Os03g0116500

From RiceWiki
Revision as of 19:27, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0116500

Description

Constitutive photomorphogenic 11

Version

NM_001055295.1 GI:115450318 GeneID:4331403

Length

4067 bp

Definition

Oryza sativa Japonica Group Os03g0116500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:913476..917542

Sequence Coding Region

913806..913985,914061..914295,914965..915050,915138..915254,915935..916255
,917050..917436

Expression

GEO Profiles:Os03g0116500

Genome Context

<gbrowseImage1> name=NC_008396:913476..917542 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:913476..917542 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgtcgagggcgaggtcccggccgcggcggcggaggccgtggccaacggcctcggcggcgcggagccttccccggcgccggtgtccgcggagcagctggacgtggaggcgtacgccgcgcagtacacggggcggacgcgcctggcgcgcctcctgttcatcgccgagaggtgcggggtggaggcggtggagctcgaggcgctgcggatggcgtatgacgagatcaagcggggggaggacaccatgttccaccgggaagtcacgaacaaaatcaacggccgcctcggcccgaaatacgcgctcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcgagagcgagctcaatggctacaggaccaaccttatcaaagagagcatcagaatgggttacaatgacattggtgatttcttctatgctcatggccacctttcagatgccttcaaaagctacatccgtacacgtgattattgtaccacttccaagcatatagttcagatgtgtatgaatgtgattctggttagcattgagttgggacaatttccacatgtttccaactatgttagcaaagcagagcaaaccccagatactttggaccctatcattgttgcaaagttgcgagcagctgcaggattagcctacttggcaacaaagaagtacaaacttgcggcccgtaagtttgttgagacaggacatgaactaggaaacaattattctgaagtcatagctccacaagatgttgctgtctatggtgccctttgtgcacttgcttctttcgaccgttcagacctaaagagcaaagttatcgacaacagtaatttccgaaactttctggagctggtgcctgaagtgagggaacttgttaatgatttctattcaagtcgctatggatcatgtttggagcatcttgagaagctaaagacaaacctcctgttggatattcatttgcacgatcatgtagaaactctatacatggatattcgccacaaagctatcatacagtatacacttccatttatatctgttgatcttaacacgatggctgctgcttttatgacgtccgtgtccatgttggagaaagagctagctgcactgatcactgagaacaaaatacaggctcggatagactcccacaacaagattctttatgcgaggcatgctgaccaaagaaatgcaacttttcaacgtgtccttcaaacaggcaatgagtttgagagagatgttaagtctttgcttctgagagctaacctcatcaaacatgatttcaaccaaagagctggacaaaggaagatgtga</cdnaseq>

Protein Sequence

<aaseq>MDVEGEVPAAAAEAVANGLGGAEPSPAPVSAEQLDVEAYAAQYT GRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTMFHREVTNKINGRLGPKYAL DQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYNDIGDFFYAHGHLSDAFKS YIRTRDYCTTSKHIVQMCMNVILVSIELGQFPHVSNYVSKAEQTPDTLDPIIVAKLRA AAGLAYLATKKYKLAARKFVETGHELGNNYSEVIAPQDVAVYGALCALASFDRSDLKS KVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLDIHLHDHVETLY MDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKELAALITENKIQARIDSHNKIL YARHADQRNATFQRVLQTGNEFERDVKSLLLRANLIKHDFNQRAGQRKM</aaseq>

