Os01g0262500

From RiceWiki
Revision as of 18:48, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0262500

Description

TRAM, LAG1 and CLN8 homology domain containing protein

Version

NM_001049187.1 GI:115435787 GeneID:4325124

Length

1896 bp

Definition

Oryza sativa Japonica Group Os01g0262500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8882473..8884368

Sequence Coding Region

8882773..8882913,8883004..8883123,8883769..8883864,8884056..8884169

Expression

GEO Profiles:Os01g0262500

Genome Context

<gbrowseImage1> name=NC_008394:8882473..8884368 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8882473..8884368 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggcgctggcggtgacgctgtcgtacatggtgtacgacgcggcgtgctgctacctcaacgacgacgtcagggtggacaacaccgtgcaccacctcgtcagcatcgtcggcatcgccgccggcctcgcctaccggaggtgcgggacggagatggtggccagcctgttcgtcacggagatctccagcccgctgctgcatctccgcgagattctcaaggagttcggcatcaaggacaccgacctcaacctcctcgtcgatattttattcgccgtgatattctcggtggcacgaatgggttttgggccatacctcacgtacgtcaccgttacggcagacaaccccatcctcattaaggcgatggcgacaggcttgcagctggtgagtgcctactggttcctgaggatcctaaggatggtcaggcacaagctggggaagaaaagaccagcgccgaaagttgccggcgattga</cdnaseq>

Protein Sequence

<aaseq>MKALAVTLSYMVYDAACCYLNDDVRVDNTVHHLVSIVGIAAGLA YRRCGTEMVASLFVTEISSPLLHLREILKEFGIKDTDLNLLVDILFAVIFSVARMGFG PYLTYVTVTADNPILIKAMATGLQLVSAYWFLRILRMVRHKLGKKRPAPKVAGD</aaseq>

Gene Sequence

<dnaseqindica>301..441#532..651#1297..1392#1584..1697#gtggtgtccggggtggcgttctggtggacggcgttcctgctggcgcgcggcgccttccccaagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccgtctccctcgcctgcctctccgtcgccgactggtcccgccccctctcccccctcgccgccgcctcctcccctccccaggtacgtattatacctacacgtacaacgatacgtacaatacatacgtacgccaggtggtcgtcgtcgtcttcctcaccgtcgtcgtcgtcgtgggtttggctgcagatgaaggcgctggcggtgacgctgtcgtacatggtgtacgacgcggcgtgctgctacctcaacgacgacgtcagggtggacaacaccgtgcaccacctcgtcagcatcgtcggcatcgccgccggcctcgcctaccggagggtaatttatctagccactattaaatttagttggcatcattcagcagtgaggctagctgggttagttttgctaatattcgtgataatacagtgcgggacggagatggtggccagcctgttcgtcacggagatctccagcccgctgctgcatctccgcgagattctcaaggagttcggcatcaaggacaccgacctcaacctcctcgtcgatgtgcgtacacacgttctctcgatccttttttttttatttttactttccggctttatactccctcatttcatgttgtaagtcattttacccttgttttttttaagtttgacccaaaaaactaacagcatccatcacactaaattaggttcagaaaaactattctctttgcttcatattccaattaggttcaattttttaggtttaattatgtttataaaaaatataacagtattttcaatacaaaacaaatatattattaaaatatatttaatttcatatttagtaaactaatttggtgatgtagatgctgctaaatttctttgtaaacttgatcaaacgaaaaaaaattaactaggaaaaatgtcaaaataacttataatataaaacagagggtgtaacatttaatatatttgttttctgtaaaaataatattgttatatttttctataaacttgattaaaattaaaattgaactagaaaaaaaaagtcaaatcgacttataacacgaaacatatatagatgtagtttttagtttttgaactaaatcagctcaaatcttgtaggaaatttataaaatttattgggtttaattaaataaacttttttaaaaaatgaaactcatgtgtattcgctttgcatgtgcagattttattcgccgtgatattctcggtggcacgaatgggttttgggccatacctcacgtacgtcaccgttacggcagacaaccccatcctcattaaggtatcacaatccaccattctatatccattatcattatctgaccaattcagtccaaatctctctctgttgcaccggaatctcaactgcataccaaattctcatctaccattttctgcatgcatggtacttgtacagttatacatatacacaaacctgatgttttttatcctttttttttcttcttcaacaaggcgatggcgacaggcttgcagctggtgagtgcctactggttcctgaggatcctaaggatggtcaggcacaagctggggaagaaaagaccagcgccgaaagttgccggcgattgatgcaaaatcttgtttgggatcgagccgtgcttgtaacatagtattgtttcatggcaagaaatcaagaatgtctcaaacaatggatatgatgatttgtactactctagtaatttaattagttttaccatataattgcccactgaattaattaggaacgatttcttttgtgggttcataaaacaagtgtttagagatttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0262500, RefSeq:Os01g0262500