Os02g0537500

From RiceWiki
Revision as of 19:16, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0537500

Description

Similar to E2F homolog

Version

NM_001053584.1 GI:115446538 GeneID:4329577

Length

5108 bp

Definition

Oryza sativa Japonica Group Os02g0537500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:20726062..20731169

Sequence Coding Region

20726720..20726856,20726975..20727041,20727335..20727569,20727647..20727723,20727818..20727883
,20727985..20728033,20728119..20728169,20728267..20728319,20728441..20728492
,20728594..20728682,20728776..20728861,20729071..20729127,20729210..20729387
,20730677..20730907

Expression

GEO Profiles:Os02g0537500

Genome Context

<gbrowseImage1> name=NC_008395:20726062..20731169 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:20726062..20731169 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggggagtgggaggccgccggcggcgcagaagaagatcctgcagtcgctgcgcccgccgctgccgttcgccgcctcgtcgaggtcgcccttcgcggcgcccaacgactaccaccgcttccccgctggtggcgcggcggcggcggcggcgtctggttcgggtggcatcggcgcgggcggtgctggcggcggcggcgatatcgaggaggggctggtcatccggacgccgcaaaaaagaaaagcaccagaagaaagtgatgttgctgagtctagcgactgtatgattactagccctggatttgctgtcagtccaatgctcactccagtctctgggaaagctgttaagacttccaagtcaaagactaagaacaacaaagctgggcctcagacacctacatcaaatgttggttcaccacttaatcccccaactcctgttggtacatgccgttatgacagttcgttagggcttctcacaaagaagttcataaatttgctgaagcaggctccggatggcattctagatttgaataatgctgcagaaacactagaggttcaaaaacggcgtatatatgatattaccaatgtacttgaaggaatagggttgattgaaaagacactcaagaacagaatccgttggaagggcttggatgattcaggagtggaattagataatggtctttcagctttgcaggcagaagttgaaaatcttagtctgaaggagcaagcattagatgagcgcataagtgatatgcgtgaaaaactaagaggtttaactgaagatgaaaacaatcaaagatggctctatgtgacagaagatgatatcaagggattaccctgctttcagaatgaaacactaattgcaataaaagctcctcatggcactacacttgaagtcccagatcctgacgaggctggtgattatctccagagaagatatagaatcgtattaagaagtacaatgggcccaatagatgtctacttagttagtcaatttgatgagaaatttgaggacttgggtgggggtgcaacaccatcagggcatgcaaatgtaccaaaacatcaacctactgaagtcttcaatacaacaaatgctggggttgggcaatgtagcaactcagttgctgtggacaataatattcagcacagccagacgattcctcaggatcctagtgcttcacatgattttggaggaatgacaaggattatcccttcagatattgatactgatgctgattactggctcatatcagaaggggatgtcagcattactgatatgtggaaaacagcaccagatgtgcagtgggatgagagcctggatacggatgtcttcctatctgaagacgttagaacgccaagttcacacaatcagcagccatctgcagtgggcgggccacagatgcaggtctcagacatgcataaaccctag</cdnaseq>

Protein Sequence

<aaseq>MAGSGRPPAAQKKILQSLRPPLPFAASSRSPFAAPNDYHRFPAG GAAAAAASGSGGIGAGGAGGGGDIEEGLVIRTPQKRKAPEESDVAESSDCMITSPGFA VSPMLTPVSGKAVKTSKSKTKNNKAGPQTPTSNVGSPLNPPTPVGTCRYDSSLGLLTK KFINLLKQAPDGILDLNNAAETLEVQKRRIYDITNVLEGIGLIEKTLKNRIRWKGLDD SGVELDNGLSALQAEVENLSLKEQALDERISDMREKLRGLTEDENNQRWLYVTEDDIK GLPCFQNETLIAIKAPHGTTLEVPDPDEAGDYLQRRYRIVLRSTMGPIDVYLVSQFDE KFEDLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVDNNIQHSQTIPQDPSA SHDFGGMTRIIPSDIDTDADYWLISEGDVSITDMWKTAPDVQWDESLDTDVFLSEDVR TPSSHNQQPSAVGGPQMQVSDMHKP</aaseq>

Gene Sequence

<dnaseqindica>4314..4450#4129..4195#3601..3835#3447..3523#3287..3352#3137..3185#3001..3051#2851..2903#2678..2729#2488..2576#2309..2394#2043..2099#1783..1960#263..493#cttccctcctctctctcttcgattcccctttccccccctcacccacccacctccacgcccccgccgccggccggccggccggaaccctagctccggcgagcccctcccaccccccggccccgggcctggctccacccgacgccgcgcccctcgatcgggtcccttgcgggggaccgcggcgtcgaggagggcgatcgcgagatcgggggaggttgctgctgctgctgggcgggtgggcggaggggagggggtgagggctgccatggcggggagtgggaggccgccggcggcgcagaagaagatcctgcagtcgctgcgcccgccgctgccgttcgccgcctcgtcgaggtcgcccttcgcggcgcccaacgactaccaccgcttccccgctggtggcgcggcggcggcggcggcgtctggttcgggtggcatcggcgcgggcggtgctggcggcggcggcgatatcgaggaggggctggtcatccggacgccggtgagcgcgcggttctcgatttactccgtttctgtttggagggcggggggttttggggcgcgggagctgacgaagctgctgtggtggtttgagctctcctggtgaggattatgggtcaaaatctgcgcgttctatctgtatgcatgtgtccgtttcagtgtagccgtcagaaccctgggtagatttgggtggaattttggtcaatttctaagcttccgctaagtcttcctagtctggtcaaagcataattgctcagtagctccaactattcttatgctaagtaaatgtcgactatgatagacacgcgacgcagatcgatatggaaagaatttgatccatgcagttgtcggagccaaggtttgaactcaaggggaagtttttatgtcaaatcataagtgttgtgaagatagtgatgactttgttgaccacatacggaatagatggaaactcgtacggcagatgctaatctagctattggaaccgtgggtagattcgggcaagaattttggtcaatctgacaatttcttggcttccctcaaagtcttccaagtttagccaagcataaatgctcagtagctccaactattcttatgttaagtgtcgactatgttagatccgtgatgtggatcgataaagaaagaattcaagccgtgcagttgttggcgtgtcaccccgtgcagggcttgaactgaaggggaagtttttatgtcagatcataaatgtttcaaagagaaataatctgtgcagcgactttgttgaccagatagggaagcaacggaaacctgtatggcagatgctaataacagaggccacttaatcttgccagaatcgcgtgtgctcccgtgactggcatgctgcagttgtgggcgctctatctcattttacaagctattttgtatacaatatccttgtgttgtgatatactactatcccacagctgacatcagatagtcaggatatactacagtagcaacaccacaggtgtttctgtttaccttcataatgtttcttaactgttggcatgattaatattccaagttgaactggatctatggagtacatcgagacagtcccactaaaccagtaaggatgggaatatggtgtttgtttgttctttatatgttgtctagcatccatggattctgttgttaggacccacattggtcatatgcttaagatgatacatttttgttctatgttctgaatttaccaatgatcgacatatccctcttgggatgtttctcattacttttagcgactataaaatacaagctattctctcttcacagcaaaaaagaaaagcaccagaagaaagtgatgttgctgagtctagcgactgtatgattactagccctggatttgctgtcagtccaatgctcactccagtctctgggaaagctgttaagacttccaagtcaaagactaagaacaacaaagctgggcctcagacacctacatcaaatgttggtatgtgtaatcttctttctagtcattttctctgtgtgttatgtcgtatgaacaattaaacatgcatattttctgtttacaggttcaccacttaatcccccaactcctgttggtacatgccgttatgacagttcgttaggtgataatgtcactctctgcctacaattgtttttttctttttcaagtcttagtctgagacattgcaatccaacttctatcatatataagtaaagtctgggaagcttatatacattttgtattttgttacaatttatcttgccttttcggcttttcatattactgtgttgttacttgttacttatatttgtccttgcaattcatgtccagggcttctcacaaagaagttcataaatttgctgaagcaggctccggatggcattctagatttgaataatgctgcagaaacactagaggtcacagactgttataaactataatactatatcatttcatctgacatctcttttctctcactttatacacaattcacattttcctattttcaggttcaaaaacggcgtatatatgatattaccaatgtacttgaaggaatagggttgattgaaaagacactcaagaacagaatccgttggaagtaagcacttttattcctttaacccttatcttcctttattgccacctgatcttatttctttaacccttaaattgtcattctaatctcacacaacatttcaggggcttggatgattcaggagtggaattagataatggtctttcagctttgcaggtatttggtcatgtacagtttaaattggcgtactatcttaagtgcaccagaatacctttattctgacaagaatgcctgtgcatatttctaagcacaaatccatatgcaaccctttctgcaggcagaagttgaaaatcttagtctgaaggagcaagcattagatgagcgcataaggttagtagctgtctgtggtttcacatggaccacaattttctatgctacagaacctaacaagaacatggcttaatcgaagagcttgtgttctatgcagtgatatgcgtgaaaaactaagaggtttaactgaagatgaaaacaatcaaaggtatttcttatttaatttcatcaatagtgtgagggagtcatcatcgtgtttactaatgtacagcatctatttcatttttacatagatggctctatgtgacagaagatgatatcaagggattaccctgctttcaggttttctattctacttacatgccataacaaggccaccttgttgtagattatcatttgattaacacatgtattataggtaacatatttttttcattctgcagaatgaaacactaattgcaataaaagctcctcatggcactacacttgaagtcccagatcctgacgaggtaggaagcagttaaaattaagggactctgtatgtgacaataaatggcatcgtgaaactggttcacagcttcttgtaatatactccctatgcaggctggtgattatctccagagaagatatagaatcgtattaagaagtacaatgggcccaatagatgtctacttagttaggtaatggtgcattcctctgttgatgttaaatacatgaattgattttcacctgatcaaaaccttaccattttatttagtcaatttgatgagaaatttgaggacttgggtgggggtgcaacaccatcagggcatgcaaatgtaccaaaacatcaacctactgaagtcttcaatacaacaaatgctggggttgggcaatgtagcaactcagttgctgtggacaataatattcagcacagccagacgattcctcaggatcctagtgcttcacatgattttggaggaatgacaaggattatcccttcagatattgatgtaagtcagatcctctttaattttgattttccttccagaatagcataatttatagttgtaaagttatagctagacattacggcatggtacatgcatctttgaacttttgctttacttctctagtgttttttagcaattcaaacatgcaaatccttcatgtgtagaaactattatatattattgtgttcataaccgctctgtcataagttgtcctttgcccgagaacctcttatgtcaaaaaagacctaaatatatcatatcatacttatggtcctttttacactattttgcagactgatgctgattactggctcatatcagaaggggatgtcagcattactgatatgtggaaaacagcacgtatcctttatgatcgttcattacacttttgtttggactattcatagttttgtttagaagtcatttgtaacttataagtagctactgttgcaacttgaagtacttaacatggaaacagcagatgtgcagtgggatgagagcctggatacggatgtcttcctatctgaagacgttagaacgccaagttcacacaatcagcagccatctgcagtgggcgggccacagatgcaggtctcagacatgcataaaccctaggatcacaggggttacagaagtgaaaagatgacatctggaattcctggagcggtgtttgtagtgaaaagtgaaagcatgacagcaaatgctcattgccaaattgtaaagagccgggtggtcttcatcagaatatctgcatcttctcgagacaccaagtccgtgcgagagatcaggatgacaccattccggattcacatctgctgtggaggctggtggcgtcaactaacttaccagcctgctgtttcagcaccctgcttcagtcgaacgggagtaaatcttgctgctgctttcgctgtgaagcctgctgcggtgctcattaaggcactgatatattttttgcattcaaaactaactagtcatcagcaaggaaacggtgggctttgctgtgctctgtcgagtattctttgaaaattctttgtacattgggaggtataagggcatgcagggctcgagttattggtttgacgggagcaatgagctgagttaatgatgtaaccgagccgtctttgtaaattgttccatgctcttcctcaaatacaatggatagactttcattttgagatatgatgcttcagtagtcatttgctagtcaccatggagtgatgtgatatctttgctactggtatgaacctcaaaatgatactcgccgttaattttt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0537500, RefSeq:Os02g0537500