Os03g0195100

From RiceWiki
Revision as of 19:30, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0195100

Description

Similar to Plastid aminotransferase (Fragment)

Version

NM_001055790.1 GI:115451308 GeneID:4331930

Length

4566 bp

Definition

Oryza sativa Japonica Group Os03g0195100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:4963808..4968373

Sequence Coding Region

4963808..4963830,4963955..4964013,4964123..4964193,4964307..4964423,4966893..4966955
,4967141..4967245,4967390..4967440,4967540..4968373

Expression

GEO Profiles:Os03g0195100

Genome Context

<gbrowseImage1> name=NC_008396:4963808..4968373 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:4963808..4968373 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctgtcaatatgatctccaagttacttgagaaggctgttcttccagcactggatgttgcacctcctgtaaaaataggagggcctcggcgtacgagcgtgctgcgcaatccaaacatggagaagcttcagaaggggtacttattcccagagattagcatcaaacgtgaggaacacctgaagaagtacccagatgcgaaggtgataagtttgggtatcggcgacacaactgaacccataccaagcatcgtaacatcagctatggctgagtatgctcttgcattgtcaactcctgaaggataccaaggttatggaccagaacaaggccacaagaatctgaggaaggaaattgctgacaaggtgtaccctgacatggggataaaagagagtgaagttttcatttcagacggagcacagtgtgacattgctcgtcttcagacgctgttcggtccaaacgtcaccattgccgtccaagatcccacatttccggggtacgtggacaatggcgtgatcatggggcagaccggcaaggcggacgacggcggcaggtacgccggcatcgagtacatgcggtgcgcgccggagaacgccttcttcccggacctgtcgcgggtgcggcggaccgacgtgatcttcttctgctcgcccaacaatccgacggggcacgcggcgtcgagggagcagctccggcagctggtggagctcgcgcggcggaacggctccatcatcgtcttcgactccgcctactcgtcctacatctcctcctcctcgtcgtcctccacgccgaggtccatctacgagatccccggcgcgagggaggtggcgatcgaggtgtcgtccttctccaagttcgccgggttcacgggcgtccggctggggtgggctgtggtgcccgacgagctgctctactccgacggggtccccgtggcgcgggacttcgaccgcgtggtgtgcacgtgcttcaacggcgcgtcgggcatcgcgcaggcgggcggggtggcgtgcctgtcgacggaggaaggccgcggcgcagtggcgcgggtggtcggggtgtacagggagaacgcgcgggtgctggtggagacgttcaggtcgctggggaaggaggtgcacggcggcggcgacgcgccgtacgtgtgggtgaggttcccggggcggcggtcgtgggacgtgttcgcggagatcctggagaagacgcacgtcatcaccgtgcctggcagcgggttcggccccggcggcgagggcttcatcagggtcagcgccttcaacagcagggacaaggtcctcgaagcgtgccaacgcctcaaaagcttcctcgcatga</cdnaseq>

Protein Sequence

<aaseq>MPVNMISKLLEKAVLPALDVAPPVKIGGPRRTSVLRNPNMEKLQ KGYLFPEISIKREEHLKKYPDAKVISLGIGDTTEPIPSIVTSAMAEYALALSTPEGYQ GYGPEQGHKNLRKEIADKVYPDMGIKESEVFISDGAQCDIARLQTLFGPNVTIAVQDP TFPGYVDNGVIMGQTGKADDGGRYAGIEYMRCAPENAFFPDLSRVRRTDVIFFCSPNN PTGHAASREQLRQLVELARRNGSIIVFDSAYSSYISSSSSSSTPRSIYEIPGAREVAI EVSSFSKFAGFTGVRLGWAVVPDELLYSDGVPVARDFDRVVCTCFNGASGIAQAGGVA CLSTEEGRGAVARVVGVYRENARVLVETFRSLGKEVHGGGDAPYVWVRFPGRRSWDVF AEILEKTHVITVPGSGFGPGGEGFIRVSAFNSRDKVLEACQRLKSFLA</aaseq>

