Os01g0850800

From RiceWiki
Revision as of 19:02, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0850800

Description

Cupredoxin domain containing protein

Version

NM_001051351.2 GI:297597967 GeneID:4324803

Length

2387 bp

Definition

Oryza sativa Japonica Group Os01g0850800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:38390178..38392564

Sequence Coding Region

38390178..38390264,38390457..38390608,38390812..38391059,38391173..38391295,38391385..38392305
,38392431..38392564

Expression

GEO Profiles:Os01g0850800

Genome Context

<gbrowseImage1> name=NC_008394:38390178..38392564 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:38390178..38392564 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcatcggcagccatgctcgtgccgctcgtgctggttctctgcacggcagcagcaagcgcggccgtcgtggagcacaccttcaaggtgggcggtacgaagatcacccagctatgcatgaacagtgtgatctacacggccaaccagcagctgccgggaccgaccatagaggttaccgaaggcgatacactggtcgtccacgccgtgaacgactcaccgtaccctctgtcactccattggcacggtgtataccagctccggagtggttggaatgacggggccaacaagatcacgcaatgccccatccagccttctggcaatttcacgtaccggttcaacatcaccggccaggaggggacgctgtggtggcacgcgcactcctcgctcctccgagcaaccatctacggcgcgctcatcataaaacccaggaatgggccgagtgggtacccgttccctgaaccatatgaagagatcccgatcctactaggtgagtggtggaacagaaatgtggacgatgtggagaatgatgggtacctgaccggcttagggcctcagatttcagatgcgctcaccatcaacggcatgccaggtgaccagaatcgctgcaaaggttccgccatgtatgaagtggaggtggagtacggcaagacttgcctcctgcgcatcatcaacgctgcagtcaatgtggagctcttcttcaaggtggccggccacaccttcaccgtggtcgccgccgacgccagctacaccaaaccatacgccacggacgtcatcgtcatcgcgccgggccagacggtggacgccctcatgaacaccacagcatcgcccggtcggtactacatggcggcacacgtcttcgacagcaagaccgtcgccgtgccgttcgaccagtccaccgccacgggcatcgtgaagtacaagggcgtgccgaattacgccccggcggccatgccgtccctgccgccccacgacgacgtcgtcaccgccggcagattctactggtcactcaccggcctcgcgcgcccgagcgacccgggcgtgccaacaaccgtcgaccacaacatggtggtgacgttcgggctggaccaggcgccgtgcgcgcccaaccagacgaagtgcagcgggttcgcgctcgtggcggccatgaacaggaactcgttccagttcccggatcagaaggtgtcgctactcgaggcgctctacaagggcgtaccgggcgtgtactccgaggacttcccggacttcccgccgccgatgcaggggttcaggaaggcgacggcggtgaagaaagtgaagtacaacgacgtggtggaggtggtgctgcagagcgagcagtacagtagcacgctcggcaccgagaaccacccgatccacctgcacgggttcgacttctacctgctggcgcaggggctcggccggttcaacccgtcgatgaagagcaagtacaacctcgtggacccgcaggtgcgcaacaccgtcgccgtgccggccggcggctgggcggtgatccggttcatggcgaacaacccaggtatgtggttcatgcactgtcacttggacgcgcacctgccgttggggctggccatggttttcgaggtgctgaacggaccagccccgaatctgctccctccacctcctgttgaccatccaaaatgccatggatga</cdnaseq>

Protein Sequence

<aaseq>MASAAMLVPLVLVLCTAAASAAVVEHTFKVGGTKITQLCMNSVI YTANQQLPGPTIEVTEGDTLVVHAVNDSPYPLSLHWHGVYQLRSGWNDGANKITQCPI QPSGNFTYRFNITGQEGTLWWHAHSSLLRATIYGALIIKPRNGPSGYPFPEPYEEIPI LLGEWWNRNVDDVENDGYLTGLGPQISDALTINGMPGDQNRCKGSAMYEVEVEYGKTC LLRIINAAVNVELFFKVAGHTFTVVAADASYTKPYATDVIVIAPGQTVDALMNTTASP GRYYMAAHVFDSKTVAVPFDQSTATGIVKYKGVPNYAPAAMPSLPPHDDVVTAGRFYW SLTGLARPSDPGVPTTVDHNMVVTFGLDQAPCAPNQTKCSGFALVAAMNRNSFQFPDQ KVSLLEALYKGVPGVYSEDFPDFPPPMQGFRKATAVKKVKYNDVVEVVLQSEQYSSTL GTENHPIHLHGFDFYLLAQGLGRFNPSMKSKYNLVDPQVRNTVAVPAGGWAVIRFMAN NPGMWFMHCHLDAHLPLGLAMVFEVLNGPAPNLLPPPPVDHPKCHG</aaseq>

