Os01g0558200

From RiceWiki
Revision as of 18:52, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0558200

Description

Glu/Leu/Phe/Val dehydrogenase family protein

Version

NM_001049868.1 GI:115437595 GeneID:4324672

Length

5807 bp

Definition

Oryza sativa Japonica Group Os01g0558200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:22775739..22781545

Sequence Coding Region

22776123..22776696,22777206..22777332,22777418..22777619,22778195..22778281,22778357..22778416
,22778535..22778621,22779186..22779257,22779410..22779465,22779547..22779632
,22780162..22780252,22780328..22780485,22780562..22780653,22780845..22780925
,22781017..22781090,22781176..22781251

Expression

GEO Profiles:Os01g0558200

Genome Context

<gbrowseImage1> name=NC_008394:22775739..22781545 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:22775739..22781545 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgagctcaacctattgcggcagcaccagcaccagcaccagcaccacctggtggtgcgcggcctcggcgaggagatcgacctcgagatcggcccgggcgacgacccctccttccccggcgcggccctcgtcggcgtcacccccggcgcgcacgaccccgcggacgaccacaagagcctcctcatcccgtgctcgcagcccgtcgccgaggggcagccgcagccgacgccgccgcaggtggaggagcacgacgggctgctacggctgccggggcaaaccaagaagaagaagaaggtggtgaagaaatggagggaggagtgggcggacacctacaagtgggcctacgtcgccgtgcacgacaacaccagcaggatcttctgcaccgtgtgcaaggagtacgggcggaagcaccgccggaatccctacgggaacgaggggagcaggaacatgcagatgagcgcgctggaggagcacaacaacagcttgctgcacaaggaggcgctgcggttgcagacggcgtccaaggagaacgcgcagccccctgagatcgagaggccggtatatgtcaaagctctgtcgaaaactgcagcctctatacttgaatctatcctaaagaaggaccctcatgaagctgagtttatacagtctatccaagaggtggttcattccttggaaccagttttggtgaagaactcccaacatgtccaaattttggagcgtttgttggaacctgagagatgctttatcttcagagtgccatgggttgatgatagaggtgaagcacatgtaaatcgaggcttccgtgtgcagttcagtcaagcgttaggtccatgcagaggtggtcttcgtttccacccttccatgactttgagcgtagcaaaatttctagcttttgagcagactctaaaaaatgctttgtcacaatataaacttggaggagctgctggagggagtgattttgatcccaagggtaaaagtgaaagtgagataatgcgtttttgtcaaagtttcatggatgagctgtatagatatttggggcctgatcaggattttcctgctgaagatgttggtgtgggtccaagagaaatgggttatctttttgggcagtatagacgcctttctggtcattttcaggggaattttacagggcctaaaatcttctggtctggttctagtttccgaacagaagctactggatacggactggtattctttgcacgtgtagtgcttgctgatatgaacaaggaactcaaaggattaagatgtgtgataagtggttctggaaagatagcaatgcatgtattggaaaagcttctgtcatgtgaagctattcctgttacagtttcagattcgaagggttatttgttagacacggaagggtttgattacatgaaatattcagttctaaggaacatcaaggctcagcaaaggagcctcaaggaatacttgaaatcatatccaaatgccaaatatatagatgatgcaaagccctggagtgagaagtgtgacgttgcattcccttgtgcatcacaaaatgagattgaccaggcggaggctcttgcaataattaactctggctgccgtgttcttatagaatgttcaaatatgccttgcactgctcaagcagttgatatcctacgaacagcaaaagtagttgttgctcccgcaaaggcaactgccgctggtggggtagcagttggagaactcgaactgaaccctgagttcagtttgatgcagtggtcagtggaggattttgagaacaaaatacaggatgcggtgaaacaaacatatgacagatctatcaaagctgctcaagattatggaatcatgaaagagaacccagagtcgttggtgcatggtgcaaacatatgtgcgtttcttaatattgcacaagccatgactgatcaaggatgtgtctag</cdnaseq>

Protein Sequence

<aaseq>MDELNLLRQHQHQHQHHLVVRGLGEEIDLEIGPGDDPSFPGAAL VGVTPGAHDPADDHKSLLIPCSQPVAEGQPQPTPPQVEEHDGLLRLPGQTKKKKKVVK KWREEWADTYKWAYVAVHDNTSRIFCTVCKEYGRKHRRNPYGNEGSRNMQMSALEEHN NSLLHKEALRLQTASKENAQPPEIERPVYVKALSKTAASILESILKKDPHEAEFIQSI QEVVHSLEPVLVKNSQHVQILERLLEPERCFIFRVPWVDDRGEAHVNRGFRVQFSQAL GPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRF CQSFMDELYRYLGPDQDFPAEDVGVGPREMGYLFGQYRRLSGHFQGNFTGPKIFWSGS SFRTEATGYGLVFFARVVLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIPVTVS DSKGYLLDTEGFDYMKYSVLRNIKAQQRSLKEYLKSYPNAKYIDDAKPWSEKCDVAFP CASQNEIDQAEALAIINSGCRVLIECSNMPCTAQAVDILRTAKVVVAPAKATAAGGVA VGELELNPEFSLMQWSVEDFENKIQDAVKQTYDRSIKAAQDYGIMKENPESLVHGANI CAFLNIAQAMTDQGCV</aaseq>

