Os04g0528300

From RiceWiki
Revision as of 19:56, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0528300

Description

Similar to ABC transporter

Version

NM_001059910.1 GI:115459549 GeneID:4336468

Length

5525 bp

Definition

Oryza sativa Japonica Group Os04g0528300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:26794463..26799987

Sequence Coding Region

26794589..26795023,26796707..26796996,26797094..26797265,26797380..26797502,26797608..26797736
,26797894..26798088,26798237..26798323,26798405..26798677,26799275..26799382
,26799472..26799795

Expression

GEO Profiles:Os04g0528300

Genome Context

<gbrowseImage1> name=NC_008397:26794463..26799987 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:26794463..26799987 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagagcgggaggaggaggaggaggggacacgaggaggacggcggccgggcaggccatggtggagctgcaggcgaacgcgtcgtcggcgggcggcgggatggtggtggggctgagcccgctgagcgagacgctgtggcgggacagcaaggcgatgcccggggcggcggcggcgctcatcggcgacgtgtcggcgaggctgacgtggaaggacctctcggtcaccgtggcgctcggccccggcaagacgcagaccgtgctcgacgagctcaccggctacgccgagccgggctcgctcaccgccctcatggggccctccggctccggcaagtccaccctcctcgacgccctcgccggccgcctcgccgccaacgccttcctctccggcaacgtcctcctcaacggccgcaaggccaagctctccttcggcgccgcggcgtacgtgacgcaggacgacaacttgatcgggacgctgacggtgcgggagacgatcgggtactcggcgatgctgcggctgccggacaagatgccccgggaggacaagcgcgccctggtggagggcaccatcgtggagatgggcctccaggactgcgccgacaccgtcatcggcaactggcacctccgcggcgtcagcggcggcgagaagcgccgcgtcagcatcgccctcgagctcctcatgcgcccccgcctcctcttcctcgacgagcccaccagcggcctcgacagctcgtcggcgttcttcgtgacgcagacgctccgggggctggccagggacgggaggacggtgatcgcctccatccaccagcccagcagcgaggtgttcgagctcttcgacatgctcttcctcctctccagcggcaaaaccgtctacttcggccaagcatcgcaggcatgcgagttcttcgcccagaccggcttcccgtgcccgccactgagaaatccatcggatcatttcctgagatgcgtcaactccgacttcgacaaggtgaaggccaccctgaaaggttccatgaaggcaaggatcgagaggtcggacgatcctctggacaggatgaccacatctgaagccatcagaaagttggttgcatcctacagcaggtcccagtactactacgctgcaagggagagagttaatgacatctcacgactgaaaggaactgtgctggattcaggaggaagccaggctagcttcttgatgcaggcaggcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctgaggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggcaccaagtacacatccatcctggctagggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttcccttcatttgttgaagaaatgaaggttttccaaagggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtcactgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatcattataggagctgggattcagggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactgggcgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgttcttcctcatgatcaaggtaaatgaggatgcactgccatggattcgggggtacattgcaaggaaaaggcttcaaaagaaggaacctcttggcaagacaccctccctcagaggctacgttgtggatccagagcttggtcctaacgaaagctag</cdnaseq>

Protein Sequence

<aaseq>MRAGGGGGGDTRRTAAGQAMVELQANASSAGGGMVVGLSPLSET LWRDSKAMPGAAAALIGDVSARLTWKDLSVTVALGPGKTQTVLDELTGYAEPGSLTAL MGPSGSGKSTLLDALAGRLAANAFLSGNVLLNGRKAKLSFGAAAYVTQDDNLIGTLTV RETIGYSAMLRLPDKMPREDKRALVEGTIVEMGLQDCADTVIGNWHLRGVSGGEKRRV SIALELLMRPRLLFLDEPTSGLDSSSAFFVTQTLRGLARDGRTVIASIHQPSSEVFEL FDMLFLLSSGKTVYFGQASQACEFFAQTGFPCPPLRNPSDHFLRCVNSDFDKVKATLK GSMKARIERSDDPLDRMTTSEAIRKLVASYSRSQYYYAARERVNDISRLKGTVLDSGG SQASFLMQAGTLTKRSFINMSRDFGYYWLRLLIYLLVTVCIGTIYYDVGTKYTSILAR AACTAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAFVISNTISALPFLVLI CFLSGTICYFMVRLHPGFSHYIFFVLNLYASVTVVESLMMAIASVIPNFLMGIIIGAG IQGIFMLVSGYFRLPYDIPKPVWRYPMQYISFHYWALQGQCQNDMDGLVFDNQYPDQP KIPGDFILKYIFQINVHRSKWIDLSVIFSMIFIYRILFFLMIKVNEDALPWIRGYIAR KRLQKKEPLGKTPSLRGYVVDPELGPNES</aaseq>

