Os05g0493800

From RiceWiki
Revision as of 20:12, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0493800

Description

Similar to MtN21 nodulin protein-like

Version

NM_001062456.1 GI:115464642 GeneID:4339187

Length

2285 bp

Definition

Oryza sativa Japonica Group Os05g0493800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:24301788..24304072

Sequence Coding Region

24301819..24302015,24302179..24302241,24302634..24302750,24302847..24303264,24303347..24303766

Expression

GEO Profiles:Os05g0493800

Genome Context

<gbrowseImage1> name=NC_008398:24301788..24304072 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:24301788..24304072 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttcctgctgcggcggtttcatggagaaggccaagccctacttcgccatgatctgccttcagttcggctacgccggcatgaacgtgatcaccaaggtctcactcaaccatggcatgagccactacgtactcgtcgtgtaccgccacgccttcgccaccatctccattgctcccttcgcgctgatcctcgagaggaaggtgaggcccaagatgacgtggtcgatcttcttccaaatcttcatcctggcgctactcggaccggtgatcgaccagaacttctactacgccggcctgaagttcaccggcccgaccttcgcctgcgccatgagcaacatcctgccggccatgaccttcgtcatggctgtcatcttcaggatggagaagctggagctgaagaaggtgaggtgccaggccaagatcgccgggacgctggtgacggtggccggcgcgatgctgatgacgctgtacaagggcccgctcatggagatggcgtggagccggcacgccggcgccggcgtggcggaggcccccgccgccgccgccgccgccatctccggcagggactggttcctcggctcgatgttcgtcatcgtcgcgacgctcgcgtgggcgtccctcttcatcctccagacgcacaccatcaagcagtactcggcgcagctgtcgctcaccaccctcatctgcctcgtcggcacgctccaggccgtcgtcgtcaccttcgccatggagcggcgccgcccctccgtctgggccatcggcttcgacatgaacctcctcgccgccgcctacgccggcatcgtgacgtcgagcatcgcgtactacgtgcagggcttggtgatccagaggacggggccggtgttcgcgtcggcgttcagcccgctgatgatgatcatcgtcgccgtcatgggctccttcatcctctccgagcagatctacctcggcggcgtcgtcggcgccgcgctcatcgtcgtcggcctctactccgtgctctggggcaagcacaaggagacccaggagaagcaggctgacaccaagctatcactgcccacttccaaaggcgccgccgccgctgcggaggcggaggagatcaccggcgccggagaagacgacggcgacggcgacgatgacgcggagcgcagcaagaaccaccgctcgagtggtggcgtgaggtcatcatcggactccaatggacatggagctagtgcggtttga</cdnaseq>

Protein Sequence

<aaseq>MASCCGGFMEKAKPYFAMICLQFGYAGMNVITKVSLNHGMSHYV LVVYRHAFATISIAPFALILERKVRPKMTWSIFFQIFILALLGPVIDQNFYYAGLKFT GPTFACAMSNILPAMTFVMAVIFRMEKLELKKVRCQAKIAGTLVTVAGAMLMTLYKGP LMEMAWSRHAGAGVAEAPAAAAAAISGRDWFLGSMFVIVATLAWASLFILQTHTIKQY SAQLSLTTLICLVGTLQAVVVTFAMERRRPSVWAIGFDMNLLAAAYAGIVTSSIAYYV QGLVIQRTGPVFASAFSPLMMIIVAVMGSFILSEQIYLGGVVGAALIVVGLYSVLWGK HKETQEKQADTKLSLPTSKGAAAAAEAEEITGAGEDDGDGDDDAERSKNHRSSGGVRS SSDSNGHGASAV</aaseq>

Gene Sequence

<dnaseqindica>32..228#392..454#847..963#1060..1477#1560..1979#cttcgagattaattaggaagctaagatcgccatggcttcctgctgcggcggtttcatggagaaggccaagccctacttcgccatgatctgccttcagttcggctacgccggcatgaacgtgatcaccaaggtctcactcaaccatggcatgagccactacgtactcgtcgtgtaccgccacgccttcgccaccatctccattgctcccttcgcgctgatcctcgagaggtatacaatccgttgttttaacgtgtactcgtatgtacccttattgtcggtttaagcttctggatgaactggtcggtgcacggacttgattgttattgtacattgatcatatgatgtgtaacggaagctgacgtgtcgctacaaattaatggcattatgacaggaaggtgaggcccaagatgacgtggtcgatcttcttccaaatcttcatcctggcgctactcgggttagtgagacttgtctacttacagcgtaattacactataattatactataattatattttaaagatttttaataaaagaaatcttatacgcaaactccattgcgtatgatcttgcagcgcttttaataaaaaaaatctaatgaaggattgattatgtttagtgagacttagtctagttataatgtagttacactacaatttgtaataagaaaatcttgcagcttatgttttaaaagatagtctcatatgcaaactctaatggaggattgattatgtttctgccaaagaaaaggaaatatttgccaatgaaaatttgcaaaggaaaaaaggaagcatagcttgtctctggaatgacacattggattcacctgttcttggtttgttggtgcagaccggtgatcgaccagaacttctactacgccggcctgaagttcaccggcccgaccttcgcctgcgccatgagcaacatcctgccggccatgaccttcgtcatggctgtcatcttcaggttcgttctccaccacgtacgatctctctcaatgcatccatggcgatcgagagctagatgtgagctggtttgacgttaatgcatggtgttcgacaggatggagaagctggagctgaagaaggtgaggtgccaggccaagatcgccgggacgctggtgacggtggccggcgcgatgctgatgacgctgtacaagggcccgctcatggagatggcgtggagccggcacgccggcgccggcgtggcggaggcccccgccgccgccgccgccgccatctccggcagggactggttcctcggctcgatgttcgtcatcgtcgcgacgctcgcgtgggcgtccctcttcatcctccagacgcacaccatcaagcagtactcggcgcagctgtcgctcaccaccctcatctgcctcgtcggcacgctccaggccgtcgtcgtcaccttcgccatggagcggcgccgcccctccgtctgggccatcggcttcgacatgaacctcctcgccgccgcctacgccgtcagtaccatcctctcccatctccggcgccggcgatcgctagcacgcactctgacgttcttggtttcttggacacatgcagggcatcgtgacgtcgagcatcgcgtactacgtgcagggcttggtgatccagaggacggggccggtgttcgcgtcggcgttcagcccgctgatgatgatcatcgtcgccgtcatgggctccttcatcctctccgagcagatctacctcggcggcgtcgtcggcgccgcgctcatcgtcgtcggcctctactccgtgctctggggcaagcacaaggagacccaggagaagcaggctgacaccaagctatcactgcccacttccaaaggcgccgccgccgctgcggaggcggaggagatcaccggcgccggagaagacgacggcgacggcgacgatgacgcggagcgcagcaagaaccaccgctcgagtggtggcgtgaggtcatcatcggactccaatggacatggagctagtgcggtttgatggacacctaactccccaataatttggttgcggccgtcgacgcgtcgacgcgacggcgaccgtcgccatcgccatgcgtgcgtcgacgtcgatctctccgctttaagatatccgaactgttcgtctacggcgcgtgcactacgacgacgatggcactaagggctcgttaaatttggaaatggaggtttttgtttggtaggaaatttttgatgaacttttactgtgttaatttccctgcaaaatgtaagcgtttgtcacctcgtcagatgttcagaatggtggcatgcatatctctgcttttttttt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0493800, RefSeq:Os05g0493800