Os03g0684400

From RiceWiki
Revision as of 19:40, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0684400

Description

Mg2+ transporter protein, CorA-like family protein

Version

NM_001057454.1 GI:115454636 GeneID:4333741

Length

6504 bp

Definition

Oryza sativa Japonica Group Os03g0684400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:28048282..28054785

Sequence Coding Region

28048449..28048886,28049634..28049706,28049908..28049978,28050514..28050599,28050700..28050790
,28051239..28051307,28052039..28052119,28052196..28052361,28052550..28052595
,28052673..28052753,28054023..28054105,28054222..28054265,28054362..28054457

Expression

GEO Profiles:Os03g0684400

Genome Context

<gbrowseImage1> name=NC_008396:28048282..28054785 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:28048282..28054785 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtccgtttcgtcgtccccgtcgtactcgtcgcaggccgccgtcctcctcctcctccaccagccgccgcaccagcacgggcacggcggcgcgtgcctccggtaccgcggctcgcagtcgcaggggagggggaatgccgtagctacgtcgctggggctctccgcggcagggcggggcggagcggggggcctcctcctgctgccgccgctgcccgcgctgcgggcggcggaggggaaggatgggcgggccgtgaccaaggatgaggaggaggaggcggcggcggcggcggtggaggaggagggggaggtggaggtgaggagggaggaggacaagccaggggacgatgggtcaagggaggccgcagcgaggggatcggggtcggggcgattctccgccgactacatctcgctcggcatcagggagcccgtctacgaggtgatagaagtaaaatctaatgggaggatgtctaccaaaaaaataagccggaggcagctattgaaatcaagtggcctccgcctacgagataccagaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggtccgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgcgttcttatattcaattacaacagcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatcaatggtggaccagcaatgccatttcaacttgaggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgtatcgagcctcgtgtgggtgctttgcttgaagttctaccaaatcggttgacagctgatgtgttggagcagcttcgtctaagcaaacaagcattggttgagctgggttcacgagcaggtgatctcaaacaaatgcttattgatctcctagatgatcctcatgaaatccgtcgaatatgcataatgggaagaaattgcacgctcgacaaattaagtgataacatggagtgctccgttcctttagagaagcagattgctgaagaagaagaggaagaaattgaaatgttgttggaaaattatcttcaaagatgtgaatcaatccatggtcaagcagagagacttcttgattctgcaagagaaatggaagattcaattgcggtcaacttaagctcccggagacttgaagtaagcagagttgagttgcttcttcaggttggaacattctgcgtcgccataggagcattaattgcaggaatatttggcatgaaccttaaatcgtacctcgagacaaacgcgtgggcattttgggcgacaactggtggaatagtagttggagcagtggctggatttttcatcatgtactcatacctaaagactagaaagatattgtaa</cdnaseq>

Protein Sequence

<aaseq>MASVSSSPSYSSQAAVLLLLHQPPHQHGHGGACLRYRGSQSQGR GNAVATSLGLSAAGRGGAGGLLLLPPLPALRAAEGKDGRAVTKDEEEEAAAAAVEEEG EVEVRREEDKPGDDGSREAAARGSGSGRFSADYISLGIREPVYEVIEVKSNGRMSTKK ISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPSLLVREQAILVNLGSLRAIAMHERVLI FNYNSPGGKAFLDSLLPRLNPRNINGGPAMPFQLEVVEAALLSRIQRLERRLMRIEPR VGALLEVLPNRLTADVLEQLRLSKQALVELGSRAGDLKQMLIDLLDDPHEIRRICIMG RNCTLDKLSDNMECSVPLEKQIAEEEEEEIEMLLENYLQRCESIHGQAERLLDSAREM EDSIAVNLSSRRLEVSRVELLLQVGTFCVAIGALIAGIFGMNLKSYLETNAWAFWATT GGIVVGAVAGFFIMYSYLKTRKIL</aaseq>

