BGIOSGA033378

From RiceWiki
Revision as of 17:38, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA033378

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA033378, complete gene.

LocusTag

OsI_34502

Ensembl Transcript ID

BGIOSGA033378-TA

Ensembl Protein ID

BGIOSGA033378-PA

Length

3575

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:20086045..20089619

Sequence Coding Region

20086045..20086058,20086155..20086734,20086895..20087905,20088245..20088334,20088633..20088720
,20088806..20089053,20089233..20089619

Genome Context

<gbrowseImage1> name=IndicaChromosome10:20086045..20089619 source=RiceIndica10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome10:20086045..20089619 source=RiceIndica10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGTACTAATTTGTTCTGAAAGTTCTGATGACAAAAACAAGTGCGGAGATGAATTGATAAACTATATTTTATCATGGTCATGGACAACTTGTATTGAGTCCAATTTTGAAAACCCCCAAGAATCAGCTGCATCATCATATGCAAAATCGCTGTTAGAACCACTTGTCGAGGAAACGGTAGCAGCAGTTCAGTCAGCTCTCCAGAAGCTGTGTTTTGCACCTCAATTCAAGATAATTGATATCCTTCCTGCTGCTGGAGTGAATATATCATTCTTGGATATAGATCTTCAGGAGGTTATTACTCACAACACGGAGAGGGGTGATATCTTTTTACTGTGCACAGAACTTCCTAGGGACTCTAGTCAGCTATGCAATGATGAAGCAGTACTTGCTATGGCAACTTGCTCAAATCTTTATGACACATTTCAGAGAAGTTTCAATGTGAAGACTCATCAGAAAGTTAAGAGACAAAAGTTTAACCATGCTCTGTTCTTGTGCAATATCTTGATGAATATTCAGATCTGGGAATCACTGAATGCGGTGATTCTATATGACTGCCCGATAATCAATGATCTACTGGCGCCACCATCCATGATTACTCTAGATGAGGTGCAGTTGGAAGCTGCCAAAGCAATTTATTCAGCTGCACGGTGTAAACATAGTAGAAGCATCCTTGTTATATCTGGAGCCCATGGAACAGGCAAAACAAAAATTGTTTTCTCTGCAGTGGCGTCACTTTTGTCAGTAAGTGAAAAAGTTATTGTATGTGTCCCCAATGCTCAATCGTTTTCAGCAATGTGTTCTGATTTTGTTGAAATGGCTGAGTCTCACATGGATGAGGAATTGGGAATTTGCTTGGGAGACAAATTGGTACTATCCAACGAGACCGGGCTAGAAGATAATGTTCAACAGCTTACAATCATTACAAGAGTCAAAGAAGTGCTGCCTTTGATGATATGGCATGATATGATGAAAGCACTAAGGAAATCATTGGCAGCATTTAAAGAGAAATACGTTGCAGAATTTAAAGAGAAATATGTTGCTTCAGCAAAACATAATTGTCAGCCATCAGCCAAAAAGTTGCTGACTTCATTATTTTTCGAAAAGGCAGGTTTTCTGTTGATATGCCTTGCAACCTTTAGGAAACATTTCCCAAAAAATATGTTTTCTGAACAAGTAAGCAAGAGAATAAAATCTCTCATCAAGTGTGTCTCCAAACTTGAGAATCTCTTGAAAGACAGGAATCTCAAGGAATATGATGTACATGTTGCTTTTGGGATATTATCAGGAAAAAGGGAAACAATTTCTGTGCTTGCCAAAGATTTACGCCAAACAAAGAATCACTGTGTTACTGCTTTGGATGACCTTCTCACTAGACTTGACCTGCCGTTCAACAAAGATTGCATTTGGCTCAGGAATTACTTCATTAGCAATGCAAAATGTGTGCTATGCACTCCATTATCAACATTTGATCTTCAGCTTTCAGCTGGTTCTATCGAGACACTTATTGTTGACAATGCCGATCAAATAAGAGATTATGATTTTATTCTTCCTTTAACTCTCCGCGATGTCAAAAATATTGTATTAACAGGAGATCCAAGTAAGAGACATGAGGCAGATGGGCAAAATACCCTTTCCGAAGCTTTAAATGACAAGATAAAGGCTGAAGAGCTGTCCCTTACAATTGGTTCACCGAAACAACTATATTCTGAGTTCACCTGGCTCCATCGTCCTTACAATCAGAAGTACATCTTACCTCAGTTGCGCGACCAGAAAGGACATCCTCACTGTACTGTACATGCTAGTTTAGCGGCTTTGGAATTCAAGTACAAGTATAAAGCCGCATCAGAAAACCCTCCTCATGATTTCAGCTCCAAATTCTGTACAAAGCATATGTTGAATGTATATGCTGCTAAGTACGGCGAACTAGGAAGTGAGCGTGAAAGTACAAGGGGTAGCAAACGCCTTTCAAATGTCTTGGATATATTGCAAAATGATGGAGCCAAGAGAGAAGCAATGATGGGCAAACAGGTCTATAAAATCTCTTCATATGCGTGTACATACAAAATTGGAAAAGATACTGAGTGTCTTCAAGAAACCATCGATCATTTGAAGATAGGCGACATTTCAATTGGATCATTTAAAGTTTCCGAAAATCTCAGGTTTTTTAAGCCCGGAGAAGTGTACATTTACAACCCAGAAAAGCCAGTACTCACTCCAACAGCAAATCAGCCAAGTGCCCACTGCGTGCTGGTAATAGGAGGTGGAGGCTGCCCAAGCGACAGTACTGCGGAACCTGTCTTAGCTTGCAACATGCAATTCATGATACAAAATAGCTATGGCAAAGGTTTCGGGGAACTGGGAATTGGTAGAGTACGCGGAGATTCGTTCAGTACCATGCATCGGATCAGTTTGTAG</cdnaseq>