Gene Sequence

<dnaseqindica>1..23#148..206#316..386#500..616#3086..3148#3334..3438#3583..3633#3733..4566#atgcctgtcaatatgatctccaagtacggcatacatgttgcatatatttgatcgatgcatatgaacagtagcagtatatagcctgtagtgatttcaagtcatttcagttagtctttccctgaatttgtttgattcctgcatctgtaggttacttgagaaggctgttcttccagcactggatgttgcacctcctgtaaaaataggaggtagatttatcatactatggttcttcttaatttgttgtttgtagcattcttgccatctcatggcacgtttaacttacttttgcatgcgtgttactactacaaaattcagggcctcggcgtacgagcgtgctgcgcaatccaaacatggagaagcttcagaaggggtacttattcccagaggtacagaattaatcacgatttcaccaaccttagtttgagcatatgattctccagacacttgatgataaattgataatatacgttaatttgtgctcctcgttttgatggtttagattagcatcaaacgtgaggaacacctgaagaagtacccagatgcgaaggtgataagtttgggtatcggcgacacaactgaacccataccaagcatcgtaacatcagctatggctgaggtatttatttactctacttctgtagttctgttttctctcttgcattggagcatgcatgcatgtttttccttttctgaaaaaggagaagcatgtgtaaaaatgtttaaccaaggaaagctacatgaggaatctcaagcaacaaatagctggtcatctggttcttaatggcgtagctagctagatggcactgtggtctatggaccacctaaaaatttgatcaagattaaaactataatatatgtgctagttattaatataataaaaattgtatagtggaccacccatttaattggcctattacatatagatggatcacctttactttaaatcctagctacgccactcttggttcttgtcatagcacgaattaagaatttaacatttggacacatggttgttctatgttttcccgtggatcatctttactctaaatactagctacgtcattattggttcttgtcatagcacgaattaagaatttgacatttggacacatggttgttctatgttttcccgtccatcaacattaaccttttgttgttgttgttcaccaatgcaaagattctctacaatcgatctgctagctgcaacagcattttgttaaactgagcacgaatactaaagcaaagcataccattttgtggacctctgcttagtacacctttcttttaataagtacaccttattaatataataattattgttttaaacaagagtgaagtccactcttggattatgaatcgtttttaaaatatttatcttttaaatatggtgactacatgtacagattagtcttaaaaaatattttaataaaataatatatttgttaacacttttatacaaattataatgaaaaataatggtcaaaattattttttcagagaccgtgctcttatccaaactgacaagtattatcaacccgtatggagtatacaaatgtagcaaaatggttatacgtagtggggcgaactagggttaaaaaccagcctaatattaactactttgtttaatattatatttttttgtcttaaaataaatgtgcaccgatgagatgggtgcaaatttgcattaacctaaaattaagtgaataaaataaattacttggcccaaccaatattcagtctgttagccttcattttgatttatttttatgacgctacatgcttgctccaccttttatatgagccaacgtactggtctgaaaattcttaagctttttacaaaagagaagcactcaagcaagggctcacttgcgaagaactgcacaagaggtttcgtcctaaatatagaagaggattacgttgtaatatctccgtcccataaaaattgtatttctagctccaaggctttgtcccacaaaaattgtatttctagccatgtggggcccaaccaattgattcatctatataagtttccttccatcccacataatttgggctgctaatgcttgtaattttattaagtatgctaattatatgggttaattctctcaaacttccttttaatcatttgtatatatggaatatgtgcatgcagtgggttcattaaataaggttattgtggtcatttttcaatcctactattttgtcctaaattagctagaaatgcaatttttataggacggaggtagtactaaactactactaatatatattttttttcaaggaagtgtcaagattcttcttctccatcacttggaaatttagctgtacctgtccttttgacttgtcacactcttatctcatgccaaatttgttcactttttctaccaaaaaaacacaaactttgcactctctatcaacccctttttctcttgtcagaaccaagataccctgatgtcactgcagagacatcacctcatccacatcatgcatgccttccagttctccctcttttcctcatatactgccataatctcctgcaattttagtgcaagtgccaaactgctaatgggaagatgacaaggagattaggagaagagcactatcatatctaattattccatgatctgtactacgtccactgcatgtgcatggctgctgctgatttaactaaatatgtagtgagctagctttggagaaagatttgttgtagactagtatcgcatttgtggattgacttgcaattggtggtcaattaatcctaatatacaacctaagtgctttcagatcactggctgtgacaccggcggttttctgctcgtgatgctgttgacatgacaaaatggaaaatacaatccgatgattgcgactaaggaaaattttaagcttacttgacttagggtgggcctatagggtattggtttattcctggagttaaccaatcctagcccaaaagaatttatcagaagaaagcctaaaaagttcagatttttttcagatacaatttacttgaatatatttttctcttaaataggatgttccatttccattttgtagagtaagaaacattttatcctattttttgcagtatgctcttgcattgtcaactcctgaaggataccaaggttatggaccagaacaaggccacaaggtaatacaaaacactgaaaacccccaactctgaagaaatctaggtagaacatggtttatcatccttgttttgaagaacaggttttcatcctgtttgcaaagaaaatactacagagatttcaaagagatataactatgacatttcactaacacaagatatatatgctctttgaaatgcatgtgcagaatctgaggaaggaaattgctgacaaggtgtaccctgacatggggataaaagagagtgaagttttcatttcagacggagcacagtgtgacattgctcgtcttcaggtattgcaagttatttcgcgtgctttcctacttaccaactgatcaaattcacttaatattctgagatgtgaaatgatacaaatctcatctttcatcttccttatctaaaaaaaaaaatctcaccattctttctcctggattcagacgctgttcggtccaaacgtcaccattgccgtccaagatcccacatttccggtataataacaaacctatccattaattacctgtgtctaattgcgaataaataaataaagtagtaggattatatgcgtaataagtaaaccattcgtgcaggggtacgtggacaatggcgtgatcatggggcagaccggcaaggcggacgacggcggcaggtacgccggcatcgagtacatgcggtgcgcgccggagaacgccttcttcccggacctgtcgcgggtgcggcggaccgacgtgatcttcttctgctcgcccaacaatccgacggggcacgcggcgtcgagggagcagctccggcagctggtggagctcgcgcggcggaacggctccatcatcgtcttcgactccgcctactcgtcctacatctcctcctcctcgtcgtcctccacgccgaggtccatctacgagatccccggcgcgagggaggtggcgatcgaggtgtcgtccttctccaagttcgccgggttcacgggcgtccggctggggtgggctgtggtgcccgacgagctgctctactccgacggggtccccgtggcgcgggacttcgaccgcgtggtgtgcacgtgcttcaacggcgcgtcgggcatcgcgcaggcgggcggggtggcgtgcctgtcgacggaggaaggccgcggcgcagtggcgcgggtggtcggggtgtacagggagaacgcgcgggtgctggtggagacgttcaggtcgctggggaaggaggtgcacggcggcggcgacgcgccgtacgtgtgggtgaggttcccggggcggcggtcgtgggacgtgttcgcggagatcctggagaagacgcacgtcatcaccgtgcctggcagcgggttcggccccggcggcgagggcttcatcagggtcagcgccttcaacagcagggacaaggtcctcgaagcgtgccaacgcctcaaaagcttcctcgcatga</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0195100, RefSeq:Os03g0195100