Os07g0549600
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Contents
Annotated Information
Function
Please input function information here. The tapetum, the innermost of four sporophytic layers in the anther wall, comes in direct contact with the developing male gametophyte and is thought to play a crucial role in the development and maturation of microspores. This gene is required for the differentiation of secondary parietal cells to mature tapetal cells and plays a major role in maintaining tapetum development, starting in early meiosis. The transcript is preferentially present in all cell types within the early anthers. This gene is a Major Regulator of Early Anther Development and at the molecular level the meiocyte development is regulated by this gene[1].
Expression
Please input expression information here. It encodes a predicted protein of 227 amino acids and the protein has an apparent molecular mass of 24.9 kD and a pI of 6.5[1]. The region between the 59th and 118th amino acids is predicted to be a bHLH domain, possessing both the HLH domain required for dimerization and a nearby basic domain necessary for target DNA binding. The promoter region comprises a putative TATA box sequence at 406 bp upstream from the start ATG codon and a CAAT box sequence at -471. The upstream region also contains putative regulatory sequences: GTGA motifs (GTGA) at -485 and -48, responsible for pollen specificity; E-box sequences (CANNTG) At - 845, - 702, and - 205, where the MYC class transcription factors bind; a MYBCORE motif (CNGTTR) at -238, in which a petunia MYB protein involved in the regulation of flavonoid biosynthesis also binds[2]; and a MYBGA motif (TAACAAA) at - 945, at which GAMYB binds.
Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os07g0549600 |
|---|---|
| Description |
Basic helix-loop-helix dimerisation region bHLH domain containing protein |
| Version |
NM_001188319.1 GI:297725768 GeneID:9269572 |
| Length |
1698 bp |
| Definition |
Oryza sativa Japonica Group Os07g0549600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 7:22474472..22476169 |
| Sequence Coding Region |
22474473..22474668,22474893..22475089 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008400:22474472..22476169 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008400:22474472..22476169 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>gtcctgaatttcggtggaggtggtgggggagaggaggacggcgacgacggggaggaggagcagcagcagcagcaggcggcggcggcggcgatggggaaggagttcaagtccaagaacctggaggccgagcggcggaggagggggaggctcaacggcaacatcttcgcgctcagggcggtcgtgcccaagatcaccaagatgagcaaggaggccaccttgtcggacgcgatcgaacacatcaagaatctccagaacgaggttcttgagctgcagcgccagctcggcgactcacccggtgaggcttgggagaagcaatgcagcgcgtcctgctctgaatccttcgtccccactgagaacgcccattatcaggtagcagccgctgttctcaagtag</cdnaseq> |
| Protein Sequence |
<aaseq>VLNFGGGGGGEEDGDDGEEEQQQQQAAAAAMGKEFKSKNLEAER RRRGRLNGNIFALRAVVPKITKMSKEATLSDAIEHIKNLQNEVLELQRQLGDSPGEAW EKQCSASCSESFVPTENAHYQVAAAVLK</aaseq> |
| Gene Sequence |
<dnaseqindica>2..197#422..618#ggtcctgaatttcggtggaggtggtgggggagaggaggacggcgacgacggggaggaggagcagcagcagcagcaggcggcggcggcggcgatggggaaggagttcaagtccaagaacctggaggccgagcggcggaggagggggaggctcaacggcaacatcttcgcgctcagggcggtcgtgcccaagatcaccaaggcaaatgcattcttgagcttcctccccacttttactgaccaccaccagctgattcttgcactgatcatacaaacttcgcataatcagatatgaacctgtttatacttacctaaccctctctcgattctctggaaatcgtgattgcttcaccggggaaaggatttcttgattccggtttgtcattcctgacatgttctgatggttggttttctctgctgttgcagatgagcaaggaggccaccttgtcggacgcgatcgaacacatcaagaatctccagaacgaggttcttgagctgcagcgccagctcggcgactcacccggtgaggcttgggagaagcaatgcagcgcgtcctgctctgaatccttcgtccccactgagaacgcccattatcaggtagcagccgctgttctcaagtagtctatgttttccatcaaagttcacacttcagagagtagtggtctgtactctttagaaccccactgtgcgtccctgggactaattctgaacaaccaatgctgcaatctggaaaatatgatcactcaacttcatacaactttaggcccagattgtttcacaattcgattacatgaagtcgcagtctcgcagacaattggcagatatttgaagctccttaacctttttcgcttaatagacaataaacacacctgaagaagggtgaaaaatctaatccttatttggtttagtagactaatgtccaacttcattgatccacagttagactagccatggacttttgtgagaatttttcaacttacattcagacagagcttgatctcagaaatgacttaacatgaacacaaaaaatattggatacagattcatctatttttctgtgacaaaatttacctctgatatctgattcctcagtctctcaacaatctacatttacacagggtcaggtggaattgatctctcttgggtcatgcaagtataacctgaagatcttctggaccaagagggcaggcctcttcaccaaggtgctggaagcactctgcagctacaaagtgcaagtgctcagcctgaacaccatatccttctacggctacgcagagagtttcttcaccatcgaggtaaactaaatatggccaaaattttcctgctacgacacaagattgcattgcatgtagatttcgctgaactttttaacccattcttgtgagttttagtcttctgataagttggccactcactcctgtctccatctgcaggtgaagggtgagcaggatgttgtgatggtggagctgaggagccttctctccagcattgtggaggttccaagcatctgagacactcctgactacaataaactcacatgactcatgttaagagagcacatatgtttctctggaagaaataattccagtagcagttctctttgtagggagaatacagtggtacatgtttgactgaatgactgatgacatagaagggggaaaaaaggactaaattttgtgttgaaattgagcacagtggcac</dnaseqindica> |
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