Os03g0731900

From RiceWiki
Revision as of 19:42, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0731900

Description

Similar to Isopentenyl/dimethylallyl diphosphate synthase (Fragment)

Version

NM_001057702.1 GI:115455132 GeneID:4334003

Length

3236 bp

Definition

Oryza sativa Japonica Group Os03g0731900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:30713827..30717062

Sequence Coding Region

30714201..30714266,30714388..30714474,30714660..30714845,30715011..30715105,30715225..30715330
,30715424..30715498,30715594..30715725,30715828..30716007,30716417..30716613
,30716697..30716952

Expression

GEO Profiles:Os03g0731900

Genome Context

<gbrowseImage1> name=NC_008396:30713827..30717062 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:30713827..30717062 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaccatcaccacgcagctccggtcggccctcctctcgccggcggcctcgccgagccgccgtgccaggcgcgccccgtcgtccgtgcggtgcgactcctcggcagcgtcgtccctgtccgcctccgcgtcgctcgacgccgacttcgacaagaagcagttccgccacaacctcacccgcagcgacaactacaaccgcaagggcttcggccacaagaaggagacgctcgagctcatgagccaggagtacaccagcgacgtgatcaagacgctcaaggagaacgggaaccagcacacgtggggccccgtgacggtgaagctggcggaggcgtacggcttctgctggggcgtcgagcgcgccgtgcagatcgcctacgaggcgcgcaagcagttccccgacgatcgcatctggctcaccaacgagatcatccacaaccccaccgtcaacaagcgattggaggacatgggcgtccaaaacattcctgttgatgcaggtattaaggatttcgatgttgtcgagcaaggggatgttgtcgtattgcctgcatttggagcggccgtggaggagatgtacacgctgaatgagaagaaggtgcagatagtcgatacaacgtgcccttgggtttcaaaggtgtggaacatggttgaaaagcacaagaagggtgactacacttctattattcatggaaaatactcccatgaagaaactgttgccactgcttcctttgcagggacatacatcattgttaagaacatagcagaggctagctatgtatgtgattatatacttggtggccaacttgatggttctagctccacaaaagaggagttccttgagaaattcaaaaatgctgtttctccaggatttgatcctgatgttgacttagtgaaagttggcattgccaatcaaacaacaatgcttaaaggagaaactgaagaaattgggaagcttgttgagaagacaatgatgcgtaggtttggagttgagaatgtcaatgaccacttcattgccttcaacactatctgtgatgccacacaggaaagacaagatgcaatgtaccagctagtgaaggagaaagttgatcttattctggttgttggaggatggaactccagtaacacctctcatttgcaagaaattggagaactcagtggaattccgtcttactggattgacagtgaacaaaggattggacctggaaacaagatcagctacaagttaaatcatggcgagcttgtcgagaaagagaactggttaccagaaggccctatcacaatcggagttacttctggcgcctcaactccggacaaggttgttgaggatgcgttacagaaggtgtttgagatcaagcgccaggaagttttgcaggccgcgtaa</cdnaseq>

Protein Sequence

<aaseq>MATITTQLRSALLSPAASPSRRARRAPSSVRCDSSAASSLSASA SLDADFDKKQFRHNLTRSDNYNRKGFGHKKETLELMSQEYTSDVIKTLKENGNQHTWG PVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWLTNEIIHNPTVNKRLEDMGVQN IPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKVQIVDTTCPWVSKVWNMVEK HKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYVCDYILGGQLDGSSSTKE EFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRRFGVENVND HFIAFNTICDATQERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQEIGELSGIPSYWI DSEQRIGPGNKISYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALQKVFEI KRQEVLQAA</aaseq>

