Os04g0584600

From RiceWiki
Revision as of 19:58, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0584600

Description

Similar to Calcium dependent protein kinase

Version

NM_001060205.1 GI:115460139 GeneID:4336783

Length

4456 bp

Definition

Oryza sativa Japonica Group Os04g0584600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29929794..29934249

Sequence Coding Region

29930123..29930272,29930378..29930849,29931376..29931519,29931608..29931760,29931906..29932021
,29932497..29932664,29933144..29933368,29933789..29933911

Expression

GEO Profiles:Os04g0584600

Genome Context

<gbrowseImage1> name=NC_008397:29929794..29934249 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29929794..29934249 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcaacgcatgcggcggttcccttagatccaagtacctgagcttcaagcagaccgcgtcgcagcgccacgacaccgacgacaacaacaacgccgccgcggccgactcgccgaagaagccctcccgccctccagcagccgccaagacggacctctacgccatgggcaggaagctcgggcaggggcagttcggcaccacctacctctgcaccgagctgtccactggggtggactacgcctgcaagtccatttccaagcgcaagctcatcaccaaggaggacatcgaagacgttcgccgcgagatccagatcatgcaccatctctcgggccacaagaacgtcgtcgccatcaagggcgcctacgaggaccagctatacgtgcacatcgtcatggagctctgcgccggcggcgagctcttcgatcgcatcatacagcgcggccactacagcgagcggaaggccgccgagctcacgcggatcatcgttggggtcgtcgaggcctgccactcgctcggggtcatgcaccgggacctcaagccagaaaacttcctgcttgccaacaaggacgatgacctctcgctcaaggccatagattttggtctctcagtcttcttcaagcccggtcaaacttttaccgatgttgtcggaagcccatattacgtagctccagaagtgttgttgaaacactatggaccagaagctgatgtatggactgcaggtgtcattctctacattttactaagtggtgtacccccattctgggcagagacacaacaaggaatatttgatgctgtactaaaaggtttcattgattttgattctgatccttggcctgtgatctctgagagcgcaaaggatcttataacaaaaatgctcaatcctcgcccaaaggaacgcttaacagcacatgaagttctatgccatccatggattcgtgatcacggagttgctccagatcggcctcttgatccagctgtcctatctcgcatcaagcagttctctgcaatgaataagttgaagaagatggctttgcgggtaatagctgagagtctctcagaggaggaaatcgctgggttgaaggaaatgtttcagactatggatgctgataacagtggtgcgatcacatatgatgagcttaaagaaggcttgagaaaatatggctcaacacttaaggacaccgagattcgtgatcttatggatgcagcagatatagacaacagcggaacaattgattatatcgaattcattgctgcaacattgcatctcaataaactggagcgagaggaacatcttgtggcagctttttcatattttgacaaagatggaagtggttacatcacagtggatgaactgcagcaagcttgcaaagagcataacatgcccgatgcttttcttgatgatgtcatcaatgaagctgatcaggacaatgatgggcgcattgactatggagaatttgttgccatgatgaccaagggcaatatgggagtcggacgaagaacaatgagaaacagcttgaatatcagcatgagggacgcacctggtgcactctag</cdnaseq>

Protein Sequence

<aaseq>MGNACGGSLRSKYLSFKQTASQRHDTDDNNNAAAADSPKKPSRP PAAAKTDLYAMGRKLGQGQFGTTYLCTELSTGVDYACKSISKRKLITKEDIEDVRREI QIMHHLSGHKNVVAIKGAYEDQLYVHIVMELCAGGELFDRIIQRGHYSERKAAELTRI IVGVVEACHSLGVMHRDLKPENFLLANKDDDLSLKAIDFGLSVFFKPGQTFTDVVGSP YYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGFIDFDSDP WPVISESAKDLITKMLNPRPKERLTAHEVLCHPWIRDHGVAPDRPLDPAVLSRIKQFS AMNKLKKMALRVIAESLSEEEIAGLKEMFQTMDADNSGAITYDELKEGLRKYGSTLKD TEIRDLMDAADIDNSGTIDYIEFIAATLHLNKLEREEHLVAAFSYFDKDGSGYITVDE LQQACKEHNMPDAFLDDVINEADQDNDGRIDYGEFVAMMTKGNMGVGRRTMRNSLNIS MRDAPGAL</aaseq>