Gene Sequence

<dnaseqindica>168..605#1353..1425#1627..1697#2233..2318#2419..2509#2958..3026#3758..3838#3915..4080#4269..4314#4392..4472#5742..5824#5941..5984#6081..6176#aacttcgaggcgagaagcgcgagatcccaaaaaaaaaaaaagaaaaaatagaaaaaaaaaacaagcgaggaacaggagaagcgccgcggcagctagctgccacgtggacctcgccgccggcgtcgccgccgccgccgcgcgtggatgcccccgcggagcccgcgcccatggcgtccgtttcgtcgtccccgtcgtactcgtcgcaggccgccgtcctcctcctcctccaccagccgccgcaccagcacgggcacggcggcgcgtgcctccggtaccgcggctcgcagtcgcaggggagggggaatgccgtagctacgtcgctggggctctccgcggcagggcggggcggagcggggggcctcctcctgctgccgccgctgcccgcgctgcgggcggcggaggggaaggatgggcgggccgtgaccaaggatgaggaggaggaggcggcggcggcggcggtggaggaggagggggaggtggaggtgaggagggaggaggacaagccaggggacgatgggtcaagggaggccgcagcgaggggatcggggtcggggcgattctccgccgactacatctcgctcggcatcagggagcccgtctacgaggtaaccgatcggcgatcgaacgccttgtaatggttaatggtaaattggagacagcaagggactcattcttatgatcatataagtcaaaatttaaattttagaacttaattttgaatttgattttttttcattgtagattattcgccgcatttgtttttttagtcactaaggatacgtatataaaagctttactcacaaatgattttttatttgctaataagcgattcggataaggttgcaaggtcgtgcatcagctaacttctgttcctagtcagaattatggattgcaatagctcatgttctcaaggtcttaagtccactcaacaagccaaatggaaatattgcaatatgatcattgtgagtgtccaaacgtaaataaacaatacattatatgccgttaatccaaacgtgtaactttggatggagggctaccagtaggcttcatgcataataaatctttctctaggttcagattttgctctctctttttttcaagtcatggggagttatgtccctcgttgagatcattttctttgcaaactcaaatggccgtgtgcatcctagatgcagaggctggggatgtaatcatctcccttatctaaaataaatctgcaattgtcatgctaatttgatgcatgtttctgtaagggtaggtttgctttggaatgaaatgcctgttacatattctgggacttctgcaaattgcaagatgcaaattaactttcccggatatcaaattttactcaggtgatagaagtaaaatctaatgggaggatgtctaccaaaaaaataagccggaggcagctattgaaatcaagtggtaggtagaaagaatatgtttctcaaggactgtaaaaaacatgattatgtagtctgtaccaaactctcatatagtgcttgataatttactggtaacagttttagaatttgaaaatgctgccatttcttgtggttttgttcattcttgtgaatgtcaagctcattgacagtatttatgttgatcaccgaccttttcttataggcctccgcctacgagataccagaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggtaataagatactttcaataattaatcatgtagactttactctgtatatgtttcccatcttttcctacaattttcagttacacaaacaatggaatgagtgatgctaataattgtgtatgtacaagagtctgaagatagtacaattgctctgttacaagtatctcaggttgcctgtcaaaattacctatgttattatagtcaatcacagagtcagagttcaattttttttattcaaagatagaagtaaagaaaaaggttttaattctgcaatattttccagctcacatttcgtttagctgtctttttcagtaacctgcattgtgattgtaatcttgacaaccactgttcattactatgaactgataacatacatagaatatttgtgtatagcttttcatgtaaacttccatatcaatatatttgaactctatgtttgcatggttactagattctagatttatgtagaagttaattttttgccttatcaacctgcttcacagttcaacatattgcttctatgtaccatttcatataggtccgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgcgttcttatattcaattacaacaggtcagtttgtacactagtcattttaatataaattgtattttacttggtgaacatcactattgttatgaaacttatcaattattttatctgacttgagtagcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatcaatggtggaccagcaatgccatttcaacttgaggtatcaggcatatggatattcttatattaatccatatttgtggtctggaacagtcttaatatgatgatattttccttgtcaattgtttcatttatatttgcctccatggaaggtttactttgttttcaactcacataggaataagattgtcatccatgagttttcctagtttctcttaacggtcgaatggaatcttgaacaagaataggattatcatctttgattttaaaagttctttttgattgtacaatatcttttttggtctcattagttattatattaaatcatttaacatatattgctgacaaaaaacatttttatcgccatcatgcatttgccaacatgtcatgctatgcttgcattttcacccgattattgagagtaccatcctcctgccaaatactgggccaagatgatctggttatttattgccttctcttatattcaggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgtatcgagcctcgtgtgagtgccagaaaagtccctgctagctctacatcttgtacaagattgtatatcctgatgttgttagttctactttctggtgcatattcaatttatggagcaatctgatatattgtcaataggtgacttaagacacttacgaattcctgttcctgtcctctattttcttgatttcaaccttgaaaacttcattcaaagcacatatatacagaactgaaccaataataatgcatgttatttccatatcctgcaccctaactctttcctttggcatttagaagtccctgactgcagatttgcacgccttcctctatatttttatacatctttaccaaatggactaattgaagcacctgatcttcacacaagtcaactgcacaaatcataagctactgtcaatacctagctttttgctgagcacttactaagtttaacactagggagtaaggatcttcttgaagtcccttgtaaatcacagacaagacatagaccagtaccatgtgtccgtgccacatgatcactgcagaattccttcttttttaaaaaaaatgggaaacagtcggaaagagccctaccaagctgaccctgcattttcatgtggtattttaggtgttgtcgtattcttgtgtttgtgtttcagtcatgtatggatcaagaacatgccagtgttcaaattgactctatttataatggaaaaaataataatttgggtatctgggcttatatctcaggtgggtgctttgcttgaagttctaccaaatcggttgacagctgatgtgttggagcagcttcgtctaagcaaacaagcattggtattaaagctgcgctttagaatcatttcctggacttgtttgtcaagtttaattttgtctctattcatgtgtcaaggttgagctgggttcacgagcaggtgatctcaaacaaatgcttattgatctcctagatgatcctcatgaaatccgtcgaatatgcataatgggaagaaattgcacgctcgacaaattaagtgataacatggagtgctccgttcctttagagaagcagattgctgaaggtatggattgagagcatcattggactttttatattttggagacatattactgccttcatggatttttttttgtttccaagcatggcatgtgcggaattcacaaggagtgttgcaatcacttatttgtcagtagttaactgtttgattctgttttacttgtttcatctgtattttttttgttttaacagaagaagaggaagaaattgaaatgttgttggaaaattatcttcaaaggtattcatctgcaatacaatcttttcagatgtcttgtttctttcttgcagaccttcattgtgtattcttactgtcagatgtgaatcaatccatggtcaagcagagagacttcttgattctgcaagagaaatggaagattcaattgcggtcaacttaaggtctgtctactctcacagaccacatgatctcacaaagtttagcttcatcaatgcatgtgttcttataatttataacaatgctcacttttgtgatttttttgctcttgaatataattggacagtaaaaatatatgtgtaaatgtatgaattttaataaaaactatattttgaatttaataaacgatctaaggtgacaaccgaacataaattactagttcaaccagacaatcaaccattgttttctactcttctctctacatttatattccaaatcatgtgcatggtccataatttgtttaacaccctgaagtcactccaacttggactaaaatggtctttgatttgcaagccctgcatctaaacagacatcgcattttatttgctgcctctaaactgtttctagcagctactatttctttgtgaacccttcatccaagcgactgagtccaactgtacttatcataaagctaggctgcgtgcatctagaagatcatgtagcatggtagcttttcagcaaaaagaaagagaaacacgttctccaatatggaaatagaatttatatccatcagataactgtaaaatgatctttcacatatttgcagtacaaccaaactacaattagcatcactacaaatggacatttcagattcttaaattttatagctatattgtggcgactagcgagaaaataccaattaagagcaaacaatacactccaagtctccaacatagatgaaattaagaaagcaaatgcaagaattacttggaaatggaggacgcaccaattatgtaccggatacgtacatagtactagtctcaaaattttgcaaatgttcttttgtgggttggggccttgggggcatgacttcattatcctccatcctttactctctgtggtgtgcgggtgtccacaggccatggcggtgtgtactttgcaacataaaatgccagcattatgtttcaggtttcaattatcaaagcataaccagataaaagaaagggggactgcttgagtgcttcaaattgcattcccataattttatttttttagaactgatttaagatgaaattatgagagtgggtcttggtataaggtggtgtgttcctgcacctctgtttgtgtagcatacaatcacaataaactatttgagaattgtgggatcttgttctttttggcggatgtgaaatttatgtgaactagctcaacatcacaaacatttcataaattatgggttttcttaattcttaccacattgggcatccttacagctcccggagacttgaagtaagcagagttgagttgcttcttcaggttggaacattctgcgtcgccataggagcattaattgcaggtacaaaaatctgtcagcgcttttgtatctagtgattttcaaatttcagttcctttctatcactctttattcttgaagtaatgctataattgaaccgttgtatttgtttcctgtaggaatatttggcatgaaccttaaatcgtacctcgagacaaacgcggtatagcattgcactcttgagttcaattctgctttctgccacgtactggcactacttgatatagcatgagttgatgacgagtttattttggagcagtgggcattttgggcgacaactggtggaatagtagttggagcagtggctggatttttcatcatgtactcatacctaaagactagaaagatattgtaaaactctgtagcattcggtactcctaggaatgtaaataattcggttttgatctcattttgaaagctattgatggaggcacgtacagattcatatgagattgctttgatgctcccacgaatgctgtcgtgggcgtcggttctgaactttggaccaagcgttcgctgcacgcctgatgaagctagcagcctagcaccaagaccatagtatttcgcatctcttacataaagccgtggcggttttcatgactgcactgggtgagagtgctgaacagtgtaactctagattgatcaatgttactgattatctttgaaaatatttgcctggatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0684400, RefSeq:Os03g0684400