Gene Sequence

<dnaseqindica>3558..3737#3248..3482#2493..2578#2289..2405#1288..1608#107..493#gcactctcgcatcgtcttctccttcctccgccttccactctctccgtcgcctcgcctcacctatctagggttttggagcaaaacctagccttcgatcccagcgcgcatggacgtcgagggcgaggtcccggccgcggcggcggaggccgtggccaacggcctcggcggcgcggagccttccccggcgccggtgtccgcggagcagctggacgtggaggcgtacgccgcgcagtacacggggcggacgcgcctggcgcgcctcctgttcatcgccgagaggtgcggggtggaggcggtggagctcgaggcgctgcggatggcgtatgacgagatcaagcggggggaggacaccatgttccaccgggaagtcacgaacaaaatcaacggccgcctcggcccgaaatacgcgctcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcgagagcgagctcaatggctacagggtgcgaaaacctaaccacttaatccttatgtttagatgaaatcggtacttcaattgcgttagtttctggttgtgatttgatgagtttgagcattggagctaatccttatgtttagatgaaattggttcttcgtttccgttaattctgctcgtgatatgatgggtttgagcattggaggatatggattatggaagcatgtccacatctcactgactcattatttgcttgatttatgactacggtgttggtgtggagtacgctgagttagttccatgtatgtcctactatgtggatcacggatgactgttctgctttgcgctgattcccaccggagtatgatatatattggtaaatatgttcctaacacgttttttgtgagaaatttaggtaatttgtgtagttagctataacgtttcaatttagatgctattttcttgggatgcattgatgcaaatgcttgttagattacgacgcagcgctgaatttcagattctgagtgtgctgctgtatcagctggttttggatctcagtgcaagtgcatggagtctatgttcaccaaacttttatgattgtggcctctttgggagttgaatcttctgctgatgttgtatatggcacaacattcatcaaagcctgcataaactagcttctgtaatttgtttctcttttcttttgtttggctttgggttattgtttgctttgtggccttgttgtgcgtacttctattctaaggtgatggcatacttattgaagaaactaacttttctggatttattttgtttctcaaattgcagaccaaccttatcaaagagagcatcagaatgggttacaatgacattggtgatttcttctatgctcatggccacctttcagatgccttcaaaagctacatccgtacacgtgattattgtaccacttccaagcatatagttcagatgtgtatgaatgtgattctggttagcattgagttgggacaatttccacatgtttccaactatgttagcaaagcagagcaaaccccagatactttggaccctatcattgttgcaaagttgcgagcagctgcaggattagcctacttggcaacaaagaagtacaaacttgcggcccgtaaggttagtcctctaaccccctatgttacttaccttttccgtaaggttatcaaagcagtaatatgaggcaaggtgcggctctagcatcccttgcatctgcacttgtgtttcagtcgcttctgaaaacccaagctgccattcgttgatgctctgtcctgctctgtcaagttgctgatgtacaagggaagcaatgatggcaatggacagcagcatagtgaaaaacaatgtaatttgcaatgatggctattggcagtggcagtatcgacttcaatctccacccatttcaatttgcctcctttatcccttgatctgcctcttaagatgaggcgacagctgtggtggtcacactggatcttctggacgccttgataacctttcccctcatgcttaaccttttaagtcaatattttgtagatacatatggttagaagtcaatgttatttatttatgtttcaacacaaatttttcatttttttaacttaataaacaatttccaacccgcgtaataaaatttcctagttacatgtgctatggagagctatgtacttgttctagcagatctgtgcacacaaccttttcagagaatgggatgtcaacaattgtgaagtactccgtatgtatttactcatatgtcatgttctttgttagcatagaatttgctgctgaatttttctcccttaaagtttgttgagacaggacatgaactaggaaacaattattctgaagtcatagctccacaagatgttgctgtctatggtgccctttgtgcacttgcttctttcgaccgttcagacctaaaggtttgctttctgttcgcttatttcctgtctgggtgtgttcctttaaaccattgtactcagatatgattgaataaacattttttacagagcaaagttatcgacaacagtaatttccgaaactttctggagctggtgcctgaagtgagggaacttgttaatgatttctattcaaggtaaagttgtagcttcatgtgttccagttagtactcagtgtaccgcataattagatataaacatgtgtatcgctgtttttttataacatgttaaatgaaatccatcaatgaaagatttaatgcatttgttaatccaaaatcgggcataacaccttattccatttcccaagtgaatcacattcagttactgtcctttatatatatattcgtctcatatcagaacagcctcagaggtttgtaataaattaatatcacataatataagcagtcttttccttagaacagtgttgtcctcaaaattctcttgtaacttataagaacatttaatctacagtagtcttgatgtagaatgagaatgattgttcctttcaaattctaaccttattttgtatcctttcaaattctaaccttattttgtacagtatgtcgtagatacatgtgcctttgagtgttgaatctaaaaatatcatgtaaattcgattatgtgctgaaagttgtcatagtccttatttaaaaccacttattcccacgttatagattgtgtacacttcttatttcattccaaagcttttccgaggtcacatttgttcgattcattctgatggattgcagtttacattttttaactgatgtgtgttatatctgctaaccgtgaaatcgttgaaccagtcgctatggatcatgtttggagcatcttgagaagctaaagacaaacctcctgttggatattcatttgcacgatcatgtagaaactctatacatggatattcgccacaaagctatcatacagtatacacttccatttatatctgttgatcttaacacgatggctgctgcttttatgacgtccgtgtccatgttggagaaagagctagctgcactgatcactgagaacaaaatacaggtactttatcctctattggcgatgcctagggattccaggttgtgttaggttttgctcatatgtgattttctgcaggctcggatagactcccacaacaagattctttatgcgaggcatgctgaccaaagaaatgcaacttttcaacgtgtccttcaaacaggcaatgagtttgagagagatgttaagtctttgcttctgagagctaacctcatcaaacatgatttcaaccaaagagctggacaaaggaagatgtgaactctgccactgctgttgctgaaacaaggcgtgccggcttatccttttggacacatttgttttgtgcctaaaagtgtatgggccatggagaagttttggtgatgaatcatgaattagactgatgactgagcatgcaagtctgtttaaatgcgttttaccttttcggacaattccttgcttgctgtggttttaaatatgatgctgtgtaaacagctctggatatttaagcatctagagacttgacagaacgatctgtcacatttgaggccaagctattttttaaaatataaatgcttagagctggtactgtgatgcatagtaactcttagt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0116500, RefSeq:Os03g0116500