Gene Sequence

<dnaseqindica>330..479#585..1056#1583..1726#1815..1967#2113..2228#2704..2871#3351..3575#3996..4118#gttgcgctcgctttcccccaaacgtgacccggccgggagggagaagtcgccatgaagcagcctcccgctgctgctttctctctctcgcctcgttaaaatctctcttccaccccgaaccccatccagttcagttccctctcgatcgcttcccgtgctctcgctctctcgcttgctagatcagagattcccctctgcggcggttgtgaggtttccgcttcggctcgctagctagctctgctgtttctgtgagagccgggagcaccaaccgcgcgtggggtgggtgcccggagctttgatgcgcgtggccgccggtttctccccgtcgtttgatgggcaacgcatgcggcggttcccttagatccaagtacctgagcttcaagcagaccgcgtcgcagcgccacgacaccgacgacaacaacaacgccgccgcggccgactcgccgaagaagccctcccgccctccagcagccgccaagacggacgaccacccagtctccgcgtcggcgccggccgccgccatgaggcgcggccaggcgcccgccgacctcggctcggtgctcggccaccccacccccaacctccgcgacctctacgccatgggcaggaagctcgggcaggggcagttcggcaccacctacctctgcaccgagctgtccactggggtggactacgcctgcaagtccatttccaagcgcaagctcatcaccaaggaggacatcgaagacgttcgccgcgagatccagatcatgcaccatctctcgggccacaagaacgtcgtcgccatcaagggcgcctacgaggaccagctatacgtgcacatcgtcatggagctctgcgccggcggcgagctcttcgatcgcatcatacagcgcggccactacagcgagcggaaggccgccgagctcacgcggatcatcgttggggtcgtcgaggcctgccactcgctcggggtcatgcaccgggacctcaagccagaaaacttcctgcttgccaacaaggacgatgacctctcgctcaaggccatagattttggtctctcagtcttcttcaagcccggtaagctacttatgcagaacacaaaggctttaaactgtgttttaatccactattccgatgcaaaattggtgttgcgattcgcaaatattgtagcgtcacattagagttaacatgcatcggttaatccattgtctgaagaaaaaaaaatggaggcaacatgcaactgcaattctcagtttctgaataattagttgggcatatagtggaacattcaagggtagcactacagcagtgggaacattgttaatgagttcattgcatcctgcaaggtctgaaatacacgttcgttggggagcagctgaatggcagagtaaactgatggaagctagttcactgggaggatttctgagttaaatgtagtggaaaacgatggaagctgaacgacatcttgttctaataaacatctgtaatgctgtattctgtattgtggggaatttgatgtttccataagctaaattaggttactgtaggcatatttatatgagcttgtgcctccttttattcttcgtcttcttttccatctcaggtcaaacttttaccgatgttgtcggaagcccatattacgtagctccagaagtgttgttgaaacactatggaccagaagctgatgtatggactgcaggtgtcattctctacattttactaagtggtgtacccccattctgggcaggtaaattttgatttcccccttcaattaacctgggaagcttgttttctgatgattgtagcttgacatttttcgtatgtatacaatgcagagacacaacaaggaatatttgatgctgtactaaaaggtttcattgattttgattctgatccttggcctgtgatctctgagagcgcaaaggatcttataacaaaaatgctcaatcctcgcccaaaggaacgcttaacagcacatgaagttctatgtatgtttcttttactatattttttttgacaaaattcttttactatgttgtactcgtggtcttatttttctctctaatgcctatccaatcacttgacacatttgcaactgccgggagaaaatgtaacacttcaactcttgctcaggccatccatggattcgtgatcacggagttgctccagatcggcctcttgatccagctgtcctatctcgcatcaagcagttctctgcaatgaataagttgaagaagatggctttgcgggtacgcatgataactttaagcttaagttttaaattaccagctttgtgatacattggcttttttttttctctacaatagactgtttattttgctctatgataagcttttcgcctaatctttcaacttgaactgaatgcatagaaggtgaccttttcactgccagctgttgacaagtttttgtagtgacttttattcactaaaaaatagtactatactcaaagtggtttcttttgggggcaatactatgtctttttgttgtttctgttgaacggtcacccacccaccatatttattaaatgtgaccggatttgttataacactagggaggtatgatggtttgatcatttcttttcagtctccccttaatactagggagctattgaagcaaaccatgttgaattttggaacctgtactgttggtgaagcataattagtgggttttgcatttatgaacaatttgtgtttatcctaccaggtaatagctgagagtctctcagaggaggaaatcgctgggttgaaggaaatgtttcagactatggatgctgataacagtggtgcgatcacatatgatgagcttaaagaaggcttgagaaaatatggctcaacacttaaggacaccgagattcgtgatcttatggatgcagtaagttaacttcaacctatttgaatgctgctttcgatttcttctgtgttagtgacttatattttgaagatacttaaggaccttgaacttaaagttaccttaaaacattctgaataaaatgccttttggtgtcatattacttataagtcggtcgagacttgagaaactcttggttaaaaaaagaaagatatgagaaactcaagctgcttcctgcctcacaagattacttgacttcatggagaagcttgagcgcttaagagagaagtcattacccatacattttcctttttgttggctgttttctttagagtatctatgattagaaaacatgcagcaggcagatcttgccttcttaaatttctttgtaggctgataacttcagcctcatgattgtctttctactgcaaacatttcaaaaacaggttaacatggtaaatcaagaagcttacattgtcccttttgttctgttgtttcatcaggcagatatagacaacagcggaacaattgattatatcgaattcattgctgcaacattgcatctcaataaactggagcgagaggaacatcttgtggcagctttttcatattttgacaaagatggaagtggttacatcacagtggatgaactgcagcaagcttgcaaagagcataacatgcccgatgcttttcttgatgatgtcatcaatgaagctgatcaggacaatgtaagtatagtgttgatacctcctgatgtgctatataactatgttatatattattctggtatagctgggatgtgtacaaaaatgaatgtgcaagcagcggatgcaataaagtttgttcaattagttaagacaattaaaggctttgcattggattgtttagtattgaggtggaaaaccaaccatagtacctgaactacctaggtcttgaaactctttcaatccattattgggatcacatatgctctagtaggtggttagctgtccagtcatgtgctttacttaacaaaggcctagggacttctcttcaataaccagcagaattcattttgttacttcattaatgaatgtttatggttatgttagtagcaaaaagaagttagtgccatgacttgtttgcctaatgttgctcccttttgtcaggatgggcgcattgactatggagaatttgttgccatgatgaccaagggcaatatgggagtcggacgaagaacaatgagaaacagcttgaatatcagcatgagggacgcacctggtgcactctagacttccacgatgtacagcttacggattttagcttcttcctgtcttcctgcccaacgaactcctgcgattttttagcgttgtcagatgtccgcggatgtgtttttctggtggttctgatttaacttgtcaattgattccatggaatgcataacaagatgtccatgccacgctcaaacgaagctgggttgtaaatctctcgtacgccattgctcaactctgaaggtgttcggtgaactagctcgtattctttgtgttgcaatggatgaacttatactggctgtgttgggtgtaattgcattgccaacatttacaggggcatgtgagatcccgctttatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0584600, RefSeq:Os04g0584600