BGIOSGA029097

From RiceWiki
Revision as of 17:16, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA029097

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA029097, complete gene.

LocusTag

OJ1211_G06.31

Ensembl Transcript ID

BGIOSGA029097-TA

Ensembl Protein ID

BGIOSGA029097-PA

Length

5629

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:28872306..28877934

Sequence Coding Region

28872306..28874927,28875652..28876083,28876336..28876410,28876730..28876798,28877803..28877934

Genome Context

<gbrowseImage1> name=IndicaChromosome08:28872306..28877934 source=RiceIndica08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome08:28872306..28877934 source=RiceIndica08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGAAGGACCTCAAGGCTGTCGCCTACGAGGCCGACGACGTCCTCGACGACTTCGAGTACGAGGCTCTGCGCCGCGAGGTCAAGATCGGCGACTCCACCACCCGCAAGGTACTCGGCTACTTCACGCCGCATAGCCCACTCCTGTTCCGTGTTACCATGAGTAGGAAGCTGGGCGATGTCCTCAAGAAGATCAACGATCTGGTTGAAGAGATGAACAAGTTTGGCCTGATGGAGCACACAGAGGCGCCACAGCTTCCTTATCGGCTAACACACTCGGGGCTGGACGAGTCAGCAGACATATTTGGGCGAGAGCATGACAAGGAGGTGTTGGTTAAACTGATGCTGGATCAGCATGATCAACAGAATTTGCAGGTTCTCCCCATCGTGGGGATGGGCGGTTTGGGCAAGACAACGCTTGCGAAGATGGTGTACAACGATCCGATTGTCCAGAAACATTTCCAACTGAAGATGTGGCACTGTGTTTCGGAGAACTTTGAACCTATTTCTATTGTGAAATCCATCATTGAGTTGGCTACAAATAGAAAATGTGACCTACCTGACTCAATTGAGTTGTTGCGAAGGCGACTTGAAGGAGTCATTGACAGGAAAAGGTTTCTACTTGTTCTTGATGATGTATGGAATGAGGACGACAACAAGTGGAATGAACACCTAAGGCCACTTCTGAATTCTGTCGGGGGTCCAGGGAGCATTATAGTCATCACAACTCGCAATCGGCGGGTGGCATCTATAATGGAAACCCTTCAACCCTATAAGCCAGCATGTCTAAGTGAAGATGAATCATGGGAATTGTTCTCGAAGAGAGCGTTTGGTAGAGACGTACAAGAGCAAGAAGATTTGGTCACCATTGGCAAATGTATTGTACATAAATGCAAGGGGCTGCCACTTGCTCTGAAGACGATGGGCGGTCTAATGAGTTCCAAACACCAAGTCAAGGAATGGGAAGCCATCGCAAGAAGTAATATTGGTGATAGTGTCAAAGGAAAAGACGAAATCTTATCAATACTAAAATTGAGCTACAAACACTTGCCATCTGAAATGAAACAATGCTTCACCTTCTATGCAATTTTCTGCAAGGACTATGAGATGGAGAAGGACATGTTGATCCAACTATGGATAGCAAATGGTTTTATTCAAGAAGAGGGCACAATTGAGTTGTCACAAAAAGGCGAGTTTGTTTTCAATGAGTTGGTTTGGAGATCATTTCTTCAAGATGTTAAAACAATATTATTCATAAGCTTAGATTATGACTTTGTTGTATGTAAAATGCATGATTTAATGCATGACTTAGCAAAAGACGTTTCAAGTGAATGTGCAACTACAGAAGAACTGATTCAACAGAAAGCACCATCTGAAGATGTTTGGCATGTGCAAATATCAGAAGGTGAATTAAAACAAATCAGTGGATCATTCAAAGGTACAACATCTCTCCGCACTTTGTTGATGGAATTACCATTATACAGGGGTCTTGAAGTGTTGGAACTGAGGTCATTTTTCTTAGAAAGGTTAAAACTGAGGTCGTTGAGAGGACTGTGGTGTCACTGTAGGTACGATTCTTCTATTATCACTAGCCATCTCATAAATACAAAACACTTACGATATCTTGACCTTTCTAGGTCTAATATACATAGACTGCCAGATTCAATATGTGCATTGTATAACTTACAATCACTGAGGCTCAATGGCTGCAGCTATCTAGAATGTTTACCTGAAGGCATGGCAAATCTAAGGAAACTCAACCACCTTTATCTGTTGGGATGCGATAGATTAAAACGGATGCCCCCAAATTTTAGTCTACTGAACAATCTACTGACACTAACAACGTTTGTCGTGGACACCGATGCTAGCAGGGGAATTGAGGAGCTCAAACAGTTGAGATACCTTACCAATATGTTGGGGCTGTACAATTTGAGAAAAATAAAGAGTACATCGAACGCGAAAGAAGCCAATCTCCATCAGAAACAAGAGCTGAGTATATTACGATTATTTTGGGGCTGCATGTCATCCTACATGCCTGGAGACAAAGACAATAATGAGGAAGAAATGTTGGAATCTCTTAAACCTCACAGCAAGCTTAAAATTTTGGATTTATATGGTTATGGTGGAAGTAAAGCCTCAGTGTGGATGAGAGACCCTCAAATGTTCCGGTGCTTAAAAAGGCTCATTATTGAACGATGTCCAAGATGTAAGGACATTCCAACAGTGTGGCTATCAGCCTCTCTTGAGTATTTGTCCTTGTCTTATATGACTAGTTTGATCTCATTATGTAAGAACATTGATGGGAACACCCCAGTGCAGTTATTTCCAAAGTTGAAGGAGTTGATATTATTTGTTTTACCGAACTTGGAGAGGTGGGCAGAAAACAGTGAGGGGGAGAATAATGATGTGATCATTTTCCCGGAGCTTGAAAGCCTAGAATTGAAGAGTTGCATGAAAATTTCAAGTGTTCCGGAAAGCCCGGCTCTCAAAAGGCTGGAGGCTCTGGGGTGTCATAGCCTCTCAATTTTCTCACTTTCACATCTCACATCATTGTCTGACCTTTATTACAAAGCAGGTGATATTGACTCTATGAGGATGCCTTTGGACCCTTGTTGGGCTTCTCCCTGGCCAATGGAGGAGCTCCGTTGCTTGATTTGCCTTCGACATCTGTCTTTTCGTGCATGTGGCAAGTTGGAGGGGAAGTGCAGATCATCGGATGAAGCCCTTCCGCTGCCCCAACTAGAGAGGTTTGAAGTATCGCATTGTGACAATTTACTGGACATACCCAAGATGCCGACGTCACTTGTGAATTTGGAAGTTTCACATTGCCGAAGTTTAGTGGCACTGCCTTCGCACCTGGGAAATCTGCCCAGACTCAGATCGCTTACTACGTATTGCATGGATATGCTGGAGATGCTGCCCGATGGGATGAATGGCTTCACAGCTCTTGAGGAATTGGAGATTTTTAACTGTTTACCGATAGAGAAGTTCCCTGAGGGTCTCGTTCGACGTCTCCCGGCCCTGAAATCCCTGATTATACGTGACTGCCCATTTTTGGCGGCGGGGTGGATGGCGCCGGTGTTCGAGAGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGCGTGGTTCCTCGACCAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATGCTCTAGGAGAACATGGCATCATATGTTTGGAAGATGAGCATGAAATCGCAACAGTCGGTCCACACTTCAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGGAGGTTACAGATGA</cdnaseq>

