Os01g0228600

From RiceWiki
Revision as of 18:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0228600

Description

Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p)

Version

NM_001049014.1 GI:115435441 GeneID:4327189

Length

3194 bp

Definition

Oryza sativa Japonica Group Os01g0228600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7099053..7102246

Sequence Coding Region

7099240..7099758,7101559..7101990

Expression

GEO Profiles:Os01g0228600

Genome Context

<gbrowseImage1> name=NC_008394:7099053..7102246 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7099053..7102246 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggagctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgactacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtcgacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggcatcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacacccccgacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgcaagatcccccaggccgaccgctacgtccgcgccggcaagtggaagtccaagggcgacttcacgctcaccactcggttcagtggcaagagagtcggcatcatcggtttgggcaggatcgggctcgccgtcgcgaagcgagtggaggccttcgactgcccggtgaactactaccagaggacgaagcaggatcaccccggctacacctactacccgtcggtggtggagctggcggcgagcagcgacgtgctggtggtggcgtgcccgctgaacgagcacacccggcacatcgtgaaccgggaggtgatggaggcgctggggcccaggggcgtgctgatcaacatcggccgggggccgcacgtcgacgaggcggcgatggtggcggcgctggccgacggccggctcggcggcgccgggctggacgtgttcgaggacgagccgaacgtgcccgaggcgctgctcgggatggacaacgtcgtgctggtgccgcatgtgggcagcgcgacgcacgagacgcgcacggccatggccgacctggtgctcggcaacctggaggcgcatgtcgccggcaagccgctgctgacgcaggtggtgtga</cdnaseq>

Protein Sequence

<aaseq>MDSLGVLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAH ASSIRAVVPYALQGVDAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPDVL TDDVADLAVGLAIAALRKIPQADRYVRAGKWKSKGDFTLTTRFSGKRVGIIGLGRIGL AVAKRVEAFDCPVNYYQRTKQDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNR EVMEALGPRGVLINIGRGPHVDEAAMVAALADGRLGGAGLDVFEDEPNVPEALLGMDN VVLVPHVGSATHETRTAMADLVLGNLEAHVAGKPLLTQVV</aaseq>

Gene Sequence

<dnaseqindica>2489..3007#257..688#ttttatcttccgatgaggaattagttagctctcgaacagtagtacgagatttgtgcaagttgtggtcctgtcgtcatcctgtggagttgtggtgagtgtttgacgaattttttttttttttggcggctcgattgcaacccgcggcccgcaacaaatccgacgccaaatcggacacggccggcgactccggcgacccaccaccacacaccaatcctcctcctcctcatcgccgcctgcgacggcgaggcggcgagcgatggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggagctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgactacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtcgacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggcatcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacacccccgacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgcaagatcccccaggccgaccgctacgtccgcgccggcaagtggaagtccaagggcgacttcacgctcaccactcgggtcggtttcttttttccgaattccttagcttccgttctactagtattatccatttacgattttgcttaatctttctccaaaaataaaaagttcttaggtttgatccgtagtttatttacagtttggtttagtcgaagcaaatatagcacaaaaactgattgtacagcacgaactgtttggttgggtactattgggtacagtggaaaatacgattgaatggaaggaaaataagtcagaaagggagagctggaagtgagaaattgttggtcctgatcagatgtggctctagtttttgtttcacatcattagatatcttccttagatagtctaatcttaatttgatcattcaaacatcgttcttttataccatgtgaactatttaactaaggaaggaagcacgggaaatggtttcagagctctggtggatgcgtttttgtgagttggaaatgcatcttatttggctgaaatttaaacttgtttcgagcaggttgttgctgattgtagttgcagtgattttctatgggtctaaagagaatcatcgtgttcagaagttactcatctgataatgctgggtgctaattttgggttgcagatggttcttactgagtggcgcactgatagcagtcatatattaggatgttagtctatttaccggagtttatccatccattttattatgcatatgctgctgttattgtgcctggagaatttttcctttcaattaaaattgcattacagtaaactttatgttcagatgcagtatctgaaggacaatatagctagaagaaagattaatctgctaacgttcaattgattatgcataaattggtgtgttcgtggaaatgtaatgcttggtattcttatttttctgcagttcagtggtaaaagagttggtattctggggcttggcaggataggcttagccgtagcaaaaagagctgaggcatttgattgcccaatcagctatcattcaagatcagagaaaccatttccaaagtacaaattttatccaaatgttgttgacctggcagccaactgtgatgtgctagtcgtagcatgctcacttaatccagagacccgtcacattgtaaaccgtaaggtcattgatgcactaggaccagagggagtgctcataaacattgctcgtggagcacatgtggatgaacctgagcttatatccgcgcttcttgagaaacgcttgggaggagcaggccttgatgtgtttgaggatgaaccctttgctccagagcagctttttgagttagataatgttgtcttagtgcctcatgtggggagtgacacagaagaaacatgctgggcaatggctgatctagttctacaaaatttagaggcacatgcattgaatcagcctttactcactccagtcatctgattgtttctgttagaagtctgggatgattgtgccaccactactacattctgtaatcccaattagttttctatcttctgtttattagttcttcattttacccatcattagggacatatgccactcttttgtaagacatcattttatcggccttatggctgtcattcaatcaaccatgacaaataagatgatcagttccagaagttgaatcttcctgtctttggatgatatattcacatattctcagtttctccttcttacaattttccattctgtcagagcctattctacccttcccagttttgtcatcaccctattatctttctcatcatcttgtaacaaatatcatctttctttgttcaacatgatatgatcttctgatgagagttttttgtttatcctttttgcagttcagtggcaagagagtcggcatcatcggtttgggcaggatcgggctcgccgtcgcgaagcgagtggaggccttcgactgcccggtgaactactaccagaggacgaagcaggatcaccccggctacacctactacccgtcggtggtggagctggcggcgagcagcgacgtgctggtggtggcgtgcccgctgaacgagcacacccggcacatcgtgaaccgggaggtgatggaggcgctggggcccaggggcgtgctgatcaacatcggccgggggccgcacgtcgacgaggcggcgatggtggcggcgctggccgacggccggctcggcggcgccgggctggacgtgttcgaggacgagccgaacgtgcccgaggcgctgctcgggatggacaacgtcgtgctggtgccgcatgtgggcagcgcgacgcacgagacgcgcacggccatggccgacctggtgctcggcaacctggaggcgcatgtcgccggcaagccgctgctgacgcaggtggtgtgagctaattgagtgactggatgattctgatttgattgattccaaagcaggtgcaattcgacaaaatgtagtatgtactgtttcaggatgtgaaaaatctgttttccctttttgtaaacacggtcggtctgggacgatccagtaataacgatttaatatttgtcattggaaatgtgaaaagtgtgttggg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0228600, RefSeq:Os01g0228600