Gene Sequence

<dnaseqindica>385..958#1468..1594#1680..1881#2457..2543#2619..2678#2797..2883#3448..3519#3672..3727#3809..3894#4424..4514#4590..4747#4824..4915#5107..5187#5279..5352#5438..5513#attgaccgttcttctgccttgtcggaaactgcctccatttcttcactacccctccgcgacacaatctccggctgccgcgctagttgattccccctcgccgtcgccggccacctcgccgccgccgccgccgccgccgccggggaggtccctccccacgccgttctctgcgcccccccagatcgaggccttgctcgatcgaagaccttagccggcgcagccgcggaggtggcgcgcggtgcctgattccccacccaaccaaaccctagagcccaaatccggagggcggggatttgcgccgccgcgggctggtgcgagtctcctccagggcgtggtccccctcatggcgcggcggcgcacgtgcgggtgagctcgggccaccaggccatggacgagctcaacctattgcggcagcaccagcaccagcaccagcaccacctggtggtgcgcggcctcggcgaggagatcgacctcgagatcggcccgggcgacgacccctccttccccggcgcggccctcgtcggcgtcacccccggcgcgcacgaccccgcggacgaccacaagagcctcctcatcccgtgctcgcagcccgtcgccgaggggcagccgcagccgacgccgccgcaggtggaggagcacgacgggctgctacggctgccggggcaaaccaagaagaagaagaaggtggtgaagaaatggagggaggagtgggcggacacctacaagtgggcctacgtcgccgtgcacgacaacaccagcaggatcttctgcaccgtgtgcaaggagtacgggcggaagcaccgccggaatccctacgggaacgaggggagcaggaacatgcagatgagcgcgctggaggagcacaacaacagcttgctgcacaaggaggcgctgcggttgcagacggcgtccaaggagaacgcgcagccccctgagatcgagaggccggtatatgtcaaaggttggtgttgttgcctcaagccctgtgattatgctgcgagttcgcctgtggtcttctataagaataggggatgtgtaccaaatccgtgcttacaattagtactatggtggtgtttagttgtttggcaaaatgtcattttactgattttaacagtgaaaaatgtactgggtgaaatagataacatgacttttgatgcatagtttgggcatatgttgttacatttatctatgactttgatattcgtcacttcatcccatcctgacagttcatggaggtaaagtgtgtctgtgctccgtgcaagaaaaggaatatagtgtaaataataagttgaagcaatttccagttctccactaaactgaagatgcttggcattcccttgcattttaactcctttatcagcgaatgcactccattttctattaatttggaagaagttaaccatatatttataaaagtacttaccttaactttcaaggttatatctgaattgtggcatctacatttttcagctctgtcgaaaactgcagcctctatacttgaatctatcctaaagaaggaccctcatgaagctgagtttatacagtctatccaagaggtggttcattccttggaaccagttttggtgaagaactcccagtaactctccttccctcctcccctccctgagaaacagtttgcctaagactcaagtataacatgatttctgattgtgatgtttcagacatgtccaaattttggagcgtttgttggaacctgagagatgctttatcttcagagtgccatgggttgatgatagaggtgaagcacatgtaaatcgaggcttccgtgtgcagttcagtcaagcgttaggtccatgcagaggtggtcttcgtttccacccttccatgactttgagcgtagcaaaatttctagcttttgagcaggtaatatattacttggttcaaatatattatcatgcaaatagtctgctgctgctacctgtcttttcatcatgtatgtcatttgtgctttttgtatgaaatttcagtttttctgtttccgcattacactccatttgattaaatgaataccatggtggatgccatgcacacaaacacgactcaagaactgagaaatgcaactacctgaacctaagtagatactgtcatattgtaatgtttttttttttactttccatcattccacattggattcctaatccagtggcatgattttactcatgatagccttacattttttttcttttgatacttgggggatctgcactgtttcttttttttgtctgtgaacttctgcccaaaattgtatctttttttttccaatagaacacaatcaaacaaagttatataaaattaggatgcttgctgtgctatatgtttatttaggatttcattattgagcactataattgaaagtagagtgctttaaattgatgtggaaattagaaaccggcatgaagcttttataaagcattataaacttatttcctttgatacagactctaaaaaatgctttgtcacaatataaacttggaggagctgctggagggagtgattttgatcccaagggtaaaagtgaaagtgaggtatttgtgtcacattttgtttcctttggaaaatagtattttactgcacataaatctgaaaatgttctatttcagataatgcgtttttgtcaaagtttcatggatgagctgtatagatatttggggcctgatcaggtattcctatcagatataatatcattttttttagattatgacatttttctatattagaaaaatggaatcaaattgttttgatctaaatcagatgattttgcttaaaatcttactgcaggattttcctgctgaagatgttggtgtgggtccaagagaaatgggttatctttttgggcagtatagacgcctttctggtcattttcaggtataatagttgttctgcaatgatatgttattcgaaatactgtttgtcatcttctgccgttgccttttattttgggtattctgattctgactaattgaaaactaaggaccattaaccaaagggaaattagtgactaaccttccctagttagagagcattataacattatcttaaacttcttttcatgttcatcatgacgtcctactgggtagtgctatattatcatgctgtgcaactgtggaatcaaatattagttccatgatatctgaatgtagtcaagttcagatcatactacagggattgaggaaccaaaaggtggtattgctcaatagtttgttatagcttggttcatctgtcctgtatctggacatttctcttcattcttggtaaaatacaccatttagtagttcgggaagcgtgcgcacagagaacgagagaaatcttctcttgttcaccagctgcagaacgcagccctactttaaggctattggtttgcagtttgctttatatttttttgtcagtcttttctcttattctgtagatttcattgctatgcttgtgcaggggaattttacagggcctaaaatcttctggtctggttctagtttccgaacagaagctactggatacggactggtaaagtggtgccttaacatttcctgtgagcagaaactattgtatatcatgttgcttgctactatcattctttcacaacttaccctttttgctgcatatgtcaactagacaattgttcctgttgaaaagagtaattttataacctgttgcaggtattctttgcacgtgtagtgcttgctgatatgaacaaggaactcaaaggattaaggttttaacatagatctatttagtttatttgtatatagttttgtaaccatttgggacttcctaatgtgcatggcttctgcagatgtgtgataagtggttctggaaagatagcaatgcatgtattggaaaagcttctgtcatgtgaagctattcctgttacagtttcaggtataccatatacagattgaaaccttaacatggattatcttgctaggaaataacataaggtagtatgataggcaggagcatgacctagtttactaccatgatttcaccaattaattttgtacatttatcatgactaaaccttatgggtttgtctgcccccaagatgcaatgattcacatcttattactgctttttacttaacctagctcatgtttgatttcccagaattctaatggccttatttatttaatgacatatataatggtttctgttcttgttcctgtaacattacccttggtttttcccttaccggttgtcacattgtaacccaatcctaaataagaataattcgtctacttgtacaagaataattcgtctacttgtacaagcaattctaatcaacgagagctatcataaattatttttctcttactggctgtcacatcgtaaaccaatcctaataagaataatttggtctacttgtacaatggcaattctaatcaatgaaaactatcataaattattgcagattcgaagggttatttgttagacacggaagggtttgattacatgaaatattcagttctaaggaacatcaaggctcagcaaaggagcctcaagtgggtagatgccttaacttatccttagttcataaaggtttagattttgacatactattccatttaaccaaacagggaatacttgaaatcatatccaaatgccaaatatatagatgatgcaaagccctggagtgagaagtgtgacgttgcattcccttgtgcatcacaaaatgagattgaccaggcggaggctcttgcaataattaactctggctgccgtgttcttatagaatgtacggaattttgaatttgtccttttgatcacttcgttccatatcatctactgatttatttttggtcctactgaaggttcaaatatgccttgcactgctcaagcagttgatatcctacgaacagcaaaagtagttgttgctcccgcaaaggcaactgccgctggtggggtaatgcaaatgttcttatcaatccttctgtggtcaaaactacatgatcctagatgaattgtgttgctcgtttttctgctgttataaattaatttgggcgcactgctttctaagttagattgatgtatattccagctgagcttggtcatggtccctcttttgatcatgcctttgtttctctcgtatgacaggtagcagttggagaactcgaactgaaccctgagttcagtttgatgcagtggtcagtggaggattttgagaacaaaatacaggtataatctgctgctcctgcttgttggcaagctactcgtatttactaactagaagacctgctgaaagtcttctttttaaaaaaataaacaggatgcggtgaaacaaacatatgacagatctatcaaagctgctcaagattatggaatcatgaaagagaacccagagttagttttcttcttgtgctctgaggatgtcttcctttgtttccgcctggtttcaacccagaagctgatcgatctctctatgcaggtcgttggtgcatggtgcaaacatatgtgcgtttcttaatattgcacaagccatgactgatcaaggatgtgtctagtgaggctgctcaataagcagaaatggcgattgttgcagtcctgcaggcatgatctcacgggagcataggtttttgtttatacatgccctcaaatcaatttagtgttgaaagctttcccctggtaggaagcgaagcttgggcccatcgtagaacaatatagaagagccctttgttgttgtatgtagtctcgtagatcaccgatgtattatccattctttcttttttttttctttttgaactatgtattgcccactcttaccaacatcaatgccaatgggaggaggaaatagaagc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0558200, RefSeq:Os01g0558200