Os03g0167200

From RiceWiki
Revision as of 19:29, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0167200

Description

IQ calmodulin-binding region domain containing protein

Version

NM_001055615.1 GI:115450958 GeneID:4331743

Length

4343 bp

Definition

Oryza sativa Japonica Group Os03g0167200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3609519..3613861

Sequence Coding Region

3609611..3610294,3610501..3610602,3610693..3610785,3610915..3611061,3611149..3611239
,3611331..3611419,3611511..3611576,3611858..3611972,3612070..3612515

Expression

GEO Profiles:Os03g0167200

Genome Context

<gbrowseImage1> name=NC_008396:3609519..3613861 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3609519..3613861 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcctgtcaatctcatacccgccagatgactacctgcctacggaagaggacacagaccagatgtttgttcggtctctcagctctgacaatctcagcaccattgagacctttgagtcaccaccggcattactcgactccctgagttcccaaaggcctatcataaaagaatcctttaacttcaaaaaaagtgagggtgatccatttcatgttgaaactacagtatccttgatgagtcctaaacccggcaaggagaagagttgcacccataaacgcactatcctaccaagatatgggtcaatggaatacttgccaccacattctccagtggttgggatgatcagcccgaagcaccaggccgcagcagtaagagtgcagaaggtatacaagagcttcaggactaggcggcaacttgctgattgcgctgttcttgttgaacaacgctggtggaaactgatagatttcgcactgctcaagcacaattcagtatccttttttgaggaggagaagccagaatctgccctctcaaggtggtctcgggctagaacgaaagctgcgaaggtaggtaaaggtctgtcgaaggatgaaaaggctcagaagctcgctttgcagcactggctcgaagctattgaccctcggcatcggtatggtcacaacctccattactactaccaacattggcttcactgcgaaagcaaacaacctttcttctactggttggatgtgggtgaaggaaaagacgtaagtatggaggaccactgccctagatggaagctgttgcagcaatgcatcaggtatcttggccctaaagagagggagttctatgaggtagtaattgagaacaagaaactgctgtacaagatgagccgcaagattgtcgacacttctgagggccccaagaattcgaaatggatcttcgtgttgagcacaacaagagttctatacattggcacgaagagcaagggcacattccagcactccagcttccttgctggtggagccacatctgctgccgggagactagttgtagataatggaatcctaaaggctgtctggccacatagcgggcactaccgtcctacggaggcaaacttccgcgaattcatgatgtatctgaagaagagaaacgtagatcttgccaatatcaagttgagcccatcagaagacgaagaggacgagtgtctcaggtccaggagtggccgctcccagctcgagccaaccgagccaggaaagcctgagaaggaagaagacgccacggccgacgacaatggcactaccaccgtggccgcgcaagccgcgccaccctccaccaccggcggtgagccagccacgccggtgatgaagaggtcatcctccggcaaccgcctgcagcgcaagcggccgccgaggctgacgctggacaagagccggctggccaagggcgtggcggagcaggacgccgggtcgttcggcgaccgcctggacttctgcaaggtgaacctgttccgcggcggcgaggaggcggaggaggcggtggtggtgccgcaggagaagatcctccgccggctcaactccaggatgaccatgaactcgtaccagctcgggaagcagctgtcgctccggtggaccaccggcgccgggccgcggatcggctgcgtccgcgactacccgccggagctccagttccgggtgatggagcagatcagcctgactccgcgcggcggcgccgggccactgaggctcgggtcgacggcgaccccccggcagagcccctgcgcgccgctcccgtcgccggcgccgctctacgccgccgccgggactcccacctcgctgctgcagcacggtgcagcctaa</cdnaseq>

