Os10g0457000

From RiceWiki
Revision as of 21:09, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0457000

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001071294.1 GI:115482331 GeneID:4348798

Length

4436 bp

Definition

Oryza sativa Japonica Group Os10g0457000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:17207962..17212397

Sequence Coding Region

17208067..17208171,17209138..17209186,17209366..17209454,17209556..17209612,17210062..17210124
,17210206..17210271,17210898..17210984,17211069..17211162,17211729..17212186

Expression

GEO Profiles:Os10g0457000

Genome Context

<gbrowseImage1> name=NC_008403:17207962..17212397 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:17207962..17212397 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgacgcgcatcgcgcccggcgtgggcgccaacctgctcgggcagcactcggcggagcggaaccaggacgccaccacctacgtcggcaacctcgacccccaggtttcggaggagttactatgggaattatttgtgcaagcaggccctgttgttaatgtctatgtccccaaagacagagtaacaaatctacaccagggctatggatttgtagaattcagaagtgaagaagatgcagattatgctattaagattttgaatatgatcaagctatatggaaaaccaataagagtaaacaaggcttcacaagacaagaagagccttgatgtaggggcaaatctttttattggcaatctcgatccggatgttgacgaaaagctcctgtacgataccttcagtgcgtttggagtgattgtgactaatcccaagataatgcgagatcctgaaactggaaattcacgaggctttggctttgtgagctatgactcctttgaatcatctgatcaagctatagaggcaatgaacaaccaacatctatgtaaccggccaattactgtctcttatgcctacaagaaagacacaaaaggagaacgccatggcacacctgcagagaggttgctagcagcaaataaccctggttctcagaagaataggccacacactatgtttgcaagtggcccgcctacgcaagggcttgcaaatggtgcacctgtgcctcgacctttttccaatggggcagtgccacctcagattcaacatgttcgaccgccgccacctcctatgcaacaattccctccaatgcagatgaatggtcagcctgtttggcctccgcagaatacacagctaccaccccacatgccacctcaaatgcattacaggcctgcagtgagaccacctccaccaaacatgatgccaccccctcctcttggcatggtaaggcctccgccgcctccttccagtatgccagctccacctatgtggaggccacccccacccccacaacaagctggtggtatgccaccacctcctatgtccatgccaccgccgccaccaccaccttctggttaa</cdnaseq>

Protein Sequence

<aaseq>MTTRIAPGVGANLLGQHSAERNQDATTYVGNLDPQVSEELLWEL FVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILNMIKLYGKPIRVNKAS QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVS YDSFESSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNR PHTMFASGPPTQGLANGAPVPRPFSNGAVPPQIQHVRPPPPPMQQFPPMQMNGQPVWP PQNTQLPPHMPPQMHYRPAVRPPPPNMMPPPPLGMVRPPPPPSSMPAPPMWRPPPPPQ QAGGMPPPPMSMPPPPPPPSG</aaseq>

