Os09g0558000

From RiceWiki
Revision as of 21:03, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0558000

Description

Similar to Protein phosphatase type-2C

Version

NM_001070443.1 GI:115480628 GeneID:4347831

Length

4512 bp

Definition

Oryza sativa Japonica Group Os09g0558000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:23005378..23009889

Sequence Coding Region

23005643..23005649,23005733..23005908,23006027..23006081,23006583..23006635,23006718..23006794
,23006877..23007000,23007085..23007210,23007896..23008046,23008147..23008255
,23008826..23008889,23009369..23009485

Expression

GEO Profiles:Os09g0558000

Genome Context

<gbrowseImage1> name=NC_008402:23005378..23009889 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:23005378..23009889 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggggtgtacctgagcacgcccaagacggagaagtactccggcgagggcgggaacgaccgcctccgctacggcctcgcatccatgcagggatggcggacgaccatggaggacgcgcacactgccctgccacgcctggacgaatgcacatccttttttggtgtctatgatggccatggagggaaggcagtatctaagttttgtgcgaaacatctacacttgcaagtactgaaaaatgaggcttattcatctggtgatttggctacttctgtcttaaagtcatttttcagaatggatgagatgatgaaagggcaaagggggtggagggaactggctgaattgggggacaagggacaaaagtttactggcatgttagaaggcataatatggtccccgaaacctggagagtcagataaacctgaggacacttggactgaggagggtcctcattctcattttcctgggccaacatctggaagcactgcttgtgtggctatcataagaaatgatgaactcattgttgcaaatgctggtgattcccggtgtgtgctctcaaggaagggtcgagcttatgacctgtcaaaagatcacaagccagatcttgatgcagaaaaggagaggatactgaatgctggtggtttcattgttgctgggcgggtcaatggaagtttgaacttggcaagggcaataggggatatggaattgaagcagaatgaatttctcccagccgagagacagattgtcactgctgaacctgaattaaacacagttaaactttctgaggatgatgagttcatcgttttagcatgtgatggcatatgggattgcatgtcaagtcaagaagtggtggactttgttcacaaagaaatgaacactgaggatagcctatctgctgtctgcgagaagttgcttgaccattgcttggcacctgtatccggtggtgatggctgtgataatatgacagtgatcatagtcaagttcaagaagccaagcaagtcagctgctacttcaagcacaaatcaatctgtctcttcagaagagatgcgaccaaaaatttga</cdnaseq>

Protein Sequence

<aaseq>MGVYLSTPKTEKYSGEGGNDRLRYGLASMQGWRTTMEDAHTALP RLDECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFFRMDEMM KGQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTWTEEGPHSHFPGPTSGS TACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAG RVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDC MSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAPVSGGDGCDNMTVIIVKFKKPSKSA ATSSTNQSVSSEEMRPKI</aaseq>