Protein Sequence

<aaseq>MGLSISYPPDDYLPTEEDTDQMFVRSLSSDNLSTIETFESPPAL LDSLSSQRPIIKESFNFKKSEGDPFHVETTVSLMSPKPGKEKSCTHKRTILPRYGSME YLPPHSPVVGMISPKHQAAAVRVQKVYKSFRTRRQLADCAVLVEQRWWKLIDFALLKH NSVSFFEEEKPESALSRWSRARTKAAKVGKGLSKDEKAQKLALQHWLEAIDPRHRYGH NLHYYYQHWLHCESKQPFFYWLDVGEGKDVSMEDHCPRWKLLQQCIRYLGPKEREFYE VVIENKKLLYKMSRKIVDTSEGPKNSKWIFVLSTTRVLYIGTKSKGTFQHSSFLAGGA TSAAGRLVVDNGILKAVWPHSGHYRPTEANFREFMMYLKKRNVDLANIKLSPSEDEED ECLRSRSGRSQLEPTEPGKPEKEEDATADDNGTTTVAAQAAPPSTTGGEPATPVMKRS SSGNRLQRKRPPRLTLDKSRLAKGVAEQDAGSFGDRLDFCKVNLFRGGEEAEEAVVVP QEKILRRLNSRMTMNSYQLGKQLSLRWTTGAGPRIGCVRDYPPELQFRVMEQISLTPR GGAGPLRLGSTATPRQSPCAPLPSPAPLYAAAGTPTSLLQHGAA</aaseq>