Gene Sequence

<dnaseqindica>1..87#280..431#635..882#996..1118#1208..2128#2254..2387#atggcatcggcagccatgctcgtgccgctcgtgctggttctctgcacggcagcagcaagcgcggccgtcgtggagcacaccttcaaggtaaaaattcctgcccagaaacttgtttgtgtgcatgtttgctctcttcgtatatatccagcgttatgtactgtactctggctttcgcgcgcgtcgctccacctgtggctgtggtgcttgttcgttttggagtggagtgttgcaagggtccacggctatgtctttctaagttctgcgtatacctgaattcaggtgggcggtacgaagatcacccagctatgcatgaacagtgtgatctacacggccaaccagcagctgccgggaccgaccatagaggttaccgaaggcgatacactggtcgtccacgccgtgaacgactcaccgtaccctctgtcactccattggtaagcgctttgacattctctgaactttcctttgccaaacagggggcgtgatctgaatacaacagactgccaatgtttgtgggcctcacatatccagcccacacagcccatagtccctcaatcattctgggcttccggcctaccacacctggacaaaccggcccaaaactcatgtgtttcctctccggtggtgattgatgcaggcacggtgtataccagctccggagtggttggaatgacggggccaacaagatcacgcaatgccccatccagccttctggcaatttcacgtaccggttcaacatcaccggccaggaggggacgctgtggtggcacgcgcactcctcgctcctccgagcaaccatctacggcgcgctcatcataaaacccaggaatgggccgagtgggtacccgttccctgaaccatatgaagagatcccgatcctactaggtacgcaagaactagtaccgtatacacgatggagagatggtggcaatgtggcatggttcatttttgctgtgtggctcgtcacgatattacgtaattgttgttttctctggcaggtgagtggtggaacagaaatgtggacgatgtggagaatgatgggtacctgaccggcttagggcctcagatttcagatgcgctcaccatcaacggcatgccaggtgaccagaatcgctgcaaaggtacagctccaccagcacgtattagatagtttacctgtgaccaacattttcccgacctgcattttttttgtgtgtgtgcaacacattaggttccgccatgtatgaagtggaggtggagtacggcaagacttgcctcctgcgcatcatcaacgctgcagtcaatgtggagctcttcttcaaggtggccggccacaccttcaccgtggtcgccgccgacgccagctacaccaaaccatacgccacggacgtcatcgtcatcgcgccgggccagacggtggacgccctcatgaacaccacagcatcgcccggtcggtactacatggcggcacacgtcttcgacagcaagaccgtcgccgtgccgttcgaccagtccaccgccacgggcatcgtgaagtacaagggcgtgccgaattacgccccggcggccatgccgtccctgccgccccacgacgacgtcgtcaccgccggcagattctactggtcactcaccggcctcgcgcgcccgagcgacccgggcgtgccaacaaccgtcgaccacaacatggtggtgacgttcgggctggaccaggcgccgtgcgcgcccaaccagacgaagtgcagcgggttcgcgctcgtggcggccatgaacaggaactcgttccagttcccggatcagaaggtgtcgctactcgaggcgctctacaagggcgtaccgggcgtgtactccgaggacttcccggacttcccgccgccgatgcaggggttcaggaaggcgacggcggtgaagaaagtgaagtacaacgacgtggtggaggtggtgctgcagagcgagcagtacagtagcacgctcggcaccgagaaccacccgatccacctgcacgggttcgacttctacctgctggcgcaggggctcggccggttcaacccgtcgatgaagagcaagtacaacctcgtggacccgcaggtgcgcaacaccgtcgccgtgccggccggcggctgggcggtgatccggttcatggcgaacaacccaggtgagcccgcggcgcttaatttatttttaccttacatgatttggtgcaaccgtgcaagtgactgtcgagttgttgagttgcaactgatttctgattggttccatgcatcggggatgaaactgtaggtatgtggttcatgcactgtcacttggacgcgcacctgccgttggggctggccatggttttcgaggtgctgaacggaccagccccgaatctgctccctccacctcctgttgaccatccaaaatgccatggatga</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0850800, RefSeq:Os01g0850800