Os03g0679700

From RiceWiki
Revision as of 19:40, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0679700

Description

Similar to Thiamine biosynthesis protein thiC

Version

NM_001057432.1 GI:115454592 GeneID:4333719

Length

6944 bp

Definition

Oryza sativa Japonica Group Os03g0679700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:27712487..27719430

Sequence Coding Region

27713686..27713972,27714081..27714211,27714836..27715662,27716482..27717156

Expression

GEO Profiles:Os03g0679700

Genome Context

<gbrowseImage1> name=NC_008396:27712487..27719430 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:27712487..27719430 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgccctgcaaccctcattctcttcagcaatggctatgaaaagtctgaagttacccaaaactgcagttttacctggatttggtggtattgcacgtcctcaagatgtgcaggacaggagcgctaacttcacttgttcaaggcctagagcagcttcagtgactgaccagtcaacagcagagccagcaaaacccaggcaaaacaagcacactgttgatccttctgctccagaatttctgccactcccatcatttgaagaatgctttccaaggagcacaaaagaatccagagaaattgtgcacgaggaatctggccatgtcctcaagatcccatttaggagaatccatttgaccggagatgagaagcattttgacacatacgacaccagtggtccacaaaacattagtccaaggattggacttccaaagataaggaaggaatggattgacaggagggagaagttaggtggtcctcgatacacacaaatgtattacgctaagcagggaatcataacagaggagatgttgtactgtgccacacgtgagaaccttagtcctgaatttgtccggtcagaggttgcccgtggacgagctataattccttccaacaagaggcacctggaattggaacccatgattgttggacgaaacttccttgtaaaagtgaatgcaaacattgggaattctgctgttgtgagctccatcgaggaggaagtacacaagctccagtgggctacaatgtggggagctgatactgtcatggacctttcaacagggcgtcatatccatgagacccgggaatggatccttcgtaattcttcagtccctattgggacggtgcctatttaccaagcacttgagaaagttaatggtattgctgaaaatctaagctgggaagtctttagagatactttaatcgaacaagctgagcagggtgttgattacttcacaatccatgctggcgtgcttcttcgttacattcctcttacggcaaagagaatgaccggcatagtttcacgtggtggctctatccatgcaaaatggtgcctaacatatcataaggagaactttgcctatgagcactgggatgaaattcttgatatttgcaatcagtatgatgtggcattatccattggcgatggtttgagaccaggttctatttatgatgcaaatgatagtgctcagtttgcagaattgctgactcaaggggaactcacacgccgagcttgggcaaaagatgtgcaggtaatgaatgaaggcccagggcacattccgatgcataaaattcctgaaaacatggagaagcaactggagtggtgcaatgaagcacctttctacacactggggccactgacaactgatattgcacctggttatgatcacatcacctccgccattggtgctgccaacattggggctcttggcactgcacttctctgttatgtaacaccaaaggagcaccttggattgcctaaccgtgatgatgttaagacaggcgtgatatcctacaaaatttctgctcatgctgctgatttggcaaagggccatccctatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctatctctggatcctgtgaccgctatgtctttccatgatgaaacattaccatcggagggtgccaaagtggcacatttctgctcaatgtgtggcccaaagttttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacgggacagtggaggaagcggtgatacaaggaatgaatgctatgagtgctgagttttcagctgcaaggaaaacaatcagtggggagcaacatggtgaagctggaggggagatatatgttccagaaagctatacagctcgcaaataa</cdnaseq>

Protein Sequence

<aaseq>MAALQPSFSSAMAMKSLKLPKTAVLPGFGGIARPQDVQDRSANF TCSRPRAASVTDQSTAEPAKPRQNKHTVDPSAPEFLPLPSFEECFPRSTKESREIVHE ESGHVLKIPFRRIHLTGDEKHFDTYDTSGPQNISPRIGLPKIRKEWIDRREKLGGPRY TQMYYAKQGIITEEMLYCATRENLSPEFVRSEVARGRAIIPSNKRHLELEPMIVGRNF LVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTVMDLSTGRHIHETREWILRNSSVP IGTVPIYQALEKVNGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRM TGIVSRGGSIHAKWCLTYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND SAQFAELLTQGELTRRAWAKDVQVMNEGPGHIPMHKIPENMEKQLEWCNEAPFYTLGP LTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKISAH AADLAKGHPYAQAWDDTLSKARFEFRWLDQFALSLDPVTAMSFHDETLPSEGAKVAHF CSMCGPKFCSMKITEDIRKYADEHGYGTVEEAVIQGMNAMSAEFSAARKTISGEQHGE AGGEIYVPESYTARK</aaseq>

