Os02g0801700

From RiceWiki
Revision as of 19:24, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0801700

Description

Zinc finger, BED-type predicted domain containing protein

Version

NM_001186256.1 GI:297721644 GeneID:9268003

Length

10596 bp

Definition

Oryza sativa Japonica Group Os02g0801700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:35057108..35067703

Sequence Coding Region

35065422..35065832,35067054..35067557

Expression

GEO Profiles:Os02g0801700

Genome Context

<gbrowseImage1> name=NC_008395:35057108..35067703 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:35057108..35067703 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgaatcgaacattccatcgttcacgttaggtgatttcgaccctaactacgtgtcgaggtcattcccaactggtgagtatgatgccaccggatcggctccaacaccaccagttatggagccaccggcgggttcagaagcatccggcactatgagtgggagtgcatcgacgaacaccggctcaaagagatcaagaacttccggtgtttggcaacatttcgatgaggtggccatgacaggccctgatggaaggcaggtaacattcgcgagatgtagaatatgcaaaaataagttatctgcaaaatcatctggtggaacaggacatttgaagcggcatgccgaggcttgtgcaaagaagcaaggaatccaactacgacagcaacaactactactaaatcctgatggtacgtttcagggagatcgcttgcaaagacccccacctgtccctgcagcaggtaagaaaaaattacagtggagcagaatttggggcggttcatcttctagccatggtggtggtaccagttcatcagcagcaagtggggacgctagatcgcatggtcctgccgaagagttgtccaactatttggatagcgatgccatcaggcatgaaacgtcagacttcaacgtactcgggtggtggaatgatcataagatgtcatatcctgtgctatcaaaactagcacaggatgtgttgacggtgcccgtatcttcggtatcctccgaatcagccttcagtctatgcggaagaattatcgaggataggagaacaagtctgagcagcgatcatgtggaaatactattaagcgtcaaagactgggaacttgctgcagaacatacccaatacactgctgacaaccaagaattggccgcacagttcgaaaacctttatttagatgacgaacaattagggtag</cdnaseq>

Protein Sequence

<aaseq>MDESNIPSFTLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPA GSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMTGPDGRQVTFARCRICKNKLSAK SSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDGTFQGDRLQRPPPVPAAGKKKLQWS RIWGGSSSSHGGGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHK MSYPVLSKLAQDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELA AEHTQYTADNQELAAQFENLYLDDEQLG</aaseq>