Gene Sequence

<dnaseqindica>4241..4247#3982..4157#3809..3863#3255..3307#3096..3172#2890..3013#2680..2805#1844..1994#1635..1743#1001..1064#405..521#acgcaatcttccccgaatcccccacccctcctcatctccctccttcccttccgcctccgcctccgactcctcctctccggctctcctctcctcttcccgtcgcttccgccccctacaaatactcgcccacctcctcctcccctccccttcgcttcctcctcacctcgcctctcctcgcctcgccgccgcctcctccctcgtcgtcgtcgtcgtcgtgagtaccctcctcctcccactcctcatcccctgcttcgattccgcgatgtttggttccgtggcgaagatcgcccgcggggatcgggggagcgccactgtttttgcgattgtgattggggtttgcgtttgtaataacggtgctggttggatgcaggggggtgtttggggggattcggttgggcggcgacatgggggtgtacctgagcacgcccaagacggagaagtactccggcgagggcgggaacgaccgcctccgctacggcctcgcatccatgcagggatggcggacgaccatggaggacgcggtgagttgagttccttccttccttcctccctccctctgtttccccttccacattacattattgttggcttctgctttctggttgattcgccaccaccctaggacccggaattcgcaactgttttttaggtcaggattgtctctcgtagatttgcttgattggttagccgccaaaagttgttgttccggggaactggctacgtggattgattccaattgcgttcgccaatggtggtgttctgttgccccaatgataagactcacggtagccttttgttgcgccttgtcacttgcatttggagtccagtgccgatactagggcagataaattgatcacgatgattagcactaggagtgccgttcgacattgagttctcattgatttggcatgacattagggaccgtttcaggtgaaattagattgaattagtggctgtacctgttctttaaacgcttattgagtgcatccttacattgcagcacactgccctgccacgcctggacgaatgcacatccttttttggtgtctatgatggccatggaggtaagttttttcattgattttctgttcatgtccaactcgctattatgttgcatcttcagatctaaacaaagacgagtgcgatttaatgcctaccatttggtgattgaattaatatcatcttacaactttatccattactagttgcaaatgattggtgcctctgtagtttcgatggcataaccttagcaagttcaattaagcatcgccaactttcacctaacaaactacacatattaggtaacctgagctgtgttgagttgatgataatctcatccattcatttattcatcatctcatccattcatgcagattaggtaaacttagctgtgttgagtttggtagtccagtaacctaacagggaaataacaatcaaacagtccaacattttcacattccctttttgatcgttgtaaaaggtagaagtgcattgagtaggtttaaattgattcatctttttcatatattttttttgaaaccaaaacttaatgcgcttctatgttgtccttttatccacatcatggacaaaactctttatgttgtgacttgacaaactgtcctttgtaattccagggaaggcagtatctaagttttgtgcgaaacatctacacttgcaagtactgaaaaatgaggcttattcatctggtgatttggctacttctgtcttaaagtcatttttcaggtatgtagcatgtacctcttttgaacatgaagtgcttttcagtgaaactatcgtatgcttggtggttttaatgagtctgcaccgctttttaccctttcagaatggatgagatgatgaaagggcaaagggggtggagggaactggctgaattgggggacaagggacaaaagtttactggcatgttagaaggcataatatggtccccgaaacctggagagtcagataaacctgaggacacttggactgaggaggtaaaactgctattctaaaagttccttcattaccaaccatttttgctggatgatggaattgaggggccatctttgatgtcatgatgcttcagagttattccttggtagaacaagcatttgacgggataaaatactaaaaactgattcgatgctagtaattctgaattcatatttaaagaggcttgtcttgagtggtgctgctcttaagtatgtggattggtgaagggggcttggtcctgcttgttatgtgattagggtttctgcagagagggatgtctttcttaaaatacccatttaaatccttaagggatgtctctctagtagttatcttgaaaatatgagaagtgctcttgagtcaggagtgcctatgatcgttgcatctgaaacttaggtcaacactagtttatattagaaggtgatgtccagttatttttaagcatgataacatgtgatctaaaattcatttggtgaaatacattattacaaaatatgtttgtacaaataaggaaaacaaagggaatatgcaccattcgttagcactgagcatatatgtaacttacgaaacatcagctccagagttctatatttttatacatgaccttgtttcctaaaaagaaactgttcttgtgaaattctagtgaatgtagagttcaactaaactgctctaactaagttacttaaccagggtcctcattctcattttcctgggccaacatctggaagcactgcttgtgtggctatcataagaaatgatgaactcattgttgcaaatgctggtgattcccggtgtgtgctctcaaggaagggtcgagtacgtcagtcagacctctatatctctggttttatttgtgaagaaaatgttagaatatgtgtcctgactcagtcttctgcataggcttatgacctgtcaaaagatcacaagccagatcttgatgcagaaaaggagaggatactgaatgctggtggtttcattgttgctgggcgggtcaatggaagtttgaacttggcaagggcaataggtagcaccctctcttctcatcgaaaaacaattccttagctacacgcataatttttatttatccttttgtgcttttccaccaggggatatggaattgaagcagaatgaatttctcccagccgagagacagattgtcactgctgaacctgaattaaacacagtgggttttgttgacaatttctgtcactgtatttgctttggacaacattttttgtaacatggaatttattcggcttgctcaggttaaactttctgaggatgatgagttcatcgttttagcatgtgatggcatatggtatgtcctttgcaccaatcattctctcttgaatatcttattgagataaacaattttagctatttttaccatctggtgtagctgctgctgatttttgacaactcaattttccaacaacagttttagtttattagcagatttgatttttttagtaaaaagaaacaatagttgtaattagggtaagtccaaagaaatgacatcatcttctattggtaaaccatttggacagcccttggagatagtaattcacaattctttttagatgatgtgtactagtgcactgtgtggcgtgcagatgctgatatgtaacttcttttataatggatcccagatacataaacatccagataactttgtatactagatgtgaagctgattttttatacctgcagttattttgaaatggtgctagatcttttgtcaactcttctatggattattctgtattctttgtagtttcactggatagtttatctgagacgtaaatttatcttatgacagggattgcatgtcaagtcaagaagtggtggactttgttcacaaagaaatgaacactgtaagcaactgatattcacagaatttacattatgcactaaaaatatatagttcatagtgttgtgttttgcaatatgcttatgttatggtttcctaatttactgggaaaacaactacaggaggatagcctatctgctgtctgcgagaagttgcttgaccattgcttggcacctgtatccggtggtgatggctgtgataatatgacagtgatcatagtcaagttcaagaagccaagcaagtcagctgctacttcaagcacaaatcaatctgtctcttcagaagagatgcgaccaaagtgagcttcctttaaccgtcgcacctaaaccatattccagatcacgaaatctcgcattgtaaaagcctgagttcccctttcagaatttgagcccttacctttgtgaacagcgagcttgatgatggcccaagcgatccaaacaagtagcaggccgagaccgaaccatggagttccaaccggtgatagacaaaaaggatagtaagtggtgtatataagaaaagggattctattctacagtcactatagggtttgttctttctttcaactagcatctttttcttgcaccacaacctgtaatacatgccatgttgcttaatcgaactgggttgtgtgaaatgcatgaattttccaatgc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0558000, RefSeq:Os09g0558000