaaggcatggttatatgactgtttgggctcaagggttgactatgatgctcctggacattggtgtactaccatggcttacagtgctgatggaacaaggctcttctcatgtggtactagcaaagatggtgattcacacttggttgagtggaatgagactgagggagctattaagaggacatacaatggtttcaggaagcgctcactgggtgttgtccagtttgatacaacaagaaaccgcttcttggctgctggagatgaattcgttgttaaattctgggatatggataacaccaacatacttacaacaacagattgtgacggtggactgcctgcgagcccacgcttgagattcaacagagaaggttcattgcttgctgttacagcaaatgaaaatggaataaaaatattagccaacactgatggacagcgtttgctaaggatgctagagagcagagcatatgagggctctcgagggccacctcaacaaattaataccaagcccccaattgtcaacacccttggttctgtttccaatgtgtctagtcctatggcagtgaattcggagagacctgatcgggcattgcccacagtgtcaatgagtggcctggcgcccatggatgttagcagaaccccagatgttaagccaagaattacagatgaatctgaaaaggttaaaacctggaagttggcagacattggtgactcaggacatctccgagcactgcgtatgccggatacatcagcaacttcaagcaaagttgtgcgtctgctgtatacaaataatggggttgcgcttttggctcttggctctaatgctgttcataagctgtggaaatggcaacgcactgataggaatcctaatggcaagtccactgcatctttcactcctcaaatgtggcaaccagcaaatgggattcttatggcaaatgacactagtgatggcaaccccgaagaagcaactgcctgcattgctctgtccaaaaatgattcctatgtgatgtctgcatccggtggcaaagtctcattgttcaacatgatgacattcaaggtcatgactactttcatggcacctccacctgctgcaactttccttgcattccaccctcaagacaataatatcattgctattggaatggaggactctaccattcaaatttataatgtccgtgttgacgaggttaaaagcaagcttaagggacattcaaaaaagatcactgggctggcattttcgcagtcaatgaatatgcttgtatcttcaggtgctgatgctcagctatgtgcttggagcattgatggttgggaaaagaagaaatcaagatatatccaatctccagcaaatcgttctggtgctttagttggtgatacaagggtgcagtttcacaatgaccaaacacatattttggtggttcatgagagccagttggcgatctatgatgcaaagctagagtgcttgcgctcgtggtccccaagagaagcactccctgctccaatttcaagtgcaatatactcatgtgatggtctcctcatctacgccggattttgtgatggtgcaattggagtcttcgaagcagagtctcttaggctgcgatgcaggatagcaccttctgcatacataccaccttccatgtctagtggtggaagtgtttaccccatggttgtcgctgcgcatcccttggagcctaaccagattgcggtcggcatgagcgatggtgctgttcatgtggtggagccgttggactcagacccaaagtggggagtggcgcctcctcaagacaatggaacccaccccacaatatcagcggctccggcagcagctaacaaaccagaagtctga</cdnaseq> |
| Protein Sequence |
<aaseq>MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDL VQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLK VFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDK LNFPPFKVSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPAN GPLVGPIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQ PPNTAAFLKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDD LPKQVVRNLNQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDI SSCTLPLQAALMKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEID AHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYK ESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGD SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILT TTDCDGGLPASPRLRFNREGSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGP PQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRI TDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHK LWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNPEEATACIALSKNDSYVM SASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVD EVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWSIDGWEKKKSRYIQSPANRSG ALVGDTRVQFHNDQTHILVVHESQLAIYDAKLECLRSWSPREALPAPISSAIYSCDGL LIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGGSVYPMVVAAHPLEPNQIAV GMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTISAAPAAANKPEV</aaseq> |