Gene Sequence

<dnaseqindica>2797..2862#2589..2675#2218..2403#1958..2052#1733..1838#1565..1639#1338..1469#1056..1235#450..646#111..366#ggggagatcccaactccgaatccgacgcacccacacccatccactccagagctccccgcggcacttggcaccaccaccaccaccaccggcatccggcggcgcgggcggtgatggcgaccatcaccacgcagctccggtcggccctcctctcgccggcggcctcgccgagccgccgtgccaggcgcgccccgtcgtccgtgcggtgcgactcctcggcagcgtcgtccctgtccgcctccgcgtcgctcgacgccgacttcgacaagaagcagttccgccacaacctcacccgcagcgacaactacaaccgcaagggcttcggccacaagaaggagacgctcgagctcatgagccaggagtacaccagtatgatttcctctcctttccctttctttttttttctcttcttgattgggggctcaccggcggcggcgtgttcttggtctcaggcgacgtgatcaagacgctcaaggagaacgggaaccagcacacgtggggccccgtgacggtgaagctggcggaggcgtacggcttctgctggggcgtcgagcgcgccgtgcagatcgcctacgaggcgcgcaagcagttccccgacgatcgcatctggctcaccaacgagatcatccacaaccccaccgtcaacaaggtgattatgaaatcctcccctatccatttcgtttgattcaggcgtcgactcgtctccatggggatgaattttgtggtttttccccttcgtgaatgcccgcctccttccacgaactgagtttgttgcgtatgaggggatagattagcgtctgcgtgtgcgtggtaaaatgatctatttggtgcaaatgagatttggagtaaaatcctaccaatttctagttgagaaagtgttcacagcgaagagtggccaccagattctgcgttttagacttttatacccccttgattacccaattaactagtttctttttatctgctgcttaagagtattcaatcatctgtgcttcgcatgacaacggactctggaattggaagtgacttgaattcgactcctgctattgtgtttgcagcgattggaggacatgggcgtccaaaacattcctgttgatgcaggtattaaggatttcgatgttgtcgagcaaggggatgttgtcgtattgcctgcatttggagcggccgtggaggagatgtacacgctgaatgagaagaaggtgcagatagtcgatacaacgtgcccttgggtttcaaaggtgggtttcccttttgaagatcacctgatcctttctatgtcgctctgagattatcagaaatcaaaggtatatctggttgatgaactccactactatatataggtgtggaacatggttgaaaagcacaagaagggtgactacacttctattattcatggaaaatactcccatgaagaaactgttgccactgcttcctttgcagggacatacatcattgttaagaacatagcagaggtatgtttgatgcatttaattttttcctattgcattgacttccatgttgaatacattatttggctcaaataacaaaatattatcaattgtaacaggctagctatgtatgtgattatatacttggtggccaacttgatggttctagctccacaaaagaggagttccttgaggtaaagcctttcttgaatcatctttttttttttgccctgttatgttggaaagaaatgccaatgtctaatcgaatgttttatcaacaactgcagaaattcaaaaatgctgtttctccaggatttgatcctgatgttgacttagtgaaagttggcattgccaatcaaacaacaatgcttaaaggagaaactgaagaaattggttcgtatgctagcagatgctaattgccattagcttcatgcctgttagtttgtgttattatatacagtacaatttggttttaaatatcaaatttgactataatgctgtataactaacagggaagcttgttgagaagacaatgatgcgtaggtttggagttgagaatgtcaatgaccacttcattgccttcaacactatctgtgatgccacacaggtaaactttgttgtactattaagtcatttatggctccattgtaatctgcataagtaaccttgttcgagcatattcctacaaactttgtggtgtttttggatacaatcagatcatagtctatgtttggttcatatattggtgacacccttccccttcatatatcaggaaagacaagatgcaatgtaccagctagtgaaggagaaagttgatcttattctggttgttggaggatggaactccagtaacacctctcatttgcaagaaattggagaactcagtggaattccgtcttactggattgacagtgaacaaaggattggacctggaaacaagatcagctacaagttaaatgtatgttgtaatactcatatctcatcaagaatattcttttttcttcaaaaaaaaatgttagtgaatattatgaaagaatagtgtagatttttttttggcaaccaataagcagaattctgacaaaataagcagaaacatcaattgaaagtatagtcttatcactgaaatctgaatcattttaacagcatggcgagcttgtcgagaaagagaactggttaccagaaggccctatcacaatcggagttacttctggcgcctcaactccggacaaggtaatacggctaacctggattatgtttttcttttgtacgcagcctgcttgtcttctgcacatatttctgcacagtggtcactggataaaactaaaaacgcataactttccttcttatgcaggttgttgaggatgcgttacagaaggtgtttgagatcaagcgccaggaagttttgcaggccgcgtaaattttcatcaggtttggtcacggtagctgatggcttggtgaaggttaatagaaccagtgcacaagcgatgtctgtacagtagtgaagaatgctacgcttttaggagcgcatactacggcatgtgctgagatttacgtagtatgttgggggcaaatgttgtaatcaattatcacacgaagaacagttgctgtatcggctgtcataactttctgaccccctcaaataacgttgcagaagtatctttcttcggtataaatatcacccaatttgttagctagtactatttgatagagctcaaatgcaggactccctgtatatatatggcaagtacaagaaatgcagggttccctatgtataacattaagttcagaacc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0731900, RefSeq:Os03g0731900