Protein Sequence

<aaseq>MKDLKAVAYEADDVLDDFEYEALRREVKIGDSTTRKVLGYFTPHSPLLFRVTMSRKLGDVLKKINDLVEEMNKFGLMEHTEAPQLPYRLTHSGLDESADIFGREHDKEVLVKLMLDQHDQQNLQVLPIVGMGGLGKTTLAKMVYNDPIVQKHFQLKMWHCVSENFEPISIVKSIIELATNRKCDLPDSIELLRRRLEGVIDRKRFLLVLDDVWNEDDNKWNEHLRPLLNSVGGPGSIIVITTRNRRVASIMETLQPYKPACLSEDESWELFSKRAFGRDVQEQEDLVTIGKCIVHKCKGLPLALKTMGGLMSSKHQVKEWEAIARSNIGDSVKGKDEILSILKLSYKHLPSEMKQCFTFYAIFCKDYEMEKDMLIQLWIANGFIQEEGTIELSQKGEFVFNELVWRSFLQDVKTILFISLDYDFVVCKMHDLMHDLAKDVSSECATTEELIQQKAPSEDVWHVQISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLERLKLRSLRGLWCHCRYDSSIITSHLINTKHLRYLDLSRSNIHRLPDSICALYNLQSLRLNGCSYLECLPEGMANLRKLNHLYLLGCDRLKRMPPNFSLLNNLLTLTTFVVDTDASRGIEELKQLRYLTNMLGLYNLRKIKSTSNAKEANLHQKQELSILRLFWGCMSSYMPGDKDNNEEEMLESLKPHSKLKILDLYGYGGSKASVWMRDPQMFRCLKRLIIERCPRCKDIPTVWLSASLEYLSLSYMTSLISLCKNIDGNTPVQLFPKLKELILFVLPNLERWAENSEGENNDVIIFPELESLELKSCMKISSVPESPALKRLEALGCHSLSIFSLSHLTSLSDLYYKAGDIDSMRMPLDPCWASPWPMEELRCLICLRHLSFRACGKLEGKCRSSDEALPLPQLERFEVSHCDNLLDIPKMPTSLVNLEVSHCRSLVALPSHLGNLPRLRSLTTYCMDMLEMLPDGMNGFTALEELEIFNCLPIEKFPEGLVRRLPALKSLIIRDCPFLAAGWMAPVFERLTGIRALADSARFKAWFLDQIGVLHHGNMPYLVPSLHALGEHGIICLEDEHEIATVGPHFRQASNFLMPFKLKCQEGGYR</aaseq>