Gene Sequence

<dnaseqindica>8315..8725#9947..10450#gttggcagatttgcagtgtttcggttttttattgtttcgggggtctaaatgatgttttctgtgaaagtgtataactaggaattgtagaaaattcatagatctatcttctgaccaaagggcgtgattttatcttaagtggtttagtctatatgaatttttgagtatggctattgtttttatgtcataatctggacattagtagattgaactgtttttggaggggttaaacagtggaatcagtcaggacacctatagacaaagttgtagagttttctctaagctttccatattggtaaagtacactttgatcggatgagtagaactccagatatagttgtttttgtgtgtaccctctgaaattctggacagattctgaaacctgttttcaagcgcaaaatagaccatttaaatggcagaataaaaatatgctttctacataaaagttgtaggtatagttctgtagatttccaaaatgtatttatttgcagtcatagcctatttatattttgagatataaatgtttgaatcagcagtgttgtttatagtccgagcggcgttccttgtatttgcatgttaacgggctggggccgtaggggcgtattatttatttttttatatgcatgtttgagtgtatattctgaggttgtcttgtgaataggtggtggtgcttcggattatgcttggtatcgtctcttcgttgttagaggtaagtaaacatagcggtggtttgctacagctttaacctgttattttattctaccttcactttgaaattatatatcatcaactgagacattattatttgttacacagaggatttacctatctgaatcacacttattgattttacactgtatatggttatactttacgctcttgattataatacccttatactgatctccatcgaaggaatgtggttctgatgttatactctggaattcatactgcatttgcatcacttgcattgcatttgaagttatgtcgtgaacctatggttgcgaccatactggtacagcatcgtatattgccgtaatacgatgcagcttcacaccttgttgggtgtgaaggcaggagtacatatcattgcattgcatatgcacttattcatcctgttgggtgtgaaagcaggagtacatatcattgcattgcgtatgcacatattgcaggatgttatgagaattatcgatcgaagatatctttgagaagtgttttcttctctgagatttgtgagtatatggatttgattggtgacgtcacgatatttttcgtccatggatattcaacttgtctttacgtgaatcataacttagtatttaattaactatacaatccacttgtggtttaaatagcttgataaagccgtttaggttggaagtgtaacaagaaaccatattcttacaatccaccatccaaataaaaagtgactagtagatacaacggaggacatagctatttatttgaattatttaaaagcatgcatgcatgccatgagaacctcatcactctctggtcacaaggaacacatctctagcaaccaaagatgacaaatatgcatataattagccttattggtggtccatgaagctctcctaaccccatatatatatatatatatatatatatatatatatatatacatatatatatatatatatatatacatatatatatatatatatatatgtatgtatgtatatatatatatatatgtatgtatgtatatacaagtatatatatgtatatatatatatgtatatatatgtatatatatatacatatatatatatagtatataacatgagcatatgggtaaggaaagtcatctcaaatccacaccagttaccctcaatataaacggtgctaatggcccagaactagaccatggctctgctccagtatgagcactgacattttgaccttcatgatcactggaagaaaccaggtctgtatgagggaaaagaaatcaaaccgagtctttcagaaacaaaatatagaaatttaaacaagatggaataaattacatgttttgttacacatatttgcatcaacccaagcattttgacaccatcaaacccaagcatatgtgaaaattctgctgcataatccagtgcattatcacctgctatagttttccaatccttgaagatccttcagagaaccagaaaataggattatggctgttgcagttaaaagaatttataggttgctattgcagttaaaagaagtaacacgctgaaaaatccatagaataattaatacaattttagaggcaatataaatcccaagcatactctgattttggcattcctttgccgtaagccttttgaacctcactcccaacctgaaaataagtgttaaaatataaattctcaatcaattaactgtggagggcctagaaagaattacaaacaacagaaaaatattttttttgttaatttattttgacatgcaccatctctgaattaaatataccttcaaataagtggcaacagaccatgtttttatttcagatgagtgatatgctacaaactaagaaacaagaaaagaataagggtaactgctacctactgccatcactcatgtggtaaactgtcatcgaatgagtagttacagggagaaaatcaattgctagatgagggagagcatcaattgccttatacacatgatctgcatcagtttttagcaaacaaaacctgcatctgtaattctgtatcataagtcaatcggacgagagctaagtagacaagtgggtaagtccaaatctgtaatgtagaactcctctgaaatactgtacttatcaagtgggtaagtccaaagattgactacacaagaaactcaagtcaacttatcaaagatgaatagttacaaagtatatatcattctcaaaggcaggattaagaaaattcaagttactctatctatattcatagccataacctgcaaatactttactcctttgtccatataacagcagctccaaaggctgttgtctggaagaagatgagaaaagaactaaagatgtgccccatacatattatatacaatatcagcattgaagtaagaatcatatgctacatgctctagaaccttaagaaatttcaatgttgtcatattaatcttcctcagtttgtatttgtttactgatttttgttcctatatgctacagtgtttgaaccaactgcatggtttctgtttcaaaacgtgaagggcatatctccagctccacatacctatattagtagtgcatttgtaaataattggcaatatttcagatttggacttccatagtcactgatttcaggttatggtggtagccctttggactatgttattgccaggcagtctacatgtatcatctgaaaataaaaagctgataaatcagtagaaatttcatgaagcatacatttcataccaattgacaaactcagtcagcaactcagcatggcacaagcctggaatcgggataaaaaataaagttaagacacggagaaaaaaagtaagataaacatagcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtccaaattgagcaggaagaggataataagccatcagtttctttctaaatggttcctatgcttacattgaccttgttttatcagaatttttgagtggtactgatgaggccattgtcgtgtcttttcgcacgtcgccgtcgtcagatcatggctcgccatcgatatcccaggcttgctcagaggacgccatagggttctggaagcccttcctccaccagttccaaaggtatgctcatcgaaagctcgctcttgactgcgatttggttactgattttgatctgttgtgcattgatgggatggaagaggaagatgggtcaggggatctggggagtcatgggctcgttttacggcacatgaataagtatagtattgggatacatattctttttacaacgttgactaaaagaatagctatggtgatttgcttaattaatcacttgtgaatgccattgttgtatgtatcaattatttattcacttctgaattacggagtgtaatgatttctcatggattatcatgtattttgcagacaggaggctttagtgagaacatgattcctactgtatgattcaatatgagaaaggcaacaaaagttaatgtcacaataaaattgtgggatcttggagactccggagcatatgtgggagagatattgttgtgaagtttctgcaattgtgtaagttttttttcctgtctacttactaatttggtgcatgtgcagcaggaatggcactatactaagtagttgtcatgcttagtggttgttggttacacatgccaaccaattgttttcatgtcattttgatttgacctctgctgaaatttgggaagattttgtaaatgtaattactttaaagtttcaattttgaccccaaagcagtggaggcacttaatttacatttcagcttgttagaaataacatttcacatttcagtaggcgagagcataactgccctcctaattgttcctgatgattcacgcagaatgctaaggtggtcccttttttttcaaattgaatagttatattattatctttttaatttaatcatcacacccttttctcttttaaagtcatccaggattattgggacgggaacattaatgtggaacaatttttgtagtggagaaagatttcactgacgagaatgtcacatttgagaactcacctccccaggtgcttagttttcacttgttccttttgtttttactaaacttgttcgtgttccatagagagatgcctatgcgatgagtgcaaaaagctgagctaccatttgtggacttgtggtgcagcggtaagggcatacagatgtagtttgagtaacaacagatagatgtgccttctacaattgcaggtatgctcatccgttcaactcttggttaaatcacttcattatttaagataatacaccagcattacttttgttaatttatgagattttgacttatgtccaattaataaagaattcagggtacgttatatttgcactatggcaaacaataagtttaatcatttttaaattgttgtgtttttctccttcttatgttatgcttggatggatgaacacattcaggtgatattattactggaagacgagaaatcggattatgttcctaggtcgtccatgggaactatttgggaggcttgcgtttgcacacaatttagtgtacacctgagtccaaatatttcagggaagttaattgttaaaaaattatcactgttttttcatgggtgtcaacataaaattgccagagatttatacatagatcatggtaattaaggttggcaattctcaatagactgatgctaatgtatccagtcttgcactttggtcagtgacattcacattcctttgtagcacttcctgtcttcctgcaaattcttgagttgtctttcatgcagaaaggtgtcgatacttaaaagttgatgttttgcctctggccatgacagattatgtgtattgcttgtagtcttttgtttggtgaacaaagtaatctctagaattgtactgattgcactcgcagttgtgaacttttgttctgaccatgtatgttttcatgcatagagaaagaagaaaatctgtacctacttaaaaaaaaatggaatacttctattcacatctcgtttcgtcagtcatccgtcttggtagcgcccgtttagtcctcttgatgtgtcgtgagcgattggagagcaacaaacaagagctgtttttcttcccagtttgtaatggggatttttctttctcccttggaatgatgggaattggatatgtacatgatgttccgtacttccgttccacacttagctaaaaacacttttcagtagtggacgaatatttaccacagtgtggatttggatcccagggtagcgactcgatagccagtccacgcctaaccaaaatgagccatgtttgttttttcgtggcaacgcataggcatgctattatagaaaaaaaaaatttgaagacgagtttatgaagtcggggtcccacatgtcatatgtgcgcccgttgtttttctgtcatttctctggttactactgcacgaacacggaccaactctgttttctcctttctctgttaccgcacggacacggcccaactccatattctccttccgtagaaccaaccactgtaatatctcctgtaattttttttacggtgaatcttaaatcttctttattatatgcttcgttgacaaaacgtatattgcattttgattatttgaattgctttattaaatatttggatatgtttgatgttcaaggtgttttgtttgtgctttattttcatagtagtcttctatctatgttgtcttttcatattcttataaacaccatgagattggttatttaacatattttcacctgatataattttgcatttcccgtggcaatgcacgggcaccctcctagtatacaatcggttttgttattcctataatttcaagcttcatacagtgaactaagttagttcctttttttcatcacaatactacacctatagagtacccaatatgacaatgtattagaaaaactaaaagataagcagtgcacccacaaactacttcattaactaaacatgaccaaataaaaaagggcaaggaaggcaactgacatacttgagaaacattcttgctgtcctcaggataattaaaagtagagtaggatacatcctgattaactcatcatgaacatggagaatgattaaataaaagaattcgaggaagcttttcaacaatgtttttatgtcgagaacataataagacaggaattcaactcttcaggagaccataattaagtcagcgatgacttgggatatcaataccaatggtgatcatcaccataggtaacacagccacatatatatacggttttagttctgcgcacaatttcttggaagggtagataataatactaatccagtaaaaggaaaaggcttactttcattgtcaggctgccatgaactgctgctgaagatcttctattgcagctacctctttctccccagctgtatgtcacaaacaactaggtaaatcacacgaatctccacagctgtatgtgcggtgaatcgagtgttgagaggtcgcagcgccgatgccggcaccggcggcgagtcacccggccgggaactagtcacccacgaggtcgccggccggcggccaggggttgcagcgcgcgtgagattttttttttttttacttttctgctcgtttttttttcgctccatccgaggaagggataaggtatatatatattactgtaccgcaccctaataactaaaacacacccatcacaccctacacccccacccctatacctggccaaatgggccgtgccaagccgggccggcccaagcacggccgcactgtagaaggcccaggcccggcacagcacgccggcctgtgggccgtgccggcacggcccgtttacccgtgccgtgtctgggccgacgccatagcccgtgggccagcacggcacggcacgtttactgtagagggctggtacggcacggcacggcccgcgagcacggcacggcacgggagcggcctagggtaggcacaccgcgcacgtggcgccaagcggccgagccaccgagggcagccgcggggccaggcggcgggaagcgcgcgtcgctgcgttcgcgcgtggcgcatggcaggcggcgtcgcgacgtgttgctggggctggtaggctgggtcgctctcgctctgactgcctccgtcactccgtgcctcgttgcctcgttgggagcagccgagacggcgacaggcgactcagcgagaccccgtacggcggccgaacagctagtcaaacgacgaatgcgagagtgccacgtgtccccaacggctagtgagctaatccaacgaccgctgtttttgagaagtagccgttggagagcaaaaaaatggaaaaaaaattcgaaaaaaatatgaaatttatttctataaataggacacccaccggagcattctgaatcatccatacctcccattttgtgctctgttgtgctctttcgtgtgatagatcgattttttgatttagacaaaattttgtctaaaatcaaaaatagtttgtgactaaaaatagtgcatacaagaggtgtaaagccaagcaaaggtggtaagaaagaagtacgtcatatattcagttttatgtattattttattttatgttatgcgaataaatattctgaaatttgtttatgttgttttaaattttcagaatggacgaatcgaacattccatcgttcacgttaggtgatttcgaccctaactacgtgtcgaggtcattcccaactggtgagtatgatgccaccggatcggctccaacaccaccagttatggagccaccggcgggttcagaagcatccggcactatgagtgggagtgcatcgacgaacaccggctcaaagagatcaagaacttccggtgtttggcaacatttcgatgaggtggccatgacaggccctgatggaaggcaggtaacattcgcgagatgtagaatatgcaaaaataagttatctgcaaaatcatctggtggaacaggacatttgaagcggcatgccgaggcttgtgcaaagaagcaaggaatccaactacgacagcaacaactactactaaatcctgatggtacggtacgtacgtgggagtatgatcctatggtagctcgagaaaatcttgcccgtttaattgctagacaagatttacccttgaactttggtgagagtcctgcatttgaaaattacataaaaaattctcataatcctaggtttcaagctgttagtagacaaaccacaacccgtgatttgaaaaatgtctatgacaaaggttatgaatcactgaaggaattatttagtacatgcaccttttctgtcagtgtcacctcagacatatggagtagtagggctaaagaggattaccttagtgtagttgtacatttcattgatgatgatcggcaaatgcaaaaaagagttcttggcttaaggttaattgatgtttcacataccggtgaaaatatagcagagagaattcgagaggttattgatgagtttaaccttgcagataaaatttttgctgtaacaatggataatgcatctgcaaattctagggccatggaaattctacaaccattattttgtatttatgctcaatcatttcttctgcatcagcgttgtgcatgccatatcattaatctaattgttaaatgtgggtttaagagagttaatgtacacatcgacgctgttcgtcaagcaatcacgtggttaactgcttcaaacccacggattgcacagtggaaaaggtattgttgtgcatcgggtgagcccccacgtaagtttttaaccgatgcagaccatcagtggaatgccacttattttattttaaaggttgtattaccttacaaggatttacttactgttttccttcaaacacgtaatggcccaaaaaacagtgacggccagccaatactgactgatcatacctggcacattgttgaaaggttcaatcaatttcttgaaacgtttcatgactgtactcttctgttatctcaagtatattatccaacagctaatttaattttgcataatattcttgaaattgccactttgttgaaagagtatgaaaatgatgaccttttaatgcccgttgtctttaatatgaaacaaaaatatcttaaatattggaaagacatccccatgttgtattcttttgcatttattcttgatcctaggggaaaattacggggattcctcaatattctttcacttattggagatattattaatgttgattattctacctattatgctgatgtcaaaactaaattctatgaggtattttgaaagtatgaattaaagtttcagggagatcgcttgcaaagacccccacctgtccctgcagcaggtaagaaaaaattacagtggagcagaatttggggcggttcatcttctagccatggtggtggtaccagttcatcagcagcaagtggggacgctagatcgcatggtcctgccgaagagttgtccaactatttggatagcgatgccatcaggcatgaaacgtcagacttcaacgtactcgggtggtggaatgatcataagatgtcatatcctgtgctatcaaaactagcacaggatgtgttgacggtgcccgtatcttcggtatcctccgaatcagccttcagtctatgcggaagaattatcgaggataggagaacaagtctgagcagcgatcatgtggaaatactattaagcgtcaaagactgggaacttgctgcagaacatacccaatacactgctgacaaccaagaattggccgcacagttcgaaaacctttatttagatgacgaacaattagggtagctagtttatattttttaagtattgacctgttggctgtactcttttctttgtcatggttttctcaaatatgagtttttacatgacaaagtttttaacgaggcagcatgtatcatgtaaacatcaataaaggtcattactcttttttt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0801700, RefSeq:Os02g0801700