Gene Sequence

<dnaseqindica>1200..1486#1595..1725#2350..3176#3996..4670#gctcacgagttcctcacttcctcctccgcccgcgtcgcccctcctctcctctccctcccggctcccggctaccgccgccgccgccccgaggtgagagaacctttccttccgctctccggcattcgtttcgatcagaacgaacgggggatttgcctcgtcggaatccgtgggggatctcgcgcggccgacgggccggggttgcggttttggatgctgcttctagcggtagcatcgtaggtttctggatgcgttgtggattaggggggtaaggattttggctggtctcgctttgcttgcctgcgtctttgcgggtgtgatttccgtatgatacggttgatgcttgatagatcgtgcgcgcgtggtgaaggcctctgttgctaccgtggttatctagttctcgatcgtattggtacatggggggcctctttgattctggacgctagtttttccacatgggtatatgctctatgctcttgttcggtgcagtgcacacgggagaggggagacacaagttccacaactcctttgtaaggcatgtttcatctgagatgtagagtagtatagaaggaagtgtatttttgtccctcaaggggacatcccatcgttttgtgcatagcgttcaaaaagttatcaaaaaatttgaaaagaaattgtcaagatagatcattatacgatatatctttttcaaacatgcaagttaaaattcgacttatacaatttgaaacaaaaataacaaatttaaccgtgaattacacgttctattcatagttaaatttgttatttttgtttttacttatataagttgaatttgaatatgcatgtttgtgaagttacatatcacatattgatctatcttactaaattattttaaattttttgatgactttttaagtgacatgcaaaaatgaggggatatccccttaagggatgaatagagttctccagtatagaattgaaatatgaatcattttttcaatcaaaaccagttcatcaggcatcatgaatgaactctgaatattaaaggcatcagagctagaggggttatttcgactgctacatgcatttgtcgtcatcttcagatagcctacatggagataagattaggactgtagttttctgcaagtgcagatataaagcttttgagttgatagcgttgcactgtctttaatcattaatttttctctacctttggacaggaaatggctgccctgcaaccctcattctcttcagcaatggctatgaaaagtctgaagttacccaaaactgcagttttacctggatttggtggtattgcacgtcctcaagatgtgcaggacaggagcgctaacttcacttgttcaaggcctagagcagcttcagtgactgaccagtcaacagcagagccagcaaaacccaggcaaaacaagcacactgttgatccttctgctccagaatttctgccactcccatcatttgaagaatgctttccaaggagcacaaaagaatccaggcaagatttacatttcacttttcattaagaactgtattggaattacttacattccggtatgttaacgcctccactaaagcttatgttgcctgtgactatgttcttcagagaaattgtgcacgaggaatctggccatgtcctcaagatcccatttaggagaatccatttgaccggagatgagaagcattttgacacatacgacaccagtggtccacaaaacattagtccaaggattggtaactcactgacctcatttctcttgtcaaactaaacccccaaaccaagctaatgaacataacatcttacatttttttatcaatcctgcatgaaaggaaagatcagcggcttagtggaaattatttcttgttcttttatgttcactctaatgcaattatgataccttatattgttttgaactctttttgttatttttatttacaaattttattttttttatatttctgtactatttgcggagttttatttttcatttataccaatttatttcaaaactaatagaaataatttccatagggaacatggacgtatgatattaggtatcgtgcagtttgatacatgaatgtaattgcatagttaatttgatagtaccaaaacggccagtaaaaagagatgacaccagaacaactgaactaatactgttaaaccaaaatggtatacaaaccagtgttgacatcatgcagtgcctaggctaccttttctcacattttcgctacataagtaactatgtccagtcctctccatattcaaataactatactgataggatggttgagggttcttccctctctttccccctaacatatttgacaatttgcataagcatttgaatttttttgcaggacttccaaagataaggaaggaatggattgacaggagggagaagttaggtggtcctcgatacacacaaatgtattacgctaagcagggaatcataacagaggagatgttgtactgtgccacacgtgagaaccttagtcctgaatttgtccggtcagaggttgcccgtggacgagctataattccttccaacaagaggcacctggaattggaacccatgattgttggacgaaacttccttgtaaaagtgaatgcaaacattgggaattctgctgttgtgagctccatcgaggaggaagtacacaagctccagtgggctacaatgtggggagctgatactgtcatggacctttcaacagggcgtcatatccatgagacccgggaatggatccttcgtaattcttcagtccctattgggacggtgcctatttaccaagcacttgagaaagttaatggtattgctgaaaatctaagctgggaagtctttagagatactttaatcgaacaagctgagcagggtgttgattacttcacaatccatgctggcgtgcttcttcgttacattcctcttacggcaaagagaatgaccggcatagtttcacgtggtggctctatccatgcaaaatggtgcctaacatatcataaggagaactttgcctatgagcactgggatgaaattcttgatatttgcaatcagtatgatgtggcattatccattggcgatggtttgagaccaggttctatttatgatgcaaatgatagtgctcagtttgcagaattgctgactcaaggggaactcacacgccgagcttgggcaaaagatgtgcaggtgagaacaatgtgatcaattaaattacaaactttatgcatttcatatcctcgacacattgtaatatactccgccatagtttaatgttccaatttttcgtatatgaaactgagaacatgtattgtgaataaacttatacagttgacttattggtctctgattttgtctgttgacaagaatatagaacatccttgaaataagtatcgcctgctatctatactgaaactatagatgcaaatcctatactcgatatgcatatggttctactaaaaaaatgcatgaaataaacgatggcctgtagagtatagggtctctagaactggtcagaaagtagaagatatttgcaaagatcagcgcttaaaacttattcttgttcaaaatgttagtttggtgtaaatagactacaaatgaataaatagtagaaatgagctgattgctaaatctgcaggcattaataatgtcacttattttggaagtattgtattatacaactacatgttcaattaatgcaatatagtcttccttaatcattaagcttttgcagaaagtatctgtagaaatttacttctcttcttgcttgttacactctttgtgaactcatacagataaacatatgagaagatgttagagatgtggttttaaaactctttattgtaaatgacatgctctaaatgatgaatcgtttttgtttccctaataatttggtagtagaaactttgaacggtgatgtgcctgaatgatgatttgtttccattagctacacaattcaattttttttaaccttgtcaagcagtgtttttgacatttctcaatttttaggtaatgaatgaaggcccagggcacattccgatgcataaaattcctgaaaacatggagaagcaactggagtggtgcaatgaagcacctttctacacactggggccactgacaactgatattgcacctggttatgatcacatcacctccgccattggtgctgccaacattggggctcttggcactgcacttctctgttatgtaacaccaaaggagcaccttggattgcctaaccgtgatgatgttaagacaggcgtgatatcctacaaaatttctgctcatgctgctgatttggcaaagggccatccctatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctatctctggatcctgtgaccgctatgtctttccatgatgaaacattaccatcggagggtgccaaagtggcacatttctgctcaatgtgtggcccaaagttttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacgggacagtggaggaagcggtgatacaaggaatgaatgctatgagtgctgagttttcagctgcaaggaaaacaatcagtggggagcaacatggtgaagctggaggggagatatatgttccagaaagctatacagctcgcaaataaggttggtctttttcttatcatgtatagttcaccttgtgggagatgtttggactcttttgttctgaatatgtagggtttttaactcagtatgaagcaattagtcatctggagtaaaatggtctagtgccgtatttcaatcagttttacataaataagccattaatgtgagcttaccgtcttgaaacagcttttcagatgccttctctagcacttttgttgacccagtaacttcatacatgctactagttatatagcattagtgcttgttacaaatatttctgaattatcttgactaaataaatactactcgagtactatctaccattcagtaaacattctgctaatccttttactccctccatcccgaaaaaaatgaatctaggactggatgtgacacatttagtacaacgaatctggacagaggtatgtctagattcatagtactaggatgtgtcacaccagtactaggttggttttttatgggacggagggagtacatcagaaatttttcataaatctatgagaactgttgtaattttgactccacacactatcttcagttatatttcttaagggaaaattactctcacagcaatcctttgaaatgggtttgcatgtacatttgaaatttgacactaactgtaatagcactggatagctgctctgtttttatcaacttctacttgtaatttcagggaccttaataaacctttagtggcttggacttgtatgtgcattactgcaaaggcactaacttttatatcacaataacatgttctcgccttctcggaactcagaatacaatctccgtgcagatcgtcttggtgtccatctactccgggtggagcgtttatcagcagcactcctcaccatcctatgttaggaggtggtaagcagtataagtgccttgaataaagctggtgttgcttagctcaatttgttaattctgtcgtggcttgtaataaaattaaactctatatgtgatccttccgtgtcatattttctactctttgcatcactgtgggttgttagtaatgaaagttgcaccaggggtgcctgtattctcaacgatctgaaggcctcttggcctggattgttgtgaattgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatttctacttttatgtttccagggaactctcaacacaacccctttttggtgggagatcgagctatccaatatgttcctgaacgtgtgagctcagcagctggatatacctgtttcttacaactgaggtaacatggtaataatacttcatttgataagtggcatgctgacatttctccaacaggagaggatttctgcagataccacttcgtaatgtcccagaactgatttagtcatacatttattatccgtgtaaatttgcaaagcgttggccatgtcctatgcaattgattttaaaccatctatctgcacatatctaattaaagtataaaacaatttataaactctacataatggacattttagctgcatgccacttgtcaattgagcacacaatatactgactaaattcaatttaacttgatcatgattcatgtggaaggtgtttattaggaattaatttattgatatggccagagacttgtttatttttagctatttatttgtctttcccatagaaatgatcaaattttgtacttgcaccttgtgtaagtataatagaattatttagtctgttttggagcattcattaatgcaatgatgctcagccgctcagatctttgcgtagcattatccaagaaaacaagtctttttgtatcccctagataatttgaaagcacccatacatgcacaatagcatgtgaaaaagaactttagctaggttctgttgaccgattatgttgtaggataggaatcatctgcctgtagaacataatttgggcattatcttctgatgttataatcatgtttttctcagcaaactattactccgcactccattttgtgtttgcgatgtggaattattttacctgtgatccaatcccattatttgactgacgtgaaacgttaagtgaaatgacgtgtggacaaagttgctcgtggctggagtctttatgctcgtggttaacaatttggagatgaattttgctctgattgtgctcctgcaatgtgtttttaattttcatcataacggatcttgacactattttctatcagattgttacctgttgttcattccgagttcagtactactatacaatgtccgatcaagttcag</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0679700, RefSeq:Os03g0679700