Gene Sequence

<dnaseqindica>3568..4251#3260..3361#3077..3169#2801..2947#2623..2713#2443..2531#2286..2351#1890..2004#1347..1792#ggactcgtctctttcctcgggctcaagcgctcggcggcggccggccgccggcggggtggcgcggccgaggcccgagggggaaggagacggcggcggtgtgtggcgtggccggtacgcctccatgccttatcggtgctcgtgttccttcgcgtcgaggagtggggaagcggctggagaaatggctctccggcttccggcggcgaggccgccatgttcgcctagatgattaacatcgttgagcccggcgttgctgtgttcgggagtcggggacatcagcagcggcggcgcttcgtctcccagatggtaacaaatctctcatttctatacacacgcagctagagctagttcccatctgattgctttggtcaagtagcttggcacttggcagagtagccgtgttgtcttgtcattgattcttgagtaaaatttccttacatgacgaatcgataacaagaaatttgaaaaaaaaatctagcaacaaattatgccatcagattttagatctctttgatgtctgcagctctgcaatttgggttctagttatacctaattatccattccatgtttgttcaaaaacgattaaaagaacatgtgttgtgtatttttaaccactccaaatatatcataagctacctcccttttctttctccttttcttttccctcggagcattcaatcacctcagaccgtgcattgttatttatagggtgaagacagcaacaaacccatccccgtgttcatctgccctcttccatggtcattacctactctccatttatgcctggttcccctacatttgctctcattcgtcatgcaaattttcagattccttttagctttcttcctcgcagacctctcatcaggaggttctgttgggtggatggtgctgtaccctttgagctaggtaggtatggctgatgttctttgattttgaatcttgtttacagaaatgactctccgtgatcttcttggatttttttatctatatcgtttattattgaaactaggtgatttaagaaacaagaaatgagatggatcatttttatatgaaggataagaacatatttcatagagcccatttcacataatgtattttgatctcccttgataagatataaaacaaaggaaggaagacatcaaatgtgttgttaaaatgaccctgtcaactcagtcggcctacatttggtctcccttgattttccaatgtaaaacaggtcttggctcatctataaagtatgcattggtgcagagctccagagcgacagaagtaaggcttatcagaagaaactatagggcggaaagcaaacaaaaaaaactgtcacgttattgcattttttcagtcaggaaatgggcctgtcaatctcatacccgccagatgactacctgcctacggaagaggacacagaccagatgtttgttcggtctctcagctctgacaatctcagcaccattgagacctttgagtcaccaccggcattactcgactccctgagttcccaaaggcctatcataaaagaatcctttaacttcaaaaaaagtgagggtgatccatttcatgttgaaactacagtatccttgatgagtcctaaacccggcaaggagaagagttgcacccataaacgcactatcctaccaagatatgggtcaatggaatacttgccaccacattctccagtggttgggatgatcagcccgaagcaccaggccgcagcagtaagagtgcagaaggtatacaagagcttcaggactaggcggcaacttgctgattgcgctgttcttgttgaacaacgctggtatgttggattcataagctattcatgcattgtcatatttgatgcggtgtatttctcattgtgataactttgcctgaattttgtgatgctgaatcaggtggaaactgatagatttcgcactgctcaagcacaattcagtatccttttttgaggaggagaagccagaatctgccctctcaaggtggtctcgggctagaacgaaagctgcgaaggtatagtcatgtgtttacacattcttttggctaacctgaaccttctgatcttaaaaaatagagaattgctcatagcagtgttctttgtatacaaaactgttggcattgctggtgctgtcattgacatatatttctggcattatgttcaagtattctgaatcattcaaactgataaactgaaatggtgcagttctgtttgttctatgcactacaggcatactataatagtgttaccgaatactgataagagtactgtttgtgcttttttgttcttatgttaggtaggtaaaggtctgtcgaaggatgaaaaggctcagaagctcgctttgcagcactggctcgaagctgtatgtttcagaactctcaaaacattgtatccaaacataattttatgatagcacttcactaaccagaagttcattgatgacttttggacagattgaccctcggcatcggtatggtcacaacctccattactactaccaacattggcttcactgcgaaagcaaacaacctttcttctactggtaaaattcatgcgaaagcgtgaaactctagagtgtttgtgaaccagatgaacaaacaaattggtgatttctgaacttacgattatgataggttggatgtgggtgaaggaaaagacgtaagtatggaggaccactgccctagatggaagctgttgcagcaatgcatcaggtatcttggccctgtaagttgctgttcctgcgaaccaatcattctgaaatcttaaagtggagaaggttgcactctgaacagagattactactttgtgcagaaagagagggagttctatgaggtagtaattgagaacaagaaactgctgtacaagatgagccgcaagattgtcgacacttctgagggccccaagaattcgaaatggatcttcgtgttgagcacaacaagagttctatacattggcacggtaccttttttgagcattaagcagttagtgaatattggcatttgtcacttgtcaatagtacatattcagtacatgaaccataatagtgaaacgtcacctatcactgatgaaatggatacattcttgcagaagagcaagggcacattccagcactccagcttccttgctggtggagccacatctgctgccgggagactagttgtagataatggaatcctaaaggtgcatggaactgcagattatgtggttttatttcttggtctgcacagcagcaaagacaccttttctgattcagttatccacctttctcaggctgtctggccacatagcgggcactaccgtcctacggaggcaaacttccgcgaattcatgatgtatctgaagaagagaaacgtagatcttgccaatatcaaggtgagtagacaacggtaaattctatcttcttacattctgttttagagaagggtattttttacatgccaacaaaagaaagacttcttatgagccaattagttttaagtgtttaagatttcctttcaaaagatcagtttaagatttcctagccttgatatatattctgacatcagaacatataattgggtttgttggttttgctacagttgagcccatcagaagacgaagaggacgagtgtctcaggtccaggagtggccgctcccagctcgagccaaccgagccaggaaagcctgagaaggaagaagacgccacggccgacgacaatggcactaccaccgtggccgcgcaagccgcgccaccctccaccaccggcggtgagccagccacgccggtgatgaagaggtcatcctccggcaaccgcctgcagcgcaagcggccgccgaggctgacgctggacaagagccggctggccaagggcgtggcggagcaggacgccgggtcgttcggcgaccgcctggacttctgcaaggtgaacctgttccgcggcggcgaggaggcggaggaggcggtggtggtgccgcaggagaagatcctccgccggctcaactccaggatgaccatgaactcgtaccagctcgggaagcagctgtcgctccggtggaccaccggcgccgggccgcggatcggctgcgtccgcgactacccgccggagctccagttccgggtgatggagcagatcagcctgactccgcgcggcggcgccgggccactgaggctcgggtcgacggcgaccccccggcagagcccctgcgcgccgctcccgtcgccggcgccgctctacgccgccgccgggactcccacctcgctgctgcagcacggtgcagcctaaaagtccttactttgtgggcgtattcagagtttcagacagtataaaattcgagccaataaccaatccatgcatcaattcagctaatattatcg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0167200, RefSeq:Os03g0167200