Gene Sequence

<dnaseqindica>106..210#1177..1225#1405..1493#1595..1651#2101..2163#2245..2310#2937..3023#3108..3201#3768..4225#attctcgaataaacccctcaccacggcggcgccgcttccgcaactctcctcctctcgccgccgccgccgccgccgcccgccgcccgccggagcccgaagccgggcatgacgacgcgcatcgcgcccggcgtgggcgccaacctgctcgggcagcactcggcggagcggaaccaggacgccaccacctacgtcggcaacctcgacccccaggttagggttcctcccccttcttgctcctcccatctgtcgccgtagctgtagatgtgttcctgaagcctccacagggaggggcttgtagcgcccatggctctgtgggcgttcggttggtgggggtttgtgtcgtcctgtcgccacgagcaaagcctgaagtggaaattgtgccgatgttgttgtgagttccgttggtacttgatggattaacgatttgttgagcccgttgagttaattggtcgttgttccgtggcgaaggtgcgtgtccatcgttgatttgttcagctcattgagttaatttgtcacttttcgacgacgaaggtgtgtgcccatgtagctagatttgcgttcgaataagcttaaatgaagtgttggcagttaatttccatgtcggctgtgagtttggaaagcattgtacatgaaagaatcgtggttggatgaactgtgcagattctcctaggtggtctgtttataaactatcgtgcatgatatagcagcatagttggtggaactgttcggaatctcctagttggtctgcttatatgtcctaaaatctgaaagaaatacttgtagtcctagttggtctgcttatatgtcctagaatctgacagaaatacttgtaaattgcttgccaagttagtgtatgatatttaaggagacggcatgtttccatgttgaattatgttagttttggactttattattgtaggaaacatctgatagctaccattctttgccctccctgcaggaaattatgaacactttatctatgtgattatagattaacgcaaccactaaatcaattgtcttctatcaattaacaaagtattatacttgctaaatgattttatcttttgtgtacaaaaaacatattggtcttacctttcgtgtgtaagataatatatgatccctttggaaatcttatttccatgcgctcacgctgataattctaccggtattttacaggtttcggaggagttactatgggaattatttgtgcaagcaggccctgttggtaagtatcagtttgttccttgatagtttgactgattttgctcggaagtatctttcagcattatgtttctgttttatgtgctgtttgtgacttatcgcctccctgtgccagtgtgccacacatcatggatttactattatggagactgattaatggagttcctttttgtcaatttgtagttaatgtctatgtccccaaagacagagtaacaaatctacaccagggctatggatttgtagaattcagaagtgaagaagatgcagattatgtaagtctatcttgggtgaaggcaaatagtacttttctactgtacactttcaatatccattcaatatagcttttctgtttcttatctatttatttttttaggctattaagattttgaatatgatcaagctatatggaaaaccaataagagtaaacaaggtaagtacctcttttataatctcctctgcctcttttcagtacttctctcttgtatttctagccaagggtgctcgtgggtcccttgaactgctgaatttgctgaattttatgacagatggttgatagtttaatattactatattagtgtatgagtttagatgattcttcctcaaaacatcaactgaacagatactctgatttgttagtgcgtgcgatgattttttcagaaactaatattattctgaaatgaacatctgggttcattcaacttaatactgtcacattgtggtttagtagactttatttgcagggatctgtagtttacgttcaattctattgatttttttttcagtatactgcttctaaaactttctttattatatctaaacattttcgaaatataggatttaaatatcacatggtaacatgattatcttttcttattccaggcttcacaagacaagaagagccttgatgtaggggcaaatctttttattggcaatctcgatccggtaaaaacttgtggtctagcttttctttatcagctcgtttgcatgcgaagagtggctaatggctttgtgttctgtgttcaggatgttgacgaaaagctcctgtacgataccttcagtgcgtttggagtgattgtgactaatcccaaggtatcattcaagaaaaccttttactgcatttgtccgcttatgtaatctgttctgtgcacactaggctttagacacttgcatcaagattacttctcttatgatctatagctatgcagtaatctgacttgtgagcattcctccattgagaagtcaagaagcaagcttgaacaacctcttgagtggtgcttaagataacctgatattcctaatgtgttcatcatagttcacctgatattcctaatgtgttcatcatagttcagctaaattctaatggaccttgcttcagcagagtttttgcataacagtatttagttccaaattggcaaattgctaggagcttatcagctcagggcattattcatattaattcttatcatgataatattacagatatttgatatgttagaatcttctgttctcttttcaattgccatgctgcacaggatgtgttcttagtcccatagcatcaatctatcttgccaagtaccacgtctgcttcaatcagataaattaattatctgattttaacatgtactacttcaatcgtttaccatgcagtgttaatagtgtatttccagtgttggcatacagtaatttgctttgattttttttatttatctttatagataatgcgagatcctgaaactggaaattcacgaggctttggctttgtgagctatgactcctttgaatcatctgatcaagctatagaggtaacacaattgccacaataagttctatattttgtttcttccatttattgaatgtgtttcaccttatgtgccacaattttccaggcaatgaacaaccaacatctatgtaaccggccaattactgtctcttatgcctacaagaaagacacaaaaggagaacgccatggcacacctgcaggtattgtgttttcttttttctttttcccatctatttgtgttccttgccctctcagacacaccgatgtgaatattcacttgaatatcttgaattgactctctgttgcctacttggttgttccatatatccatgccaactttctgttcttgattctgaaatgataaatttcccgacattttccatctttgtgccttggaaatgctagggttgagtttgatgaggagttcttttgtggagttgaatcttttgtgctggcatatttaaccctgtttagtgttcaattattagacgttgaaggttcacaaagatgttatataatttcttggattatcttattttattttgagtatccatagattggatcttgatataacatgttacagctattactagacccatctaatttgtcatatggaaaacgattttcattcttttcacttattcaccattgccgttcattcaattgtccattgaaattctgaattctgactacattgcggtttactaaagttttgttccaacatattgttacaatcataatgattgatatattcttgtgttgacagagaggttgctagcagcaaataaccctggttctcagaagaataggccacacactatgtttgcaagtggcccgcctacgcaagggcttgcaaatggtgcacctgtgcctcgacctttttccaatggggcagtgccacctcagattcaacatgttcgaccgccgccacctcctatgcaacaattccctccaatgcagatgaatggtcagcctgtttggcctccgcagaatacacagctaccaccccacatgccacctcaaatgcattacaggcctgcagtgagaccacctccaccaaacatgatgccaccccctcctcttggcatggtaaggcctccgccgcctccttccagtatgccagctccacctatgtggaggccacccccacccccacaacaagctggtggtatgccaccacctcctatgtccatgccaccgccgccaccaccaccttctggttaaacatatgctggtgaaggttccataccatatggcacattgtagctgtagactgagaatgttggtacctttcttatatttccatgtaacttgcaaacactaggagaggatcagaattcagtgagtttagctgacactgatacaaattctcgaggttaactgtattttgttggaaatacatgaattttgtggttaactgtatttttgtgatttc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0457000, RefSeq:Os10g0457000