Os09g0552600

From RiceWiki
Revision as of 21:03, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0552600

Description

Cupin 1 domain containing protein

Version

NM_001070411.1 GI:115480564 GeneID:4347797

Length

1431 bp

Definition

Oryza sativa Japonica Group Os09g0552600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:22727194..22728624

Sequence Coding Region

22727409..22727529,22727614..22728557

Expression

GEO Profiles:Os09g0552600

Genome Context

<gbrowseImage1> name=NC_008402:22727194..22728624 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:22727194..22728624 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgactgacatgtctcccaaggccggcaagccgctcgtcgagaatgacgctggctcatacctggcgtggtccggcaaggaccagccggccgtcgccggcgagaagctcgggtgcggcctactcgtcctgaagcccctcggcttcgcgctgccgcactacgccgactccggcaagttcggctacgttcttggcggcagcgcggtggtcggggttcttccggcaggggtggacgccagggagagggtggtgcggctcgaggccggcgacgtgatcgccatgcgcgccggggaggtcacgtggtggtacaacgacacggacggtgaggatgtcaccatcgtgttcatgggcgacaccgccggcgccgtcagcccaggcgacatctcgtacttcgtcctcgccggcccgatgggcgtcctgggaggcctcgacgccggcctcctcgccaaggcgtcggggctgacgtcgccggagcaggcggccaccgccttccgcagccagcccgccgcgctgctcaccaggctaaacggcaagctgcacggcgtccgcccacgcgagcacgacaggcacgggctcgtcgtgaacgcggcgcgcgtgccggcggacagcaacaccggcggcgccgccgccgggacgaagacggtcaccgcggcgcacctgccagtgctggcgcagctcgggttcagcgtcgggctcacgcgtctcgacgcgggcgctgcggttcgcgggccctgggtgctccgcgacgccgcggcgcaggcggtgtacgtcgccagggggagcgggcgcgtccaggtcgccggcgccggcggcgcgtcgacgctgctcgacgcggaggtcgcggcggggagcctgctcgtcgtgccccggtacggcgtgtcgctcgcggccgcggacgacgccggcggcatggagctggtgtcgctgatcaaaagccccaggccggcgacggagcacttcaccgggaagggatcggtgatcggcggcctgacggcggagatcgtgcaggcggcgctcaacgtgtcgccggaatttgtggaacagctcaggaccaagtactga</cdnaseq>

Protein Sequence

<aaseq>MAATDMSPKAGKPLVENDAGSYLAWSGKDQPAVAGEKLGCGLLV LKPLGFALPHYADSGKFGYVLGGSAVVGVLPAGVDARERVVRLEAGDVIAMRAGEVTW WYNDTDGEDVTIVFMGDTAGAVSPGDISYFVLAGPMGVLGGLDAGLLAKASGLTSPEQ AATAFRSQPAALLTRLNGKLHGVRPREHDRHGLVVNAARVPADSNTGGAAAGTKTVTA AHLPVLAQLGFSVGLTRLDAGAAVRGPWVLRDAAAQAVYVARGSGRVQVAGAGGASTL LDAEVAAGSLLVVPRYGVSLAAADDAGGMELVSLIKSPRPATEHFTGKGSVIGGLTAE IVQAALNVSPEFVEQLRTKY</aaseq>

Gene Sequence

<dnaseqindica>1096..1216#68..1011#ataacgcagatcagccaagaacgagttcatcttcttcttcgtgttgttgtagcatttgattcgagatatggcggcgactgacatgtctcccaaggccggcaagccgctcgtcgagaatgacgctggctcatacctggcgtggtccggcaaggaccagccggccgtcgccggcgagaagctcgggtgcggcctactcgtcctgaagcccctcggcttcgcgctgccgcactacgccgactccggcaagttcggctacgttcttggcggcagcgcggtggtcggggttcttccggcaggggtggacgccagggagagggtggtgcggctcgaggccggcgacgtgatcgccatgcgcgccggggaggtcacgtggtggtacaacgacacggacggtgaggatgtcaccatcgtgttcatgggcgacaccgccggcgccgtcagcccaggcgacatctcgtacttcgtcctcgccggcccgatgggcgtcctgggaggcctcgacgccggcctcctcgccaaggcgtcggggctgacgtcgccggagcaggcggccaccgccttccgcagccagcccgccgcgctgctcaccaggctaaacggcaagctgcacggcgtccgcccacgcgagcacgacaggcacgggctcgtcgtgaacgcggcgcgcgtgccggcggacagcaacaccggcggcgccgccgccgggacgaagacggtcaccgcggcgcacctgccagtgctggcgcagctcgggttcagcgtcgggctcacgcgtctcgacgcgggcgctgcggttcgcgggccctgggtgctccgcgacgccgcggcgcaggcggtgtacgtcgccagggggagcgggcgcgtccaggtcgccggcgccggcggcgcgtcgacgctgctcgacgcggaggtcgcggcggggagcctgctcgtcgtgccccggtacggcgtgtcgctcgcggccgcggacgacgccggcggcatggagctggtgtcgctgatcaaaagccccaggtaacaagacgagcagcggcaggcaatcgtgacgtcatacgtgagcgcatgagttttcacttgggatttcgttgtgtcatgcaggccggcgacggagcacttcaccgggaagggatcggtgatcggcggcctgacggcggagatcgtgcaggcggcgctcaacgtgtcgccggaatttgtggaacagctcaggaccaagtactgaacgccggatttgatgaatccggtactgtacgtccatgtgtcctctcgtctctatacgtttcctgttttcagcacgcgacgaagttaattaggcagtggctactgctccggtgttcagtcttgacacgtgaatagtctctaaacgaaataattaatcgaaaccatactgtaattagctgaagctgaaactacttgtatgcaatattattataaagt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0552600, RefSeq:Os09g0552600