Gene Sequence

<dnaseqindica>127..561#2245..2534#2632..2803#2918..3040#3146..3274#3432..3626#3775..3861#3943..4215#4813..4920#5010..5333#agcaaaacagccattgcatctctctctctctctctctctctctctctctcgtgttcgtgttcgcttgccatcgcgtcgtcgctcacagctagctagctgatcggtcgctgcgagctagagcgcgccatgagagcgggaggaggaggaggaggggacacgaggaggacggcggccgggcaggccatggtggagctgcaggcgaacgcgtcgtcggcgggcggcgggatggtggtggggctgagcccgctgagcgagacgctgtggcgggacagcaaggcgatgcccggggcggcggcggcgctcatcggcgacgtgtcggcgaggctgacgtggaaggacctctcggtcaccgtggcgctcggccccggcaagacgcagaccgtgctcgacgagctcaccggctacgccgagccgggctcgctcaccgccctcatggggccctccggctccggcaagtccaccctcctcgacgccctcgccggccgcctcgccgccaacgccttcctctccggcaacgtcctcctcaacggccgcaaggccaagctctccttcggcgccgcggtacgcatacaaaaatcatatactcatgtagtactccatacctagcttcttgcttcacttgttttatccaacaaaatctccatttctaggaatcaaaattgtctcgtaccacagcccttgctatactttactgtctccttagctagataagttcagtcatcatccataataagtatccatcccgtttcagcattaatagtcaagctaactaacgaactagctagccctagcctgtgttgatggcgccatgtgcataaacacacagtcacactcccatcaagtggcgttttacgagtaggcgaccacggtccgatcgaccggctaattatcgtcgccatcaaaacatactggacaaacgcaacgcgtacctacgtccgctcgttgatccagcgggttgcagggcttaattacttttgtcatctgccatgtccccgatggcgaaaggctgtaaatataaccccccaacgaagcataagtgcacataacgtgtactgctgcttgttaggtgcagcaatcaattcgatctgttttctctcttcgatctctgattccattcatttggggcgtagtacgcgagatttttttttctcttttctcttttttttataagagatggagaactagtgggagtagtttcgaaagacgagatttagaggttgtggtgcggcgacctacatagcataaatacagacagttggatatacttggatttgttcgtgatcgaacctgtggggaatttatggtgacatgaaccattcagctgcagtgaccgcgtggtttgtcctaccaacgattatactacaggagtaatggaaggaaggagggggacttttctgcatacaaaaaaaatagtattacaaatctgatggtttatcctcatagagcgagacaacttgggccgtttaatttgctggtcgttttcaaatttcaatgccttaataactgaccaaacctgtaggctcaaagctgtaaccaagctcgcccagcatgaaaaaaaagtatcagctcatttctgaatctacgtttttcttttcaggcgggtcttttaatttacagtgtacacaccattattacatgtaccaaaactacggcgccgttttgtaccgtcacatttacgtattatatactcatttaaatgactctactagcggtgccatctcatcactgctctttaaagttattattacaaattgtcctcagatattttctaatatatatactccaatatttagtttccaaaaagtgaataccaataaccaaacaagcagggccggccctgagacagtgcggacggtgcgactgcactgggcctctaaaaattaggggcctccaaaaaatgtatactatggtatcagatctgatagggttagaggaaagatagaaaaccgatcggcgatcgagcatatcgtgacttcttgattgtattttaaactgattagtgtgaaattcattaatgacaatgagtttttaaatattatcttgtatttttatggtgaatgggggccttcattttttttccgtaccgggccactgaaaagtcagggccggccctgcaaacaagcgagaacctattcgaaaaaaaatatttatctatgacatatgataagtgtattttcatttatctatagcaaagcaagtgcatttagcggtgaaacacgaggtttacggagggtttttttttaggcgtacgtgacgcaggacgacaacttgatcgggacgctgacggtgcgggagacgatcgggtactcggcgatgctgcggctgccggacaagatgccccgggaggacaagcgcgccctggtggagggcaccatcgtggagatgggcctccaggactgcgccgacaccgtcatcggcaactggcacctccgcggcgtcagcggcggcgagaagcgccgcgtcagcatcgccctcgagctcctcatgcgcccccgcctcctcttcctcgacgagcccaccagcggcctcgacaggtacgcgtcctccctgcatccagtcacagctgagctgactgatggtgtgcgctggactgaccgcggcgatgtgatgccggcttgatcatgcgcgcagctcgtcggcgttcttcgtgacgcagacgctccgggggctggccagggacgggaggacggtgatcgcctccatccaccagcccagcagcgaggtgttcgagctcttcgacatgctcttcctcctctccagcggcaaaaccgtctacttcggccaagcatcgcaggcatgcgaggtaagtcatctcaccagtcaccagattcagaaagcaaccagtatatatatatatctgtcaccactatcattcgccatggtttctaacgtgaccatcttgtgctcgtgcttgcagttcttcgcccagaccggcttcccgtgcccgccactgagaaatccatcggatcatttcctgagatgcgtcaactccgacttcgacaaggtgaaggccaccctgaaaggttccatgaaggcaagggtaagaagagatcaagacacaccaatgttcatagctgatctgctcaaacttgttcgtgtcacgatgcacttaaaatgatctaatttttgggcattctcattgaagatcgagaggtcggacgatcctctggacaggatgaccacatctgaagccatcagaaagttggttgcatcctacagcaggtcccagtactactacgctgcaagggagagagttaatgacatctcacgactggtacgtgttcttggcgaccctaatacagcagcgcgtattgatatcactctttttcctctctgttttttttttcttgcgcccccacgtatagttaagactgcatccaggacaggcaataacaggatgaacactaacacacccatgttattcgttgcagaaaggaactgtgctggattcaggaggaagccaggctagcttcttgatgcaggcaggcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctgaggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggcaccaagtacacatccatcctggtaagaaatgaaggaactgataagcgattcttatgactggaatgctgtaatagaagtttatattaaaaaaaacatagtcagatgagtaatctgtcatgaatccattaattggctggttctgatgtgttttggtttacactctgaacaggctagggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttcccttcatttgttgaagaaatgaaggtgaattccaagcaaacggtttcatctggatgctagaattaccatgccaaatttgctcagttttcccttgttcattgacaggttttccaaagggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtcactgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatcattataggagctgggattcaggtacatctttatgcttctttcataagctttcttaacctatatctcttggtttattgttgaagtaatggatgttcatttaggtctatctttaaagtactatcatgttaacaatcatattaattaggaccaaatgtattaaatatagtgctatagaaagattggatcgaaacaccgaactcggttgttcccgtctggtacagttcttaagtctgtttttttttccatggcattgtcccagaggatcatgtggcatttaagatatgttcatgaatgagagcttacaaaactttgaaaggttctaatataatctgatatgagtcaaataaaccagcaagcttgacaaagaaataaatgctggacagcacaactttaccgtacgctacccagcattactgtacactactcccatcccagtttaaagacagcttgaggtcgttcaagatcttattcctatgttttgttcttctaactgctgatcctatcctttagtggccgcattacattgctgccttacaaaggaaacgctttttctttcaattaaaatttcagaacttcataactcagtaaacataactcgtcttactttttttttcctagggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactgggcgctgcaggtaaattaaatcccactctttgacaggggaaacacactaaatttttatcttgaagaaaatttgacaccaaacttttatcaacctgacaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgttcttcctcatgatcaaggtaaatgaggatgcactgccatggattcgggggtacattgcaaggaaaaggcttcaaaagaaggaacctcttggcaagacaccctccctcagaggctacgttgtggatccagagcttggtcctaacgaaagctagaatataaactgttagcagatataggcccatttcttgccggttcttggtggaatatgtatctaagatcagagaaactggtatttatacgttttgaaactgaagctcaagctgatcggaatacaggtatatacagacatgtaatgtgtgaaaaatggcatcagagatgcagagttgacacatagctggtggttc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0528300, RefSeq:Os04g0528300