BGIOSGA029464

From RiceWiki
Revision as of 17:18, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA029464

Description

cDNA clone:001-044-E12, full insert sequencecDNA

Definition

Oryza sativa Indica Group BGIOSGA029464, complete gene.

LocusTag

P0470A03.28

Ensembl Transcript ID

BGIOSGA029464-TA

Ensembl Protein ID

BGIOSGA029464-PA

Length

4318

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:18445629..18449946

Sequence Coding Region

18449866..18449946,18449678..18449773,18449520..18449594,18449241..18449371,18448652..18448706
,18448021..18448176,18447532..18447600,18447338..18447445,18446647..18446715
,18446063..18446117,18445629..18445825

Genome Context

<gbrowseImage1> name=IndicaChromosome09:18445629..18449946 source=RiceIndica09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome09:18445629..18449946 source=RiceIndica09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCGAGTGCGGCGGTGAATGGATTGGCTGGTGCCGGTGGTGGCATCATCGCCCAGATCATCACCTACCCCCTCCAGACTGTGAACACCCGGCAGCAGACAGAGAGGTCAGCAAAAAAGAAGAAGGCCAATGGCGCAGCCATCGCCAATACTTCCACCCTCTTCCAGATGCTCCAGCTGTTCCAAACAGAAGGATGGGGAGGGTTGTATAGCGGCCTTAAACCCTCTCTTATTGGCACCGCTGCTTCACAGGGAATCTATTACTACTTTTACCAAATTCTCAAAAACAAGGTGGAAGATCTAGCAGTTGCTCGCGGTAAGAAGGGTCTAGGGGATGGTACTGTTGGGATGTTCTCCTGGCTTGGTATTGCAGCTGTTGCTGGGTCAATCAATGTTCTTCTTACCAATCCAATATGGGTTCTCGTGACTCGTATGCAGACACATACGCAAGCAGAAAAGAAGATCATGGAGTCTAAAAAGGAGCTTTTGCTGAAGGATGTTGCTAGGGCCAATTCAATAGAGGTCTCAATTCTTAAGGACAGGTTGTATAAACTTGATTCTGAAAAGCCTCGTCCATATGGGACAATTCAAGCGGTCCGGGAGGTCTACCGTGAATCAGGCATAAGAGGATTCTGGAAAGGACTTATTCCAACACTAATTATGGTATGTAATCCATCAATTCAATTTATGATCTATGAAACATTGGCAAAGCGTCTCCGGTCAAAGAGATCTGGAAAGGAACTCCCAAAAAAGAACCTTACTGCTATGGAGGTATTCTTATTAGGTGCAATAGCAAAGCTCGGAGCTACTGTTGTGACATACCCATTGCTAGTGGTTAAGTCTAGGTTGCAAGCAAAACAAGAAATTGGCAGGAATGTGATGTCCAGATACACAGGTACGATTGACGCGATCATAAAGATGATCCGGTATGAAGGATTGCACGGGTTTTACAAAGGAATGGGTACGAAGATTGTACAGAGCGTCTTTGCCGCCTCAGTTCTTTTTATGGTAAAAGAAGAGTTGGTAAAATTCGTAGTTATGTTAATTGCTAGGAGTAGGACTGTGCTCGGTCCTAGCTCTAAGAAACGATAG</cdnaseq>

Protein Sequence

<aaseq>MSSAAVNGLAGAGGGIIAQIITYPLQTVNTRQQTERSAKKKKANGAAIANTSTLFQMLQLFQTEGWGGLYSGLKPSLIGTAASQGIYYYFYQILKNKVEDLAVARGKKGLGDGTVGMFSWLGIAAVAGSINVLLTNPIWVLVTRMQTHTQAEKKIMESKKELLLKDVARANSIEVSILKDRLYKLDSEKPRPYGTIQAVREVYRESGIRGFWKGLIPTLIMVCNPSIQFMIYETLAKRLRSKRSGKELPKKNLTAMEVFLLGAIAKLGATVVTYPLLVVKSRLQAKQEIGRNVMSRYTGTIDAIIKMIRYEGLHGFYKGMGTKIVQSVFAASVLFMVKEELVKFVVMLIARSRTVLGPSSKKR</aaseq>

