Os04g0540300

From RiceWiki
Revision as of 19:56, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0540300

Description

Phytochelatin synthetase-like conserved region family protein

Version

NM_001059975.1 GI:115459679 GeneID:4336536

Length

2005 bp

Definition

Oryza sativa Japonica Group Os04g0540300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27431366..27433370

Sequence Coding Region

27431366..27431426,27431568..27431644,27431919..27432346,27432735..27433003,27433087..27433370

Expression

GEO Profiles:Os04g0540300

Genome Context

<gbrowseImage1> name=NC_008397:27431366..27433370 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27431366..27433370 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgtggaccagctgatcctgttcgtctttgtgtgctgtttgtcctcgaggtttgctgatgcgtatgatccggtagatccgaatgggaacatcataatcaactgggattttcagagcatcgagaacgtctacacggtcatggtgagcgtccacaatcaccagctgtaccgccacatcgagcagcccgggtggcggctgagctggaggtgggctggcaacgagatcatctggggcatgacgggcgcggaggcgacggagcagggcgactgccaccggatccgtggcgccacccggccgcattgctgcgagaagcaaccggtcatcgtggacctgccccccggcacgccgtacaacaaccaggtctccagctgctgccggggcggcgtgctgtcgtcgctcacgcagaacaaccggacgtccaccgcggcgttccagatggtggtcggcggcttcaggcgcgccacgtaccacgacggcgacaggggccccgcgctgccgtcacgcttcggcgtcggagtgcccgggtactcctgcagcaacgccaccaaggtgaacgcgaccagcgagggcgagaagccggagctgccggccggcgacggtgaggcggtcgcgccggtcttccggtgcaccgaccacatgtgcccagtccgggtgcactggcacgtgaagatcagctaccgtgagtactggagggtgaaggtgacgatcaccaactacaaccaggtcaagaactacagcgactggaacctggtggtgcagcacccgaacctccggagcctgacgcagctgttcagcttcaactaccagcctctcatcgagtacggcaccctgaacgacacggggatgttctgggggatccagtactacaacgagatgatgctgcaggacggtaatgtgcagacggagatgatactgaagaaggacaagagcgacttcaccttctccggtggatgggcgttcccgaggagggtgtacttcgacggccacgagtgcgtcatgccaccgccggatcagtaccccttgctgcccaacggaggcccggactcgcgcgtctcggcggcgcaattgatcgccagctcgtgcttgttgttgccattcattttccttatcatgtaa</cdnaseq>

Protein Sequence

<aaseq>MDVDQLILFVFVCCLSSRFADAYDPVDPNGNIIINWDFQSIENV YTVMVSVHNHQLYRHIEQPGWRLSWRWAGNEIIWGMTGAEATEQGDCHRIRGATRPHC CEKQPVIVDLPPGTPYNNQVSSCCRGGVLSSLTQNNRTSTAAFQMVVGGFRRATYHDG DRGPALPSRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVFRCTDHMCPVR VHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQLFSFNYQPLIEYG TLNDTGMFWGIQYYNEMMLQDGNVQTEMILKKDKSDFTFSGGWAFPRRVYFDGHECVM PPPDQYPLLPNGGPDSRVSAAQLIASSCLLLPFIFLIM</aaseq>

Gene Sequence

<dnaseqindica>1..61#203..279#554..981#1370..1638#1722..2005#atggacgtggaccagctgatcctgttcgtctttgtgtgctgtttgtcctcgaggtttgctggtgagctctgtgatattcaagtcatgtttgtttcccgtgctgtttcttggacatcgccgtcgtgtttgccctccgagtgttgttcttaggtttgattgattgaactacggtcggtgatttgttttctctatgttttgacagatgcgtatgatccggtagatccgaatgggaacatcataatcaactgggattttcagagcatcgagaacgtctacacggtgcgcatgcctgctagtgagtttagtactgccgttaatttttcactgtttgggatcatcccagtagtagatatgcagtcgaataaaagattcagaatttcagacgtaccatcgttgcaactatcctttttatctcgattctaacttttccccattatttcctccggtgaaacttatcattagtacagccgaaatacgatattctgacaaaaaaaatttgacgttcgcaaccgccaacaccacgaatcaatcgatatatcctgtgcttatgcaggtcatggtgagcgtccacaatcaccagctgtaccgccacatcgagcagcccgggtggcggctgagctggaggtgggctggcaacgagatcatctggggcatgacgggcgcggaggcgacggagcagggcgactgccaccggatccgtggcgccacccggccgcattgctgcgagaagcaaccggtcatcgtggacctgccccccggcacgccgtacaacaaccaggtctccagctgctgccggggcggcgtgctgtcgtcgctcacgcagaacaaccggacgtccaccgcggcgttccagatggtggtcggcggcttcaggcgcgccacgtaccacgacggcgacaggggccccgcgctgccgtcacgcttcggcgtcggagtgcccgggtactcctgcagcaacgccaccaaggtgaacgcgaccaggtcaccgatcggcaggcaccggcacgtccagtctctgcgtaaggcttctcccctttctttcttatcgcggcgcgtgcgttgagcgggagttctgagcgattcttgctgccgcgcgcgcgggcgccgtgtgcagtgacatggcaggtcacctgcacgtactcgcagttcatggaggccgcgtcgccgacgtgctgcgtctccctctcgtcgttctacaacagcacgatcgtgccgtgtccgcgttgcagctgcggctgcccacgatcccccacggcgccgcaatgcatcaggcaaaaccccccgcgcaccctcgtttcccacaccgcttaaatcctgtgctatatatcccactcactcatctgcatttttggttggtttaattttccagcgagggcgagaagccggagctgccggccggcgacggtgaggcggtcgcgccggtcttccggtgcaccgaccacatgtgcccagtccgggtgcactggcacgtgaagatcagctaccgtgagtactggagggtgaaggtgacgatcaccaactacaaccaggtcaagaactacagcgactggaacctggtggtgcagcacccgaacctccggagcctgacgcagctgttcagcttcaactaccagcctctcatcgagtacggcaccctgagtaggtatcactcactttagcatgatctccgttcgaattggatgaacagagtgaaccacagaagttgttgtttgattttgcagacgacacggggatgttctgggggatccagtactacaacgagatgatgctgcaggacggtaatgtgcagacggagatgatactgaagaaggacaagagcgacttcaccttctccggtggatgggcgttcccgaggagggtgtacttcgacggccacgagtgcgtcatgccaccgccggatcagtaccccttgctgcccaacggaggcccggactcgcgcgtctcggcggcgcaattgatcgccagctcgtgcttgttgttgccattcattttccttatcatgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0540300, RefSeq:Os04g0540300