Os05g0497100

From RiceWiki
Revision as of 20:12, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0497100

Description

Similar to Chromosome condensation protein

Version

NM_001187544.1 GI:297724218 GeneID:9267154

Length

9240 bp

Definition

Oryza sativa Japonica Group Os05g0497100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:24464113..24473352

Sequence Coding Region

24470541..24470565,24470802..24470878,24470962..24471171,24471262..24471351,24471439..24471560
,24471642..24471797,24471877..24471984,24472054..24472114,24472353..24472487
,24472733..24472820,24472897..24472969,24473232..24473352

Expression

GEO Profiles:Os05g0497100

Genome Context

<gbrowseImage1> name=NC_008398:24464113..24473352 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:24464113..24473352 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttccagcaagctcaaagatcagaactacagcagaaaattgaaaacgcagggggacaagtgctcaaggatcagaagctaaaagttgcaaacatccaatctcaacttgacaaaacaagctcagatatcaaccgccacaaagttagaattactacatgtgagaagttggtgaaaaaattaaccaagggcatcgaggagtctaggaaagaaaaggaaaagcttcttgctgaaaaggagaagatgatgtctattttcaaagagattgagaaggcagcttttactgttcaagaagattataagaaaacacaagagatgatggacaaccataaagatgagcttgacaaaacaaaggtagaatacaacaaattaaagaaagcaatggatgaactgagatccagtgaggtcgatgtggaatacaaactgcaagatacaaaaaagcttgccaaggagtgggaaatgaaggtgaaggcattcaggaaaaagcttgatgacattcagacaaatcttgttaaacacatggatcaaattcaaaaggatgctattgatcatgagaaactgaaagaaacattgagtgacgagcaattcaatgaggcgtgtgacatgagaaaagcagttgagatggtggcactgttggaagccctgcttaaagacttgagtcctaacctggattcaatagcagagtaccgcacaaaggctcgtgtatatggtgaacgcgttgatgagctaaatgccaccactcaggagcgtgatgatcttaaaaagcaatacgatgcattgaggaagagaaggttagatgagttcatggcaggattcaacataatatctttgaaactgaaggagatgtaccagatgattacgcttggaggtgatgctgagctggaacttgttgattccttggacccgttttcagaaggtgttgttttcagtgttagacctcccaagaaaagctggaaaaacattgccaatttatctggtggcgaaaagacgcttagctcactagctctggtgtttgctcttcaccattataaaccaactcctttatatgttatggatgagatagatgctgcgttggactttaagaatgtctccatcgttggacattacgtgaaagaccggaccaaagatgctcagttcattattatcagtctcagaaacaacatgtttgaactagctgataggctggttggcatctacaagacggataattgcaccaagagtataaccatcaatcccggaagctttgcggagagcatgaaggtagtttag</cdnaseq>

Protein Sequence

<aaseq>MFQQAQRSELQQKIENAGGQVLKDQKLKVANIQSQLDKTSSDIN RHKVRITTCEKLVKKLTKGIEESRKEKEKLLAEKEKMMSIFKEIEKAAFTVQEDYKKT QEMMDNHKDELDKTKVEYNKLKKAMDELRSSEVDVEYKLQDTKKLAKEWEMKVKAFRK KLDDIQTNLVKHMDQIQKDAIDHEKLKETLSDEQFNEACDMRKAVEMVALLEALLKDL SPNLDSIAEYRTKARVYGERVDELNATTQERDDLKKQYDALRKRRLDEFMAGFNIISL KLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLA LVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELAD RLVGIYKTDNCTKSITINPGSFAESMKVV</aaseq>

