Os02g0219400

From RiceWiki
Revision as of 19:11, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0219400

Description

Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica

Version

NM_001052847.1 GI:115445064 GeneID:4328747

Length

4043 bp

Definition

Oryza sativa Japonica Group Os02g0219400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:6697862..6701904

Sequence Coding Region

6698079..6698216,6698286..6698465,6698548..6698629,6699217..6699305,6699403..6699480
,6700402..6700459,6700627..6700856,6701074..6701218,6701317..6701358
,6701581..6701753

Expression

GEO Profiles:Os02g0219400

Genome Context

<gbrowseImage1> name=NC_008395:6697862..6701904 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:6697862..6701904 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtccggccgcggcgggatccccgggccctctcgcgccctcctcgtcctcctcctcccggcgttgctgatgctcctggccttctccacctcctcctccgcggcggcgtcgtcgccgggcgcgatgcacaacaacaactgggccgtgctcgtctgcacctcacgcttctggtttaattatcgacatatggcaaatactctgtctctgtacaggacagttaagagattaggaatacccgacgagcggatcatacttatgttggcggatgatatggcttgtaaccctaggaataactatcctgcccaagtgttcaataatgagaaccaccagcttaatctatatggtgacaacgttgaggttgattaccgaggttatgaggtgacagttgaaaactttttgagagttttgactggaagacatgaaagtgctgtaccaagatcaaagcgtcttttaagtgatgaaggaagccatattctcttgtatatgacaggacatggtggggatgagtttttgaagttccaagattctgaagaacttcagagccatgatttagcagatgcagtaaagcaaatgaaggagaagcatagatttaaagagttgttgataatggtagatacatgccaagctgccactctcttttcacagcttcaatcacctggtgttttaacgattggtagcagcatgaagggtgaaaactcttattctcatcatcttgattcagacattggtgtttctgttgtggataggtttaccttttatacacttgctttctttgagaaactcaacatgtatagcaatgcctcattgaacagtcttttcaactcctataatccttctatgctgttgtcgactgcgtattatcggatggatctttatgaacggccattaaatgaggtccctgtgacaaatttctttggatcagtcatgaatactatccacacagattctgcctactcaggcttcttagctgcagatgatattggaaccatcccatccactggagataatctactgaaccatgctgtgttacagaataaggctagccaaagaagatcaaacattgaagaagtgaaagaagcacaagtaaggtcccatgggtggacagatgttctgctggaacagcttgatgtcaagaatgctgacactattgtcatgtatggtctgggaacaatgggtatactgttagcaatttcaacctggttatcaatgtag</cdnaseq>

Protein Sequence

<aaseq>MASGRGGIPGPSRALLVLLLPALLMLLAFSTSSSAAASSPGAMH NNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPA QVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLLSDEGSHIL LYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQ SPGVLTIGSSMKGENSYSHHLDSDIGVSVVDRFTFYTLAFFEKLNMYSNASLNSLFNS YNPSMLLSTAYYRMDLYERPLNEVPVTNFFGSVMNTIHTDSAYSGFLAADDIGTIPST GDNLLNHAVLQNKASQRRSNIEEVKEAQVRSHGWTDVLLEQLDVKNADTIVMYGLGTM GILLAISTWLSM</aaseq>

