Os04g0676300

From RiceWiki
Revision as of 20:01, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0676300

Description

Similar to Dihydroorotate dehydrogenase, mitochondrial precursor (EC 1.3.3.1) (Dihydroorotate oxidase) (DHOdehase)

Version

NM_001060790.2 GI:297603557 GeneID:4337396

Length

5279 bp

Definition

Oryza sativa Japonica Group Os04g0676300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:34919300..34924578

Sequence Coding Region

34919300..34919728,34920405..34920487,34920639..34920962,34921080..34921335,34921684..34921764
,34921839..34921946,34922033..34922062,34922208..34922345,34922470..34922507
,34922591..34922690,34924300..34924375,34924436..34924578

Expression

GEO Profiles:Os04g0676300

Genome Context

<gbrowseImage1> name=NC_008397:34919300..34924578 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:34919300..34924578 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtggcgaactgggccaagaagaggcacgaaaccgcaattctgggccgtgcaacccatcttccacgcgcggcccgattctctgattctctcctcgcttaagccctcctcctcctgcttctgcttgctccccacgccgacccagtctcgccgccgccctcgccgccgccaccgccctccccaccctcgcgcgctccgccgccgccaccgcccctcccccccgtcccctgccgggcctccccgcgctgcccccatgtcgtcttccgcagcggcgctcgcctggcgccgctccctccgcgacgccctcctgcgcggctccgcgtggcgcggcgcgcccgccgccaactccgccgccgcgcggttggccagcacggcctccgcatccgaagcggcggctggtccgaagaaggtgcctccgcctccccgcaagggaaggcttttaactggagccatgatagggttggcaattgctggaggtgcctacgtgagtaccgccgatgaagccaagttttgtggctggttattcaagtccacacaactcgtgaatccactttttgcactgcttgatgcagagtttgctcatcgcttggcagttactgctgcttcccatggatttgttccaagagaaaaaagacctgatccatcagttcttgggctagaaatttggggtaggaagtttacaaacccaattggtctagctgctggctttgataaaaacgccgaggcagttgaaggcctgttaggtatgggatttggctttgtggaagttggctctgtgacccctcttcctcaggagggaaatcctaagcctcgcatattcagattacgagaacacggtgcggtaatcaatcgttgcggatttaatagtgaaggaattgtggtagtcgctaagcgtcttggtgctcaacatggtaagcgtaagatggaagagacttcaagctccacatctcccacaaccagcgacgtgaagcaaggagggaaagcagggcctggaatcttgggagtcaatcttgggaagaacaagatcagcgaagatgctactgctgactacgtgcaaggagttcatacactatcacaatatgctgattacttggtcataaatgtctcttccccaaatactcctggtcttcgcaaattacaaggtagaaaacagttgaaagatctcgtgaagaaggtgcaagctgcaagagacgagatgcaatgggctgaagatggtcctccaccattgcttgttaagatcgcaccggacttgtctaagcaagatcttgaggatattgctgcggttgctcttgctcttaggttggatggcctgattatatcaaacactactatttcaagaccttctcctgcagacacacatccattggctcaggaagctggtggactaagtggcaaacctttatttgacctatccactaatgttctcagggagatgtatatccttacccggggaaagattcccctcataggctgtggtggtgtaagtagtggcgaggatgcatacaagaagatccgttctggagctacacttgttcagctttacactgcatttgcctatggtggcccagctcttatacccagaataaagaaggcgtggaaagcagcaggcagcacaggattcttcgagacagcatcgtccaaagccgatctgatgggagtctcaccgagggcgattgcagcagaaaccaacctgttaaaagtgttaagcaaggcgcaagccagtagtaataagcagttgaaacgtttttttgctgcttcaaatggtgccaatgcgcaagcgaccatggtggatgaacctgaggcttga</cdnaseq>

Protein Sequence

<aaseq>MWRTGPRRGTKPQFWAVQPIFHARPDSLILSSLKPSSSCFCLLP TPTQSRRRPRRRHRPPHPRALRRRHRPSPPSPAGPPRAAPMSSSAAALAWRRSLRDAL LRGSAWRGAPAANSAAARLASTASASEAAAGPKKVPPPPRKGRLLTGAMIGLAIAGGA YVSTADEAKFCGWLFKSTQLVNPLFALLDAEFAHRLAVTAASHGFVPREKRPDPSVLG LEIWGRKFTNPIGLAAGFDKNAEAVEGLLGMGFGFVEVGSVTPLPQEGNPKPRIFRLR EHGAVINRCGFNSEGIVVVAKRLGAQHGKRKMEETSSSTSPTTSDVKQGGKAGPGILG VNLGKNKISEDATADYVQGVHTLSQYADYLVINVSSPNTPGLRKLQGRKQLKDLVKKV QAARDEMQWAEDGPPPLLVKIAPDLSKQDLEDIAAVALALRLDGLIISNTTISRPSPA DTHPLAQEAGGLSGKPLFDLSTNVLREMYILTRGKIPLIGCGGVSSGEDAYKKIRSGA TLVQLYTAFAYGGPALIPRIKKAWKAAGSTGFFETASSKADLMGVSPRAIAAETNLLK VLSKAQASSNKQLKRFFAASNGANAQATMVDEPEA</aaseq>