Protein Sequence

<aaseq>MVLICSESSDDKNKCGDELINYILSWSWTTCIESNFENPQESAASSYAKSLLEPLVEETVAAVQSALQKLCFAPQFKIIDILPAAGVNISFLDIDLQEVITHNTERGDIFLLCTELPRDSSQLCNDEAVLAMATCSNLYDTFQRSFNVKTHQKVKRQKFNHALFLCNILMNIQIWESLNAVILYDCPIINDLLAPPSMITLDEVQLEAAKAIYSAARCKHSRSILVISGAHGTGKTKIVFSAVASLLSVSEKVIVCVPNAQSFSAMCSDFVEMAESHMDEELGICLGDKLVLSNETGLEDNVQQLTIITRVKEVLPLMIWHDMMKALRKSLAAFKEKYVAEFKEKYVASAKHNCQPSAKKLLTSLFFEKAGFLLICLATFRKHFPKNMFSEQVSKRIKSLIKCVSKLENLLKDRNLKEYDVHVAFGILSGKRETISVLAKDLRQTKNHCVTALDDLLTRLDLPFNKDCIWLRNYFISNAKCVLCTPLSTFDLQLSAGSIETLIVDNADQIRDYDFILPLTLRDVKNIVLTGDPSKRHEADGQNTLSEALNDKIKAEELSLTIGSPKQLYSEFTWLHRPYNQKYILPQLRDQKGHPHCTVHASLAALEFKYKYKAASENPPHDFSSKFCTKHMLNVYAAKYGELGSERESTRGSKRLSNVLDILQNDGAKREAMMGKQVYKISSYACTYKIGKDTECLQETIDHLKIGDISIGSFKVSENLRFFKPGEVYIYNPEKPVLTPTANQPSAHCVLVIGGGGCPSDSTAEPVLACNMQFMIQNSYGKGFGELGIGRVRGDSFSTMHRISL</aaseq>