Gene Sequence

<dnaseqindica>1..81#174..269#353..427#576..706#1241..1295#1771..1926#2347..2415#2502..2609#3232..3300#3830..3884#4122..4318#ATGTCGAGTGCGGCGGTGAATGGATTGGCTGGTGCCGGTGGTGGCATCATCGCCCAGATCATCACCTACCCCCTCCAGACTGTACAATCATTCTCCCCCTACCATCTTATGTAGCTCTGCTGTTCCTTTATAGTCTGCTCAATCCTTCCTCATCATGATGATGGCCTGAGCAGGTGAACACCCGGCAGCAGACAGAGAGGTCAGCAAAAAAGAAGAAGGCCAATGGCGCAGCCATCGCCAATACTTCCACCCTCTTCCAGATGCTCCAGGTAGTTCCTCCTGGACTTTTAGTTTATTTGGAATTGCCTCCTCTAATGTTATAATGGCCAAGTGTGGAATCGAGTTACTGCAGCTGTTCCAAACAGAAGGATGGGGAGGGTTGTATAGCGGCCTTAAACCCTCTCTTATTGGCACCGCTGCTTCACAGGTAAATTCCACTGGTTTAGTAATTTGGTGCTACTCACATCATTTTTTTCTGTAACAATTGTATTTCCCTGTTTGTCAATGTGATGATACTTGGATGAGTCCGTACGGTGGTATTCAGGATTTATGGTTCATCCTGTTTGTGGTTGTAGGGAATCTATTACTACTTTTACCAAATTCTCAAAAACAAGGTGGAAGATCTAGCAGTTGCTCGCGGTAAGAAGGGTCTAGGGGATGGTACTGTTGGGATGTTCTCCTGGCTTGGTATTGCAGCTGTTGCTGGGTAAGCCATCTACTCTCGCACTGAAATTGCTAAACATCATTTATATGTCAAGTCAACCTGGAGCCCCAACATTCACCCAAAACAAATCGAATGCTTGTCTCCATTTAATGCTGGAATGAACAATTCAGTCTGGACAACCGGGACATTATCAGTTGGTAGTGGTCCAATAGGGCATCTCCATAGTATCCTGTCAAACGAATTGTAATAGAGTTCTGATGAATTTGACTGAGCTTGCAAAGGCTAACAGAGCATTGAAACCTTAAATTGTTTCGGAAAGGGAGATAAGAAAATGTAATTCATGGTAATGTATGGTTGCCATGATTGTTCATATGGCCTTGCCTCCTTAGAACTGACTGAAGGCGGTGATTAACTTTGAATTTGAAGCGTGCAATCCTTTCCAGTTAAGATGGTTTTTGTTCTGGAAAACCATAGCGCTGTGAAATAGAGTCACCAGTATGGCGAAGATTGCACTTTGAATGTAATATTGCAACATTGATCCTCAGGCATTCTGATGGACACTTTTCTCTGCTGCAGGTCAATCAATGTTCTTCTTACCAATCCAATATGGGTTCTCGTGACTCGTATGCAGGTAAATTTTGTTTAACAGTCTATATTTTAAAATGACATATAACACCAAAAAAGATCATCGATGATGGGGTTAATGAGTTACTATACTGTATGTCCTGTCAAAATTCAAAAAAAGAGAAGAAATCTTCTAATATGTTAGAATATTAACATTGGTATTGCACCCATTGAATTTAATTACTGTTGCTTTTGCCCCCACTTTCTGGTAGCATACTTACCTTCTTTGTACCTGCCTGACTCCAAGCATTAGCTTTGTTTTTATGATGACAATGATCCATGAAACTTCAGGAGGCGCCGAATCACAAGGATTATTGGTCCATGACATCCTTTGTGAAATTAGTTGGAAGACCATGGTCGGTTGTAACCAAGCTTGTATTAACTATGCAACTACTATTAAATTGGAACATTCTAATATTATTCAAAATATCTGTAAGTTTTTTTATCATCAGTTTGGAAATTAACTTTATTCCATTTTTCAGACACATACGCAAGCAGAAAAGAAGATCATGGAGTCTAAAAAGGAGCTTTTGCTGAAGGATGTTGCTAGGGCCAATTCAATAGAGGTCTCAATTCTTAAGGACAGGTTGTATAAACTTGATTCTGAAAAGCCTCGTCCATATGGGACAATTCAAGCGGTGAGTAATTGAGCACACTCACATTCCTTAAGTTGCTATACATTATTTTGTATATATAATCCATTTCTTAACAATTATGCAGCACATAAAATAAGATAGTACGTGAATCCCCCACACCCAACCCTGCCCCTCTCTATTTTTTGTTGAGAGTTGTGACCACATCTAGATATTTAGATAGATTTCTCACTTGTACTATTTAGATAGTACAAGAATTCTTGATTTTTTTATCGAATTGCTTTCTTCCTTCTAGGACTAATTGCTGCACTTACAGATTTTAAAATTCTGTTTGCAAAAAACTACAATGAATAGTAGCTGCAATTGCATTTCAAGTTTTGGGCTCTACAAACTTGCTTTTAACTAATCAAATGTATTTGTCACTGGTCAGACATGATTTTTCTTACTTTTATCAGTAGTATGTAGGTCCGGGAGGTCTACCGTGAATCAGGCATAAGAGGATTCTGGAAAGGACTTATTCCAACACTAATTATGGTTAGTTTATGTTTCTCAAAACATTTGAGCTGAAATTAGTGGTTATGTAAGAGTGACTATAGAGAATGAACCATTTAAATTGTTAGGTATGTAATCCATCAATTCAATTTATGATCTATGAAACATTGGCAAAGCGTCTCCGGTCAAAGAGATCTGGAAAGGAACTCCCAAAAAAGAACCTTACTGCTATGGAGGTATGGATTTGTTTTTTCGATTTAGCTCTGCATTAGAAATTTGCATGTATCTGTGTCTGTGGATATATGAGTTTTTAACAGTTAGATGGCATCAGCTATTTGCATGTGCTGCCTTCCTAGGAACTTCATGTTTCTTTTTTATTTCTAGAAATTTGTATTGTATCTTTCAATCATATAAACCTGTTCACCGTTTATCCGCTTTGATGCAAATAAAGCTACATTGATCATGATCAATAATATTTGGTTCAATGTAAAAAGAATCATCGTTGGGATTGCTATAATTACCTTCAAATCATTCGTCTATAATTCTTGTACTCCATAAATTATTATATTTAAAGATGCATGCTACGGTTATTTGAGCAAACCAGATAATTTGGCCACATAAAGCGCCAGGACAGAGTAATTTCATACTACAATTAGCTATGCAGTCAATTTATGATTCTATGAATGCACTAAAGAATATTCATCATTATTACTTCCCTTTGTTTAATTATGTCCATAGCACAGACCATATATTTGTTTCTTTATTCTTCAGATCCAGAGCTAAATAACATCTTAAGCTCTTTGAAATTTCCTTTGATGCATTTATATGTCCTATCCTTACCATTTTCTCTTTGAGCAGGTATTCTTATTAGGTGCAATAGCAAAGCTCGGAGCTACTGTTGTGACATACCCATTGCTAGTGGTTAAGGTAAACTTAATATTATATACATGTAAATCATCTTATCTTGTGCAAAGTGTTAAAACTGATGCATTTCTCACTTGTACATCTGTTTAAGCTCAATTTTTTTAAGAAATGAGGAATTACTGGCTTGTCAGATCAGCCAGTGATGGGCCACTCAGGATTGCCAAAATAGGCCTGAATAGAAACCCGGAAGTCCACATCGATGCTAGAGATTTCTTTTCCATTTCTCTACTCTGTTTCTCTGATGTTGTTAAAACAAATGCTTTCAGCAAAACAACTACAGTACTAATAGCTGTCCTGCATTGTTGCATACAACAACCCCATGAATATGCTGCACCACATTTTTGCTCTCCTTCAGAATATAATTTAATCTTGTGAGACTTTACTCAACAACGACAATATCTAGACCTGCCACGGGTGCAAGTAGTTGCAGGCAATGCCAGTCTATCTGGGTTGAGTGTATGAATGGTTTACATTATCAAAATAGTGTCATGTTTGTTTGTGCTATCCTGATTGTTGTATTGAACTAATGCAGTCTAGGTTGCAAGCAAAACAAGAAATTGGCAGGAATGTGATGTCCAGATACACAGGTAAATCATTTCCTACCATTTTAACTTACTAGCAGAAAACACTGTTTCATTTCCATATTTGTTGGGATCATTGTTTTTCCGCGCTGCTCCTATGTCTTGTGTGTCAGACATTTAGCTATACCTCTTCCGTTATAAAATGTAGCTACTTTTAGCTACGGATATGGATATTTTGGGACGGAGGGAATATTTGCTACTCATTGTGCAAGTAATATAATGCTGACTGCCTGTTTTCTCCAGGTACGATTGACGCGATCATAAAGATGATCCGGTATGAAGGATTGCACGGGTTTTACAAAGGAATGGGTACGAAGATTGTACAGAGCGTCTTTGCCGCCTCAGTTCTTTTTATGGTAAAAGAAGAGTTGGTAAAATTCGTAGTTATGTTAATTGCTAGGAGTAGGACTGTGCTCGGTCCTAGCTCTAAGAAACGATAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA029464