Gene Sequence

<dnaseqindica>1..429#1106..1188#1340..1663#1781..2036#2385..2465#2540..2647#2734..2763#2909..3046#3171..3208#3292..3391#5001..5076#5137..5279#atgtggcgaactgggccaagaagaggcacgaaaccgcaattctgggccgtgcaacccatcttccacgcgcggcccgattctctgattctctcctcgcttaagccctcctcctcctgcttctgcttgctccccacgccgacccagtctcgccgccgccctcgccgccgccaccgccctccccaccctcgcgcgctccgccgccgccaccgcccctcccccccgtcccctgccgggcctccccgcgctgcccccatgtcgtcttccgcagcggcgctcgcctggcgccgctccctccgcgacgccctcctgcgcggctccgcgtggcgcggcgcgcccgccgccaactccgccgccgcgcggttggccagcacggcctccgcatccgaagcggcggctggtccgaagaaggtgcctccgcctccccgcaaggtaagggagccattcctgtttctgatctctcctcggcatttgcgcatacacctcacgtgcgtcgctcttactgagctatgtggcgctgcctttgctcaacaagagttggggaacgcgacatgtggtggatcgattacttatgagtcagtagatggcatactgcgtataaccttagttccatttgctgatggtgatgctgctgatgctagactcaatggtgttgatctgttctacacttccattccttctgaacgcactgcatctttccacagagataactttttcgttagcttttgtaccacacacgtttgtattccgtctggacatgttgatatcatgaaattataaagagaggttcggattgctattgtttgtgtacatgaagaatgcacaatgggcacctgttcttcgagatttccactttttttttaaaaaaaatatatccaggattattcttttcctatagcgccaatctggtattttttgcaattgaatcttgacgatatattaattgattgcttgtgaacgatctcatgtgaggttgagcggcattgtggcaattgctgtattttattcatgtaaaaatagtacctgtattttaccacattgatgatttgttattttgttttaactcatcagtttgtttctgtttctcattacttatttactttggcagggaaggcttttaactggagccatgatagggttggcaattgctggaggtgcctacgtgagtaccgccgatgaagccaagttttggtacatgacattttcaatcataacttctctaccattagttgtacttctctaatgtgcttgaattttgcgttatctgggtatctaggagtttttggtatatttttggctaagtgcctcttcactaataactatatcctttctgatcctgcagtggctggttattcaagtccacacaactcgtgaatccactttttgcactgcttgatgcagagtttgctcatcgcttggcagttactgctgcttcccatggatttgttccaagagaaaaaagacctgatccatcagttcttgggctagaaatttggggtaggaagtttacaaacccaattggtctagctgctggctttgataaaaacgccgaggcagttgaaggcctgttaggtatgggatttggctttgtggaagttggctctgtgacccctcttcctcaggagggaaatcctaagcctcgcatattcagattacgagaacacgggtaagcattttagttgccttctctgtattcaaactgccccatcctaatataatttcaaaaattttgaatgttcctgaataattttttctgctgctatttttttttatttccctgcagtgcggtaatcaatcgttgcggatttaatagtgaaggaattgtggtagtcgctaagcgtcttggtgctcaacatggtaagcgtaagatggaagagacttcaagctccacatctcccacaaccagcgacgtgaagcaaggagggaaagcagggcctggaatcttgggagtcaatcttgggaagaacaagatcagcgaagatgctactgctgactacgtgcaaggagttcatacactatcacaatatgctgattacttggtattcatcctcttctcttcaagaaaacctcacatggatgtgtttctacttgaacctaagcataccatttgttcacattgattggttcacactagttttgcgcacgagtgagagtgggtggggagtgggtgatgggtggggggctttgaggaactgttcagcaacgaaaaagaaaatgcctcttttcggctcttcggtcctgtccatctgttgaatggtttgtgctcagcacatagagtatgggaagtaatgacactcaactacacttacaagggttcctttttttacccctgtttgtatctgccaaggtcggccattatgttaagaatgatatactttgaactgcaggtcataaatgtctcttccccaaatactcctggtcttcgcaaattacaaggtagaaaacagttgaaagatctcgtgaagaaggtcagtcatttccttgaagtgcatcctttgtttgtcttcatacaaactttgtttgacctatgctgcatgtacaggtgcaagctgcaagagacgagatgcaatgggctgaagatggtcctccaccattgcttgttaagatcgcaccggacttgtctaagcaagatcttgaggatattgctgcggtaacatagttaacttagccttgttttctgtgctcttccattattgagttgaaaattttcttatgctttctcattatgttctctaggttgctcttgctcttaggttggatggcctggtaagctatggaattcttccttattgattttactgacgttaactagcacactcctatttaacttccatgcccaatcattttacgcttctcttctggttttgtactgatgtttgtttattcttttattatgttgctaactgcacagattatatcaaacactactatttcaagaccttctcctgcagacacacatccattggctcaggaagctggtggactaagtggcaaacctttatttgacctatccactaatgttctcagggagatgtatatccttacccgggtatatttgttgcccctattgctttcttggatatatagtagcatacctctttgaattaacatgatttttctgtcattgtattttactccaatgtccatgaatgactcctgcatttctgttacagggaaagattcccctcataggctgtggtggtgtaagtaggtaatgtcagtctctgcatttgcttttttaaattaaaataccaacacccaatattcaatcaaagtttatttatgttattacagtggcgaggatgcatacaagaagatccgttctggagctacacttgttcagctttacactgcatttgcctatggtggcccagctcttatacccagaataaaggtcataagtgaaacatatttgttatatcccaagctcgcatcacatgctcactatctttgtcataatggactatatatacactgctagcctcttcttttcccttctattttttttttagagaaagaccatacggcccagcctatattgaaggccaaaacggcaacttttcccttctatatgtgttaaatgtatcacttgtgagttctgatacttgtatattatttgaccattttcaggctgagctggctgaatgtttggaaagagatggtttcaaatctgttcaggaagctgttggggcagatttcaaatgagcttcgtgagatttcaagattgtatggttccctcaagcagcagacttcttctccacagccatgctcactcatttcattgggatgttaatctaaagaggaacaccgactgaaacttcttttgcgggtgcatcactcatcgaccttaagtaatgtgtggtaatatcacgggcgcatacatcatacttagtttttgtttgcttctaagcaagttgtacaacaaattttggttatatgtgtatattttgggcttgtggaggactggaaggtagattaatgctaaggaatggttaaggtctgaaaatgattgttttgcctttcctttttgtctgaagaattatcttcagagattctagttccggctataactttgttccttatgcaacctgtagcatccatcatacactatttctgagaaaaccagtttgaactataattgacatttcatataactactcaggatgttggggggaaaaaaatctgaatatcatgattgaccttgaccgtgcatccctgacacttccggttcattgttttggaatgtacctgtgtcgaaatctaacaaactgcagtgagctttctcttacatctcccaggttgatgcatgaaccgaatactgaacaccaaccatatacggagttggtgagatgtctcgactcatacggatgcagcttctgtcttggttcatatgggcactgcttgtcatgcatgaacatgagtagctatttgtgaagtctagtccatgatgcgtttgattaattttgttatcattgagcatttgtcatgtaatcatgttatactttactaaatgcgtcctcgagccccacagcaatgggcttaaaacttttccttagcctcaattcgtttgtcgttgtatgactgatgctggttgttaatttgaagttggtgcggagcagcgtcaacatgggatattattcgagtctcttcacaattttgtaatggtgatcgttcaagctgctaacgcaatgtaactactcagtgccgtgatctatccagtttaatataacctaattgcgtagtattttacctgggattataatagtaaattaagtatgacatctcttgtgtgtcctctcgtttctgtgaaggaactttccattgcctgattaaaacctggaccattctgctttttgtctaattaatcgccacttgttgcgatgctcgtcaccgccggtgactcttgcaaaaggcattcgttgtagtactcgtaccagtgatactagagtacttaacaaagaaagcaacataataattaattaaagaaagaagttgattttcagaaggcgtggaaagcagcaggcagcacaggattcttcgagacagcatcgtccaaagccgatctgatgggagtctcacgtatgcctttcttttttttttcttccttctctttccttcttttttttttttgggtcatagcgagggcgattgcagcagaaaccaacctgttaaaagtgttaagcaaggcgcaagccagtagtaataagcagttgaaacgtttttttgctgcttcaaatggtgccaatgcgcaagcgaccatggtggatgaacctgaggcttga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0676300, RefSeq:Os04g0676300