Gene Sequence

<dnaseqindica>3689..3826#3440..3619#3276..3357#2600..2688#2425..2502#1446..1503#1049..1278#687..831#547..588#152..324#ggcgaccagccccggctgcccttcaccctgcgccgccccagtccaccgccgcgttcgccggagcgacgatctcgcgccgccgcctcctcctcctcccctagattcctgacccggccacgccggcggcgctccccctccgccggaggctggcatggcgtccggccgcggcgggatccccgggccctctcgcgccctcctcgtcctcctcctcccggcgttgctgatgctcctggccttctccacctcctcctccgcggcggcgtcgtcgccgggcgcgatgcacaacaacaactgggccgtgctcgtctgcacctcacgcttctggtgagacctcatccccccgcaccgttgtttacttcgtctggccgagagatccagtttggaagcatgcttgtttagttcgcctattaagcgattcgtatttgctaggggtttgtttcaacttccagatgcggattacttcgcgcatttgatattctaacctgttctccagatgctgattacttcgcgcatttgatatctaaccaattttgtaatgttctccaggtttaattatcgacatatggcaaatactctgtctctgtacaggtagcttgattaattatgctcatgcatctgttattccctgtagtatctatagattatagattattccttactagcaaaacattgtttgtttcctccaggacagttaagagattaggaatacccgacgagcggatcatacttatgttggcggatgatatggcttgtaaccctaggaataactatcctgcccaagtgttcaataatgagaaccaccagcttaatctatatggtgacaacgttgaggtgagttccttactctgaaaatatgactcctgaaatatctgaatcctaaacatcacaatgaacaatttacatggtaaaatggccacttttggtgtatctagtcaatgcaatttgttggtaacactttataatgttcattcatgattaccaccttatggttatgttaagaataacatctgatttaatgctagttttacctttggccacctaatggcaggttgattaccgaggttatgaggtgacagttgaaaactttttgagagttttgactggaagacatgaaagtgctgtaccaagatcaaagcgtcttttaagtgatgaaggaagccatattctcttgtatatgacaggacatggtggggatgagtttttgaagttccaagattctgaagaacttcagagccatgatttagcagatgcagtaaagcaaatgaaggagaagcataggtaggatttgtttaccttatgcttttttgtaatatttttctttactcgtatacacagaatcttcttcttcttcttcttttttgccaaaaaaattggcctttgttttgctcctcttcatttcatacttcagtttttcaaactgtctttttctctgacctgcacttcagatttaaagagttgttgataatggtagatacatgccaagctgccactctcttttcacaggtttgtctcagtgtcttggtcattatttcccataacattttacttcaagcacctttacttacaacataagggtttcttttttgtaacttgagataatatttggttgcaccttcattatgtgcctgttcatttgaaagtttactgtcaagtcaataattcatactataaaatttattagctgcttatgtgaaattttctacattatgttttattgcttaagaactacttccactgttcacaaacaaatgtaatttaggtatcgaaatggtctcccagatgcaaatttgactcttagttttccattatgaaataatagtagaagccattaaaattataatataacgaaagtacttttctacatgcatcattcacctatttaattaaatatttaagaaggtattaatactcaagagtattaaaactttgactggatgcatgcccaatacaacaagtacttgtttccggagggagcattagacaataaaaaattccaaagactccatgctgtatttgtgcagagcagttggacgaatgtggactttccagtttccacttactacattttgatacactaatttatcaattgatagtgtttcacatcattttttagaacactaggggaatgctccactggaatatattacaaagtaatagaaataatatggcaagaaaggtttcctagaaacccatacactgtcttacagaaataaaaaaaaaaggtaaagtgaccatctagcaagtattctgtaggtaacagaccaaaactattttccaagcagatatataaataagtaaaagcactaagacctgatatagacaattttgtatgatcaatttagttatttcctttatcatggtcaacatttttctgcatatgaaaactatatctacagctgtacttgacatattaaatatctgcagcttcaatcacctggtgttttaacgattggtagcagcatgaagggtgaaaactcttattctcatcatcttgattcagacgtgagaacatgccttccatttacaattgtctcatatattatttggaactttttttgtcttatcactgggtgatacctgatctatttatttgtggcagattggtgtttctgttgtggataggtttaccttttatacacttgctttctttgagaaactcaacatgtatagcaatgcctcattgaacaggtaaaagactttgtacactattataatggttgcaagttctttaattcctacatgtccaaatataattcattacaatgtctcgaaaattttttttcataattttatttgtagagctttcttgtatgcatataattgttatcactgtgatgtgcattaactgtgagcaatttgattattgtatctacatcacacaagatatatttagtatttactttatccaaaatgcaatttactgggatgtgcattaactacgaataacatgagtcatcttttttatggagtatatatcaatcttccaatggatttactgacctttcggaatccattgtgttttataactaagtgtgtgcaataattctaaattatattcagtcatatatttctaaaagcaccatagagtagttgtgtcttatagtattttgtaactagcccgtgtggaataatgcttaaatatgcagtcttgtattactaagactctacaagcatgtagcttggtaaccatacagagtacgaaatagtgttcatctcatacattgaaaatagtatctttgtgatacaattataaccttttcattgttatgctacagtcttttcaactcctataatccttctatgctgttgtcgactgcgtattatcggatggatctttatgaacggccattaaatgaggtaaagcataagttaaaatttgtttctaatctaatacataattttgttcacaattgttttatccttttctgtcatcgttcaggtccctgtgacaaatttctttggatcagtcatgaatactatccacacagattctgcctactcaggcttcttagctgcagatgatattggaaccatcccatccactggagataatctactgaaccatgctgtgttacagaataaggctagccaaagaagatcaaacattgaagaagtgaaagtgagttttagtaaactttgagatactgttgtttttcgaagctaatgcttagcaaattgcaacatgcaggaagcacaagtaaggtcccatgggtggacagatgttctgctggaacagcttgatgtcaagaatgctgacactattgtcatgtatggtctgggaacaatgggtatactgttagcaatttcaacctggttatcaatgtagaaacaaagaagtatgaagtgtgctgttcacacatcatcctcttctagataaatgaatcatcctaacccctggatagagatcaaaaaggaagaaactttggaggttaactctttgtatattttttctctttggtaatgtccattcagctgggacataattttgtatttagtttttgtatgccacgttcaactttttgtcaggatactcattatttgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0219400, RefSeq:Os02g0219400