Gene Sequence

<dnaseqindica>1..14#111..690#851..1861#2201..2290#2589..2676#2762..3009#3189..3575#ATGGTACTAATTTGGTAAGCATGTGTAGTAAACCTTATTGAGATTTAAATATCATGTGTGCCTTCAGTCTTCTATATTTCCTTACATTTTCCTTTTTATGCATACAACAGTTCTGAAAGTTCTGATGACAAAAACAAGTGCGGAGATGAATTGATAAACTATATTTTATCATGGTCATGGACAACTTGTATTGAGTCCAATTTTGAAAACCCCCAAGAATCAGCTGCATCATCATATGCAAAATCGCTGTTAGAACCACTTGTCGAGGAAACGGTAGCAGCAGTTCAGTCAGCTCTCCAGAAGCTGTGTTTTGCACCTCAATTCAAGATAATTGATATCCTTCCTGCTGCTGGAGTGAATATATCATTCTTGGATATAGATCTTCAGGAGGTTATTACTCACAACACGGAGAGGGGTGATATCTTTTTACTGTGCACAGAACTTCCTAGGGACTCTAGTCAGCTATGCAATGATGAAGCAGTACTTGCTATGGCAACTTGCTCAAATCTTTATGACACATTTCAGAGAAGTTTCAATGTGAAGACTCATCAGAAAGTTAAGAGACAAAAGTTTAACCATGCTCTGTTCTTGTGCAATATCTTGATGAATATTCAGATCTGGGAATCACTGAATGCGGTGATTCTATATGACTGCCCGATAATCAATGATCTACTGGCGCCACCATCCATGGTAAAAATTCTAGATCATGCTTACAATCCTTCGCATCATTTTCCAGTTCTGTAAGTTCCTTTTTATTCTTCACTACATTACTTAACCTCTGTTCAATTGTCCATGCCCAGGTTGTGACATGCTGCAATGAGGAGTTGGTTGATGTGTAATGTCTCAAAAGATTACTCTAGATGAGGTGCAGTTGGAAGCTGCCAAAGCAATTTATTCAGCTGCACGGTGTAAACATAGTAGAAGCATCCTTGTTATATCTGGAGCCCATGGAACAGGCAAAACAAAAATTGTTTTCTCTGCAGTGGCGTCACTTTTGTCAGTAAGTGAAAAAGTTATTGTATGTGTCCCCAATGCTCAATCGTTTTCAGCAATGTGTTCTGATTTTGTTGAAATGGCTGAGTCTCACATGGATGAGGAATTGGGAATTTGCTTGGGAGACAAATTGGTACTATCCAACGAGACCGGGCTAGAAGATAATGTTCAACAGCTTACAATCATTACAAGAGTCAAAGAAGTGCTGCCTTTGATGATATGGCATGATATGATGAAAGCACTAAGGAAATCATTGGCAGCATTTAAAGAGAAATACGTTGCAGAATTTAAAGAGAAATATGTTGCTTCAGCAAAACATAATTGTCAGCCATCAGCCAAAAAGTTGCTGACTTCATTATTTTTCGAAAAGGCAGGTTTTCTGTTGATATGCCTTGCAACCTTTAGGAAACATTTCCCAAAAAATATGTTTTCTGAACAAGTAAGCAAGAGAATAAAATCTCTCATCAAGTGTGTCTCCAAACTTGAGAATCTCTTGAAAGACAGGAATCTCAAGGAATATGATGTACATGTTGCTTTTGGGATATTATCAGGAAAAAGGGAAACAATTTCTGTGCTTGCCAAAGATTTACGCCAAACAAAGAATCACTGTGTTACTGCTTTGGATGACCTTCTCACTAGACTTGACCTGCCGTTCAACAAAGATTGCATTTGGCTCAGGAATTACTTCATTAGCAATGCAAAATGTGTGCTATGCACTCCATTATCAACATTTGATCTTCAGCTTTCAGCTGGTTCTATCGAGACACTTATTGTTGACAATGCCGATCAAATAAGAGATTATGATTTTATTCTTCCTTTAACTCTCCGCGATGTCAAAAATATTGTATTAACAGGAGATCCAAGTAAGGTAAAGTTCTTGTCTATACGTCCTTCTCGTCATTTTTGAATAACTGTCATTGCTGACTATTGCCATCTCGCTTTGATCTTAAATTACTTTTTAAATGGTTATATTATGATGAAAGAAAGTTGTATAGTTATATATTCTTAAGCTATGCTTTTTGCTAAAAGGATATGCTCAAAGATTAAATTGGTAAGAACTAATGCCAATTATTCAATAACAAAGGTATAACATTTGTCAACTAATTTAATTTAGGTGAAGGAAGGATCATTCTTTCAGAGATTGCTGTCAGTCGGCTTTAGTGTCTTTGAATTGAGAAGGCAATACAATCTGTTGGATGACAAATAGAGACATGAGGCAGATGGGCAAAATACCCTTTCCGAAGCTTTAAATGACAAGATAAAGGCTGAAGAGCTGTCCCTTACAATTGGTTCACCGGTAAGTTTAGCTTGTCTTAAATATGTATGTCTTTACTAAATTACTTTTGAAAGAAAATAGCAGTTGCTATTAGGACAAACATTGGTTGTATAGTAATTGCTGTAAAAATAGGACTGAGCCTAACTATCAAGTGGTCAAGTAGGGAGTAAGGACTGAAAAAGGCTTATGATTCATTTTAGACAAAAGATGCTACTAGCTGATACATGACCCAAAGAGAAACTATTTTGTGTATGAGAGAACAGTTAACAACAACCTGGAGATAGCTTCATAGTTTCACATGTTTAAATGTTTCTTACAGAAACAACTATATTCTGAGTTCACCTGGCTCCATCGTCCTTACAATCAGAAGTACATCTTACCTCAGTTGCGCGACCAGAAAGGACATCGTATGTTTTTCTTTTCCATATCCAGCCTTTCAACTTTTTCAACAAGTTCATGTGGTTATGATGTTTGTGTTGTGGTGATATGCAGCTCACTGTACTGTACATGCTAGTTTAGCGGCTTTGGAATTCAAGTACAAGTATAAAGCCGCATCAGAAAACCCTCCTCATGATTTCAGCTCCAAATTCTGTACAAAGCATATGTTGAATGTATATGCTGCTAAGTACGGCGAACTAGGAAGTGAGCGTGAAAGTACAAGGGGTAGCAAACGCCTTTCAAATGTCTTGGATATATTGCAAAATGATGGAGCCAAGAGAGAAGCAATGATGGGCAAACAGGTATTAGATCATCCATTCTGCATTACTTCCATATTCATTTATGGTTTAATCTTATGTTTAGGATTGTACAACTAATTCAATAAATTTCATTTAAAAGTTCCTTAGCATTATAACTGAAACTGATTTTCTGATTATTGTTAGATATATTTAATTTCTAATTACATTATTAATATTTTTAGGTCTATAAAATCTCTTCATATGCGTGTACATACAAAATTGGAAAAGATACTGAGTGTCTTCAAGAAACCATCGATCATTTGAAGATAGGCGACATTTCAATTGGATCATTTAAAGTTTCCGAAAATCTCAGGTTTTTTAAGCCCGGAGAAGTGTACATTTACAACCCAGAAAAGCCAGTACTCACTCCAACAGCAAATCAGCCAAGTGCCCACTGCGTGCTGGTAATAGGAGGTGGAGGCTGCCCAAGCGACAGTACTGCGGAACCTGTCTTAGCTTGCAACATGCAATTCATGATACAAAATAGCTATGGCAAAGGTTTCGGGGAACTGGGAATTGGTAGAGTACGCGGAGATTCGTTCAGTACCATGCATCGGATCAGTTTGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA033378