Gene Sequence

<dnaseqindica>6429..6453#6690..6766#6850..7059#7150..7239#7327..7448#7530..7685#7765..7872#7942..8002#8241..8375#8621..8708#8785..8857#9120..9240#atggagagttccccgccgaggtcacccgcgccctcgccagggagggcggggaggccgcggctgttcataaaggagatggtcctccgcaacttcaagtcgtacgcaggggagcagcgcatcggccctttccacaaggtctcgttctctctctcactcgcaagcacacgacacgagcgcgcaagctagctacagtatatcttaattcgtcgcgctcatagtcatagatgacgtattcccccactaccaatccccggttttcgtttgtttttggcgctattcaggaccctccagctgcaatgtcatgtggtgggcttgctttttttacttgacctgtacgatcgttgaaccctaggcacggcagttggatatagcaatttaacttcaattgtgatagcgtaggaggtgaccacgtatactttcatttgagttttccatttcccagtgcctacagaatcctaaataagttaaaaaccgtgttatagcatttttaggaattcgtgttatcttcagtgtggccgttctgcctggcctctagtttatgaagtgaaataccgatacgcgcattgttactaggttctgaacctatgtgacgttttgtttattaggttctgaatttgttggtctagttttggtctcacgaatgttagattagagtggaggtttttgagttgtgcactggttttacatttgttctgaaactttagagtggcatggtcatactccatcagtagtatgttttgggttcactttgttttgtttggagatattttattatgaagagtaagtcacatggtttaatggcatttgttctacccagaaatggaggttccttattcagttctatggcttctatctgaatttgccctttcatacgttgaaatttcagacctaactcttttatcctcagaatgtcgtttctgcagtttaactttcacttgttctgtagtacctaagatataaggaaagcaacgtttatcataattttaaattttactgattttcaagtgcatcaatttaagtggccaaatgactatgatttgtgagtagtaacacatcttacattccagaaatgccgtctaactttataatcgtgtttttatggtgacctgtgcagaattcacaattcttgtgtgtgtaaccatcgtgttctgtgcagaatatcattataaactgtttataggtactatcgatgagtgcactatgcttcaagctcttatgaacataggtctaccactctgtcgctaggatccatgcatcgtataaaagaataaccgctttttcttgctttcagagtttctcagctgttgttgggccaaatggcagcgggaaaagcaatgtcattgatgcgatgctgtttgtgtttgggaagcgtgcaaaacaggtgggcaatattgcttcctaactgtaaatgtttattgatgttcaacatttttctggtcagctcagtggcagatttaagctaatcattgatttattctatctcaaaaagtcattgtatttttttatccattcagcgagtgctagatgccaaagttggcatgtaagtgtaagttattcccaatgtttttaaaggctgggcaacaaactgctactttatgtttgttagtgtgttactgattttgtatgcaaggcgaaaagtaagcttcaaagtctctgcccaaaggtttttgagaatttagtgtaatggtactttcatgatagtaaactagttattgaagagaaatgtatttaatacttgaatacaatggggcccttgtatttcctgtttactattgcccatttcctccaaaggtttttccttaaaagttttggattaaatgctataaaattcacgaataacttaagctcttgagagatgatcttgctatttgttagctactccatattttcttaattcagaacaacctatttaggttgtttcaaatcatagactgtttctgaccagttttccatcattgtagatgcgcctgaacaaggtctcagaactcatacacaattcttctaaccaccagaatctagacagtgctggggtctccgtccattttcaagaaatcattgatttggtatttcttgagccaagtatttagcatttcatattgcttagctagtgccacataatttatttccctccctctatgtccatcataggatgatgggaactacagggctgttgagggcagtgattttatcatcacaagagttgctttccgtgacaacacttctaaatactacataaacgaccgtggaagcaatttcactgaagtaactaaactgttgaagggcaaaggagttgaccttgataataatcgctttttgatccttcaggtttgtgtttctttttccatttacacatgaaaaatgcgcgtgttttgtaagtttaattttggacatatgttgcatattatttagtatgtttacatgactatgagggatataacagacatccatatggtgttatattttatggttttgcactgcataacttccaagttgggcactttcagggtgaggttgaacaaatctccctgatgaaaccaaaatctcaaggtccacatgatgaggggtttctagaatatctggaagacatcattgggacaaatcagtatgttgagaaaattgaagaagcttccaagcagtgagttctttaactgatttaaggcctgttgtcacaatgagtgctttctgtccattctgtaatgaaatctgacatgttctgatacatattagattggaaatgctcaatgaaaaacggacagcatctgtgcagatgctgaagttggctgagaaggaaagagataacttagaggtgacggtctgagggtgatgaattgattcttctggttgaatgacactactgattgatatattttcctgtagagtgcgaaaaatgaggctgaaacatttatgctgaaggaactcttacttttgaaatggcaagagaaggcgaccacattggcttctgatgatgctacctcacacgttgctcagctgcaagagaatgttgcagacttggaaaagaaccttgcctctgaaaggtcatttattgttgtggatgaacatgatattttggtactgagttttatcactaattaatttggttataatccagggaaaaaattcagcatagttctcaaactctgaaggaaatggagtctgtttacaacaaacatgctaaaaggcaagaggtattgtgttgttggaacattacttgtgactcgaaagctgtttattcctagatgttcaggatagagcttttttccccacaagatggttagcgacagattttctactccctttctaacattgccagattataatgctcgtttgtatatttattctctggatgtgtttaggaccttgaaaataatatgaagtcttgcaaggatcaatttaaagagtttgagagaaaagatgtaaaatatagggaggatttgaagcatcttaaacagaagattaagaagctggaggacaaaactgaaaaggtatatttaaaatgatcccatatgtagttcaagcaaagcaacaaagtccaccttcatttttatgcaggatacatcgaaaattgatgaatcaacaaaagaggttgaagaatcatccagtttaattccacaactagaggaagagatacccaaattgcaagaaaaatttaatgaagaagagaaggtgctggagcaaattaaagaaaactctcgaggtgatttttagagcaagacatgtgcctataaatttcttctagtgcagtctgttcctttttatgaccaaacctctctctcttctctcttttttggtaattacagaagagacagagagacttcgttctaaacttactcaagtaaggtctgaacttgaaccatgggaaaatcaaataattgagcataaaggaagcttagatgttgcatctgctgagaaaaaattaatgaaagagaaggtttgtcctgctttgtatttcttttctaattaaaaagttgtggtaggccattgtcaattttctccagtactattcagctacacgaaccacttgactgcccatgaggtcactactcactagaaaacttctattcctagtacgctacagttttgccatcgccaacctggatctgccatatggagaattgagtatggcatgatatttcttgattgctggagtatagtcgaaaacaagagtgctcatctttcttcctctttttgaaaacaactaattgtatctataaatttcaagttgtgtgaattctcactaggaactgtgcattagcacagatggctagagtgcgttcatgcatgcgcgcccacccacgtttgactctccttggagtcgacgcgcgtgtccatttcctctcaattccattgatacgaaagcccctcttttggtatccaactttttttgtggactctcacttgaatgttattaactgttttcagcatgatggagcccgagcagaattaactgctgctcaaaaccagatggaaagcattaaagagcaaatcaaagcgaaggatacatatattatggagcttcaagaaaaaatagagaaacaccatagtgaagcaaatgaggctcgtaaagttgaacaggtaaagcatttgcagacttctctgggccatttctttccctcgagcagtatcactgtattcccatttgctgtggatgatcctgagtttccaatatctcggtatgcataacaggaatgcctaaaacaggaagagtcacttattcctcttgaacaagcagctaggcagaaagttgctgagattaaaaccacaagggattctgaaaagaatcaaggcactgtcttgaaagcaattttgcaagctaaggaatcaaaggaaatagaaggcatttatggcaggctaggtgatcttggcgcaatcgatggtaagatgtaattgttgtagtctcaatttgtgctagaatgtgtgcagttaaacaaccatgccttcttttttcctttggacctgaagacttttccagcttctgtacatttgcccgtttttattatgtcatgaatatatacttccaaattcatcgtattaacagatactagtcattagtcagtgtgtgatattgttagactttggaaagaactggaggttaaacttgctttgcaaatattattgtattttactgattctccgagtaaatatactagagaactaggagaagttcataattgttttatttatgtactctaggtctggattgtgctgcatatcacttaattgtgttagctgttgtgctctgcagcaaagtatgatgttgccatatctacagcatgccctgggcttgattatattgttgttgaaacaaccaattcagctcaagcttgtgttgagttattacgcagaagaaatcttggcattgcaacttttatgatactggtaaaattctggatccttttcatagcgttttcatgtttatttgtatagaagctatcttttcgttgctttcattgcttttggcatgatttggtactcttaccattacaggaaaaacaaacacatcatcttcgtaagctacaggagaaagtaaaaacacctgaaggggttccacgcctctttgatctagtaaaggttaaagatgagaagctcaagttagctttctttgccaccttggggaacactattgttgcaagtgatcttgatcaggtatatacctgaattgtattgtttgttttcgttctattatttgcttcttttgctgcttgttctatcatgtgccttgtatatttgtttctcaaagtactctactgccccactagcattttttatggaaaacttctaagaaggctagaattacttaattgaggacatatcgttctattttcatacaaaaaccgttgcagtgctgcttatatttttattttttataacagtgacatcaataatcgtttttgtcaggctactcgaattgcatatagtgcagccagtgaattccgtcgagtagttacccttgatggtgcactttttgagaagtctggtaccatgagtggtggtggtagcaaaccaagaggtggcaagatgggcacatccatccgggaaagtatttcagaagaggctgttgcaaatgctgaaaatgatcttaataagctagtcgatcaactcaacaggttacgtgaaaaaattaatgatgctaaaaaaggttaccgggccctggaagatgccaaatcccgttttgagatggaactggcaaaagctaaaaaggaggtatgtaaactactttttctgctgtgagattctattttctccttgaggtcagcttccattcatctcttgaaataggttgagagtatgaatgcacaatttagttacaatgaaaagcgacttgactctctgaaagctgcatcacatcccaaagcggacgaggttcgcagaatggaagagctggatgatatcatatctgctgagcaagctgaactaaatagacttgctaaatgttccagcaagctcaaagatcaggtatgtggctatacaggctttttgatcgcatgccaattcataagctaatctgccttagtgagcgtctgcttcaactcacaaattacttcaaatgctccatcattcagaactcactctcccagtctcctgtttgaatctgtgcctgcgtatattgatttttctatgctttgagttgttaactgaaattatttgttacatagctttgacttaagtttgctttctatactaggcatcagaactacagcagaaaattgaaaacgcagggggacaagtgctcaaggatcagaagctaaaagttgcaaacatccaatctgtgagtataagcttcaatgcttgtgtgattctgttcttcgttttggttatctgatgtctaagattttgtgcgtcaaccgccagcaacttgacaaaacaagctcagatatcaaccgccacaaagttagaattactacatgtgagaagttggtgaaaaaattaaccaagggcatcgaggagtctaggaaagaaaaggaaaagcttcttgctgaaaaggagaagatgatgtctattttcaaagagattgagaaggcagcttttactgttcaagaagattataagaaaacacaagaggtagtttagttgtattgccttacaagctgtaaagtgattggattgttttttcatttgttcaatggaaaatgttaatctgtttttttgcagatgatggacaaccataaagatgagcttgacaaaacaaaggtagaatacaacaaattaaagaaagcaatggatgaactgagatccagtgaggtatattatatttatatttagttattatgttaagtcactatgatattgttccttttgacaatatttacattttgtatgtatgtacaggtcgatgtggaatacaaactgcaagatacaaaaaagcttgccaaggagtgggaaatgaaggtgaaggcattcaggaaaaagcttgatgacattcagacaaatcttgttaaacacatggatcagtatgtgtaaatgctattttcaatactgctacgtgttttctgtattgtttctcagactaatgtgcatcttgttattttcagaattcaaaaggatgctattgatcatgagaaactgaaagaaacattgagtgacgagcaattcaatgaggcgtgtgacatgagaaaagcagttgagatggtggcactgttggaagccctgcttaaagacttgagtcctaacctggattcaatagcagagtatgaattaatgatctatacatgtcagtagcattttggcaccaccaatttccttactggcttacattggctggatcaggtaccgcacaaaggctcgtgtatatggtgaacgcgttgatgagctaaatgccaccactcaggagcgtgatgatcttaaaaagcaatacgatgcattgaggaagagaaggtattcctttctttgaatttctatccatgttgctctatttgcctcacatgcaaatatgcattatttcaggttagatgagttcatggcaggattcaacataatatctttgaaactgaaggagatgtaccaggtactttgaaataatgaatacatatatcaaagcatgtaatatggtgcttccattgttttacaatttgaagtctgaccacactttgtaagaaatgaagtctaggaagccaaaaaaagttaaagagttagttgagataagagcaggcttacccaattaactgaaaatctgaaatacttttaccactcaacctctattactaaacaacatgatttcaacagcaattcctttttgtttttagatgattacgcttggaggtgatgctgagctggaacttgttgattccttggacccgttttcagaaggtgttgttttcagtgttagacctcccaagaaaagctggaaaaacattgccaatttatctggtggcgaaaaggtatttttgcaattattattattttttttgtgcaaggatgttagttaatatggccttattttactgacaaagatggttttcaatatcgttacgagaacttgttttctactccataccttgtttccttattcaacagtaatatgagttttacatttcttgttggcattatgttctgtgcatgtgttatctcatctaatatcacttttttagtagattgttactgaactaagctttttatcttgcagacgcttagctcactagctctggtgtttgctcttcaccattataaaccaactcctttatatgttatggatgagatagatgctgcgttgggtaagtttagtggccgtcctcttggcgtttaacatatattaacacttcaatacattaatgacattgctgctcgcagactttaagaatgtctccatcgttggacattacgtgaaagaccggaccaaagatgctcagttcattattatcaggtatgcttatggcagcttagttttcctaatttttctacccgcatgtgccacgccccacttatactccagctgaaaataattttatgagaaatactgagcaaagatctgtcgaagatatatgtttgccaaacattcatccatacaagagacttagttgttcatctacaaaagtaatgctactaaagttaaaaccgaaatatttatacgtgctaagaggcagggtgaaatttccccaatctcacgtttgtcgccctgtctgcagtctcagaaacaacatgtttgaactagctgataggctggttggcatctacaagacggataattgcaccaagagtataaccatcaatcccggaagctttgcggagagcatgaaggtagtttag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0497100, RefSeq:Os05g0497100