| Gene Sequence |
<dnaseqindica>557..636#747..926#1010..1123#1228..1386#2091..2271#2355..2481#2575..2684#2782..2920#3020..3129#3255..3324#3500..3573#3711..3806#3935..4030#4294..4421#4675..4909#4996..5163#5527..5634#5721..5870#6158..6268#6371..6550#6680..6808#7072..7167#7361..7546#7684..7856#7973..8174#aatcgggtccaaaaaaaccaaaagcaaagaggaaaataaaagcgagaggagtttcggagagagaaagtgagaggaggaggaggagagagaagagaagagagataagaggaggagaaggcgaacgcggcggctaggtggagaggagaggaaggaagggagcaaacgaaggcggcggcggaaccctagccggaggcgggaggaggggggagacgcgaggtgtctctctggctggtcggattcggccggccgggaggcgtcagatcggtggtcgggccgccggagacggaggagatccggggcatgggcgtggcgacgggggcgggagggtcgtcgtgagctttctgccgccgtcggtttcggcttgagctctgggtttattaattttttttggggttgctgctgttttttttgtggaggtttgagttggtgaggggggtggtttggtgcgcccgtttgaggtggtttttgaggggatttgggagggggatctgccgcggaagcggggtttttagttcggctttgagagctggaggcgcaggctgggatcggcggagccatgtcgtcgcttagcagggagctggttttcctcatcctgcagttcctcgatgaggagaagttcaaggagacggtgcacaagtaagcgtgtttttcggttgattggagtgagggattttgagccattttgttggtgaatatggtttttgattgtttcccattcgtttttggggttatttcggtcggtttaggttggagcaggagtcggccttctacttcaacatgaagcactttgaagacctggtgcagggaggggagtgggacgaggtggagaagtacctcagcgggttcaccaaggtggaggacaaccgctactccatgaaaatattcttcgagatccggaagcagaagtacctcgaagcccttgacaggtaattcattggaagcttgtaatggtggttggctgatggcaacgtgaaattgtgctgagttggattttgttttttggttgcaggcatgatcgagccaaggcggtggagatactcgtgaaggatctcaaggtgtttgcctcattcaatgaggagctgttcaaggagataacacagctgctgacgttggagaattttaggtatgttggtgatgattagtttatagcattttgattgagtaaaatgcccagtgcattggagtaagataaatgtgatagtgtattaatgatgaacacttgaacaggcaaaatgagcagctgtccaagtatggggacacaaagtcagctcggaatatcatgctcatggagctcaagaagcttattgaggcaaacccactgtttcgggacaagctgaatttcccaccatttaaagtttcaagactccgcacattaatcaatcaaaggtgtttggttgatttaagttttggcatgtttttaaattctgtcttttttgttttctcagggatgtgatctgcatgaacaacaatgttaatattcaaataggaaatgctccgtgagccgcattaaattcgcataatgccagcttaaggtttcagtggcacatatattcgtgtatatatgcttttgtgtttggaaaagaatttgtcaccgaaatgatataggtggtttagttttctgtctggtcacaataccatctttgcttggcaacgatgaatacgtaaggaagaggcgtgtgttgtttatatatggaaactacacggctttttaagcatctaacagcttttaggtgacatttatagttcttgattgtccagtaatgaatgggcatgctccaaccaatatgttcggaaattatgagtgatgtttgcctacatacatttatctctcccaattagcatgctctaatggaatacgccaaatatgctgaggttaaatagtatagtaataaattatgttttttcagtgttcttttctaactattgatgctcatgtggatctcctatttgatatttttcatcatcaactactttgtgttttgctgttccgtaatgtagacctgttaggttttctctatgaattatcttccttcagtttcttgtaaaagcatgatgctaattggggtgcgtttctttcttatgtcttgtagtcttaactggcaacatcagctatgcaagaatcccagaccaaaccctgacatcaagacactgtttaccgatcattcttgtgccgctcctaccaatggagcaagagctcctccccctgctaatgggcctcttgttggaccaatccctaagtcagctgcatttcctccaatgggtgctcatgcggtaaggattagattactaccagtaaatagtgcattttattttacactcatctgttactcaagtttcaatcttgattcttgcagccatttcaacctgtggtgtcaccatctccaaatgcaattgcgggttggatgacaaatgcgaacccctctttgccacatgctgcagtcgcacaaggaccacctggtcttgttcaacctccaaacacaggtgagataaacctaaagtaattcagctaactggttgctgtcactggtagcattgagtttgactgtttgcttggattatatatctcctttgcagcggcatttctaaaacatccaaggactccaacaagtgctcctgccattgattatcaatctgcggattctgaacatctgatgaaaagaatgcgtgtaggccaaccagatgaggtatctaatgattttgcatttattgtgtttatcctcttcactattgtctgcagatttgcatgctaaataaattacgatgcattgaaaactatgctaggtgtccttctctggtgcaagccaccctgccaacatttatactcaagatgaccttccaaaacaagttgttcgcaaccttaaccagggttcaaatgttatgagcctggatttccatcctgttcaacaaaccatccttctaggtacatactggaaacacatctgttcgttttcttttaaaactctttgtccatgttctgtccactatatttactgtgttcttgacttctcgtgtaacacagttggaacaaatgttggtgacattgggatatgggaagttggctcacgagaaaggatagctcacaagacattcaaagtttgggatattagttcttgcaccttgcctttgcaggtgacttgcatgatattcttgatctatttttgtgcactaattaccttcttttgttcttctactagcagtatgccgttttcttcttgtgatgtattctaatgctcaatctgtcttaccatgtccaggctgcactgatgaaagatgctgcaatatctgtcaatagatgcctgtggagtcctgatggaagtattttaggtcagaagatctgttcattgtggtatcattcacattttggcatgccatcttagataaatgcaacatttgtgcattgctctgacttgtagtgttttgttttaatgtttcctcgggtggagagattgaattacccccgtctgcaatattgtttcaataagtttgatttgattctcaggtgttgctttttcaaagcatattgttcagacgtatgcattcgtgctcaatggagaattgcggcagcaagcagaggtatatccatacatggatgcttcttaagaataaatatgaatgccttttgcatgtttggattagtgggatgggattttgttcaatgctgctcatcgaaacacttcctgaaaggtttctaactcttgcaaatggcacagattgatgcccacattggtggggttaatgatattgccttctctcaccccaacaagaccctctcaattattacttgtggtgatgataaactaattaaggtgaggtcgttgatatgatacactgcttcaccctttcttgagaaaaagaaatgaacaccatattcatatgatacattgctttatcctcttgaaaaaatgaaccatggatgcacatttgattttggcaggtatgggatgctcagacaggacaaaagcagtacacatttgaaggtcacgaagctccagtatattctgtttgccctcactacaaggagtcaattcaggtatttcaggaatacttcaatttactttcttaggatatgcttctgccgttttaatttgcaatgcgttgtggatctaatctttctggttagtgcatttcattgccattttcatgataaatatgcttattgcattcttggttagcattagtattgcatgttgatttgctttgattttgacatatgcaaaggtagactatgtattatcttttctactattatctgttatatccaatgcatttctttaacattcgttttctttgcagtttatattctctactgccatcgatgggaaaattaaggcatggttatatgactgtttgggctcaagggttgactatgatgctcctggacattggtgtactaccatggcttacagtgctgatggaacaaggtgatgagacactgcaaatgaatatcagctgctaattgttcaagacaataatatagtttctaaaccttcacaaattaagtgaatatattgaataaatagtatagttgtcaggcaggaacaaattaaaatgagaatatgttgcagggtgaaggatatacattttatcgtagcttctctagttgcaatttgttttgtcactccatttcacactttgtatctgtgcgagttgtttgattgtaaattttccctgcaggctcttctcatgtggtactagcaaagatggtgattcacacttggttgagtggaatgagactgagggagctattaagaggacatacaatggtttcaggaagcgctcactgggtgttgtccagtttgatacaacaagaaaccgcttcttggctgctggagatgaattcgttgttaaattctgggatatggataacaccaacatacttacaacaacagattgtgacggtggactgcctgttagtatagtttctcctagtatcatgttgtcggaatcatctacacttaaggttttgtgcttaacctcatgctaataattttgcaggcgagcccacgcttgagattcaacagagaaggttcattgcttgctgttacagcaaatgaaaatggaataaaaatattagccaacactgatggacagcgtttgctaaggatgctagagagcagagcatatgagggctctcgagggccacctcaacaaattaataccaaggtattgatgcatatacttaccatttttttaatgttcccttaaatcctagtgtcattagggtataaagataacattgattcgcgtattcggaaaaaaagataacattgtttctgttctctattataaccttgttttctgatatatctttttttttggttccgtcatctgaaaactggtttgggcctatggctgtttcctgttttctgaagcttcaaaaccactagtatctattcgtttgtaagatgcagcacggtgttctgggcaactgtttagactttagttagtttcaatcaagctgccttgtgttattttcagtgctggctgataatgttgactataacctcatttttgttcttattgtagcccccaattgtcaacacccttggttctgtttccaatgtgtctagtcctatggcagtgaattcggagagacctgatcgggcattgcccacagtgtcaatgagtggcctggtgagtttgcagaatctattttgttgtctgctcactgttcaatacttcaacctgttctgttgctaaatgcatcaaacaaataccaggcgcccatggatgttagcagaaccccagatgttaagccaagaattacagatgaatctgaaaaggttaaaacctggaagttggcagacattggtgactcaggacatctccgagcactgcgtatgccggatacatcagcaacttcaagcaaagtatgttgaacaatgtgtgcttggttgctatcaagtctgttgagttataaatattgatcatgcaataataacctgattaccttaaacatatgagcttgtctttctgtttaatgtctggaagaccgcagtatctgttggtgtttacatgcaattgttgcacaaatgtcaagttttgacctttttttgtcaacatttgataggatcttttttcagtgatagaacaggctgttcagttctgagcaatatgaaatttctgataagcactgtaatttttttttgttgcacaggttgtgcgtctgctgtatacaaataatggggttgcgcttttggctcttggctctaatgctgttcataagctgtggaaatggcaacgcactgataggaatcctaatggcaaggttagagtggagagttgttcttatttggatttcatctgttcttatttggatttcatctgctattctgtttgcttggtttctaaatatatgcatatattgtagtccactgcatctttcactcctcaaatgtggcaaccagcaaatgggattcttatggcaaatgacactagtgatggcaaccccgaagaagcaactgcctgcattgctctgtccaaaaatgattcctatgtgatgtctgcatccggtggcaaagtctcattgttcaacatgatgacattcaaggtatatgatctcttcggtgtgtagcacaatcaattgttattaccctagagcataggtcatgagttactttccataaaaatatgtgttattctatagttgtgacgttaaaatttttgaattttttcacaggtcatgactactttcatggcacctccacctgctgcaactttccttgcattccaccctcaagacaataatatcattgctattggaatggaggactctaccattcaaatttataatgtccgtgttgacgaggtgagtgatattctcttaatggttctcaccgcaagtgattaaactagtcaaataatgtttctcatttcctcttaccagatgaatcagatcttgtgagattttgtagatgacgttttagatatatgtatttttttttttacttataaaccttatgtgcaatagaaatgctcagtgaccttcaactaactgaagattaaaatttaaacagctgagaacttgtttcagtgataattgattccttctgtcttaaccatatggcataggttaaaagcaagcttaagggacattcaaaaaagatcactgggctggcattttcgcagtcaatgaatatgcttgtatcttcaggtgctgatgctcaggtatgaattttcctatatattgtgcagaattaaatgtcactttgtgtgcatacttcatcctccatgctcttgttagtcccatgtctagccatcctttagcctgttttgttaaaaaaaaaagattctgatcgcggtggcaagtggactatatatttgtttctgaatcaatggtcattggaatggaattttgcagctatgtgcttggagcattgatggttgggaaaagaagaaatcaagatatatccaatctccagcaaatcgttctggtgctttagttggtgatacaagggtgcagtttcacaatgaccaaacacatattttggtggttcatgagagccagttggcgatctatgatgcaaagctagagtgcttgcgctcggttagttctcagattaccgtaatttaatatatgcatgtattatattacatcgtgctagtgtgataaacatttgtgatccattcaatcaatcattgtattatgatagttgaatttgacctcattgcttgatcatgcagtggtccccaagagaagcactccctgctccaatttcaagtgcaatatactcatgtgatggtctcctcatctacgccggattttgtgatggtgcaattggagtcttcgaagcagagtctcttaggctgcgatgcaggatagcaccttctgcatacataccaccttccatgtctaggtatgtatagtcccctacatgcctacactgctttgtgtttctgttgggtatggtaatcttagtcctggcgaccatcatgttattgttgatgcccatttttgcatcttttccaacagtggtggaagtgtttaccccatggttgtcgctgcgcatcccttggagcctaaccagattgcggtcggcatgagcgatggtgctgttcatgtggtggagccgttggactcagacccaaagtggggagtggcgcctcctcaagacaatggaacccaccccacaatatcagcggctccggcagcagctaacaaaccagaagtctgaccatccctctagtgacttggccagcagtgccgacattcgttagacccaaagaatggtaggatcgtaggagatagggagaaagaagaaacagtttagatttgtgggatgaggtgaaatgtatcaagtccacagcatctccttttgcctgtggcagcagcacaggtgttgattgatgatgatgatgacatgtctaaattagtttttggttcttttttcccacccccagaaaatcttgacctcacctggcggctgccgcagtgtgtgccggagatggctgccatctttccctcctttgtaaagcttttctagctctgagctagtggtggttggtaccttagagaatgttcttttgttcctgcccttttttgcggggtaggaaggtattcctagtgtaaaatatggttggcatgttggatggtggtatttgtttggcctaatgcgactgattcaaccaattcttcggctcatgtcctatagatgtttgctaaccttgtaggccttgaaatc</dnaseqindica> 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