Gene Sequence

<dnaseqindica>1..2622#3347..3778#4031..4105#4425..4493#5498..5629#ATGAAGGACCTCAAGGCTGTCGCCTACGAGGCCGACGACGTCCTCGACGACTTCGAGTACGAGGCTCTGCGCCGCGAGGTCAAGATCGGCGACTCCACCACCCGCAAGGTACTCGGCTACTTCACGCCGCATAGCCCACTCCTGTTCCGTGTTACCATGAGTAGGAAGCTGGGCGATGTCCTCAAGAAGATCAACGATCTGGTTGAAGAGATGAACAAGTTTGGCCTGATGGAGCACACAGAGGCGCCACAGCTTCCTTATCGGCTAACACACTCGGGGCTGGACGAGTCAGCAGACATATTTGGGCGAGAGCATGACAAGGAGGTGTTGGTTAAACTGATGCTGGATCAGCATGATCAACAGAATTTGCAGGTTCTCCCCATCGTGGGGATGGGCGGTTTGGGCAAGACAACGCTTGCGAAGATGGTGTACAACGATCCGATTGTCCAGAAACATTTCCAACTGAAGATGTGGCACTGTGTTTCGGAGAACTTTGAACCTATTTCTATTGTGAAATCCATCATTGAGTTGGCTACAAATAGAAAATGTGACCTACCTGACTCAATTGAGTTGTTGCGAAGGCGACTTGAAGGAGTCATTGACAGGAAAAGGTTTCTACTTGTTCTTGATGATGTATGGAATGAGGACGACAACAAGTGGAATGAACACCTAAGGCCACTTCTGAATTCTGTCGGGGGTCCAGGGAGCATTATAGTCATCACAACTCGCAATCGGCGGGTGGCATCTATAATGGAAACCCTTCAACCCTATAAGCCAGCATGTCTAAGTGAAGATGAATCATGGGAATTGTTCTCGAAGAGAGCGTTTGGTAGAGACGTACAAGAGCAAGAAGATTTGGTCACCATTGGCAAATGTATTGTACATAAATGCAAGGGGCTGCCACTTGCTCTGAAGACGATGGGCGGTCTAATGAGTTCCAAACACCAAGTCAAGGAATGGGAAGCCATCGCAAGAAGTAATATTGGTGATAGTGTCAAAGGAAAAGACGAAATCTTATCAATACTAAAATTGAGCTACAAACACTTGCCATCTGAAATGAAACAATGCTTCACCTTCTATGCAATTTTCTGCAAGGACTATGAGATGGAGAAGGACATGTTGATCCAACTATGGATAGCAAATGGTTTTATTCAAGAAGAGGGCACAATTGAGTTGTCACAAAAAGGCGAGTTTGTTTTCAATGAGTTGGTTTGGAGATCATTTCTTCAAGATGTTAAAACAATATTATTCATAAGCTTAGATTATGACTTTGTTGTATGTAAAATGCATGATTTAATGCATGACTTAGCAAAAGACGTTTCAAGTGAATGTGCAACTACAGAAGAACTGATTCAACAGAAAGCACCATCTGAAGATGTTTGGCATGTGCAAATATCAGAAGGTGAATTAAAACAAATCAGTGGATCATTCAAAGGTACAACATCTCTCCGCACTTTGTTGATGGAATTACCATTATACAGGGGTCTTGAAGTGTTGGAACTGAGGTCATTTTTCTTAGAAAGGTTAAAACTGAGGTCGTTGAGAGGACTGTGGTGTCACTGTAGGTACGATTCTTCTATTATCACTAGCCATCTCATAAATACAAAACACTTACGATATCTTGACCTTTCTAGGTCTAATATACATAGACTGCCAGATTCAATATGTGCATTGTATAACTTACAATCACTGAGGCTCAATGGCTGCAGCTATCTAGAATGTTTACCTGAAGGCATGGCAAATCTAAGGAAACTCAACCACCTTTATCTGTTGGGATGCGATAGATTAAAACGGATGCCCCCAAATTTTAGTCTACTGAACAATCTACTGACACTAACAACGTTTGTCGTGGACACCGATGCTAGCAGGGGAATTGAGGAGCTCAAACAGTTGAGATACCTTACCAATATGTTGGGGCTGTACAATTTGAGAAAAATAAAGAGTACATCGAACGCGAAAGAAGCCAATCTCCATCAGAAACAAGAGCTGAGTATATTACGATTATTTTGGGGCTGCATGTCATCCTACATGCCTGGAGACAAAGACAATAATGAGGAAGAAATGTTGGAATCTCTTAAACCTCACAGCAAGCTTAAAATTTTGGATTTATATGGTTATGGTGGAAGTAAAGCCTCAGTGTGGATGAGAGACCCTCAAATGTTCCGGTGCTTAAAAAGGCTCATTATTGAACGATGTCCAAGATGTAAGGACATTCCAACAGTGTGGCTATCAGCCTCTCTTGAGTATTTGTCCTTGTCTTATATGACTAGTTTGATCTCATTATGTAAGAACATTGATGGGAACACCCCAGTGCAGTTATTTCCAAAGTTGAAGGAGTTGATATTATTTGTTTTACCGAACTTGGAGAGGTGGGCAGAAAACAGTGAGGGGGAGAATAATGATGTGATCATTTTCCCGGAGCTTGAAAGCCTAGAATTGAAGAGTTGCATGAAAATTTCAAGTGTTCCGGAAAGCCCGGCTCTCAAAAGGCTGGAGGCTCTGGGGTGTCATAGCCTCTCAATTTTCTCACTTTCACATCTCACATCATTGTCTGACCTTTATTACAAAGCAGGTGATATTGACTCTATGAGGATGCCTTTGGACCCTTGTTGGGCTTCTCCCGTGAGCTTAGATGTTAGCTCACCAGCGAACATGATGGTGCCTCTGGAAGACAAGAAAAGCCGTAGACCCTTCGAAGCCCTACGGAGCTTGACTCTGCGTGGTTCTAACTGCTTCTTAGCAATGTGCAGTTTGTTTTTTGCCGGGACGGCCAAAGTAGGCCGGCCAATTTCATTAAGATTGGGGGAAATAAAGTTTTAATTACAACGACATGAAGGATGTCGCGCCGGTCTCAGGCAAACTCAAGCCCGGAAAGAAAAGGAAAAAATGAGGCAAGTCCCGCCTCTAATCGGGATTACTCGCTAGCCTGGAAAAAAATCCCTGCTGCCCTCCAAATTGCAATTTCCTCGTTGATGTCATCCGCTAGCCGGTCAACCGACTTGGCGATGTGTTGAAAGATCCTTGTATTTCACTCTTTCCAGATAAGCCAACAAATTAGCATGAACAGACTATCGAAATCCGTCCTATACGTGTTCTGAAAATGCCGTCTTGTTGCGATCCACCAATCTGCAAGCGGCATGCCATCTTCCGCAGGGATTGCAATGTTAATGTTGCACCAACGTCTCAGCTTGCGCCAAACCGCCGCCGTATAATCACAGGACACAAGAAAATGATGGCAGTCTTCGTTCTCGCAACGTGCAGTTTGTCAAAAGTGCATCTTGGGCTCTGGGAGTGCTTTGCTTTTGTGAAGGATTTGACTGTCCATGGTTGTGATGATCTTGTGCAGTGGCCAATGGAGGAGCTCCGTTGCTTGATTTGCCTTCGACATCTGTCTTTTCGTGCATGTGGCAAGTTGGAGGGGAAGTGCAGATCATCGGATGAAGCCCTTCCGCTGCCCCAACTAGAGAGGTTTGAAGTATCGCATTGTGACAATTTACTGGACATACCCAAGATGCCGACGTCACTTGTGAATTTGGAAGTTTCACATTGCCGAAGTTTAGTGGCACTGCCTTCGCACCTGGGAAATCTGCCCAGACTCAGATCGCTTACTACGTATTGCATGGATATGCTGGAGATGCTGCCCGATGGGATGAATGGCTTCACAGCTCTTGAGGAATTGGAGATTTTTAACTGTTTACCGATAGAGAAGTTCCCTGAGGGTCTCGTTCGACGTCTCCCGGCCCTGAAATCCCTGATTATACGTGACTGCCCATTTTTGGTAAGTACGCGGCATGATTCACTGATTCGTCATTTGCCAAATATTTCATCCAGAAGTGACTTAAATTTGTCAAACATTAGGCCATTGCTGCTGTTCTCAACTTTCTGATGCATTCGCTGGTATAGTTTGGAGTTTTTTGTCCCGTCCCTTCACTGCCTTGCCCCTCACAAGTCACGAACGAATCTCACCTCTCGCGGACTCGCCCCGCTCTGTCCTTGCTTCCCTCCTCCGCCGCGGTGTTCAGGGCTTCAGGCGGCGGGGTGGATGGCGCCGGTGTTCGAGAGGCTGACGGGGATCCGAGCACTCGCCGACTCCGCCCGCTTCAAGGTATGCCCCCTCTTTTCCCCCTCACCTATCCATCAAGTTAGCAACCGCCGACCTGCGCGGAATTACTACTCGTTTTGCTCATTCAGTTGCGCTTGTGCTTGTGATTATACACCCTAACCATTGATTACTCGTGCGTTTCCTAGTTATGGTACTGCGAATCACGCGGTCGAATTCAGGGTGGATATGGAATTATTTGGGGGAAATTTCGGCTAGAAAATTTACGGGGAAAGTTGATTTCCCACCCAGCGCGTAGTACTAGCATTTACCACTAGCACTTCTTCTGCTCGTTTGATTAAAGCTGCATTTGTCTGGCTTGCAGGCGTGGTTCCTCGACCAGATTGGTGTTCTTCACCATGGGAATATGCCTTACCTGGTGCCATCCTTGCATGTATGTATCTTGGTACACACTGTATATAATTATATTCTCTAACTTATATATCCATTTCTCTTATTTTGTTCTACATCTGACTCAATGCACTGATTAAGTTATATTTGGTTGTTGCACTAGTGTTCAGTTTACTTTTTTTTCCCCTTCTCTGATGCGATGCACTGGTTAAGTTATATTTTGGTTGTTGCAGTGGGAAAGGGGCGAAGATGGTTATCATTAGCAATTCGTTAAGGAGGTCGACTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTCACAACTCGTCTTGTTTCCTCTCGGGGCCATCACTAGCGGGGAACTCACACATCAGTATCTTCACAAGAACTAAGCTTCTAGCTGTCGGTATCTTCTGCTAACAGAAGCTGCAGTGGGGTCTCCTTGAGGAATGTGGGGTGCAATAGATATTATGATCAGAATTAAAGTTGGCTTACCAGCAGTGATCTATTTAAGAAGGTATTTCTGTTGTTGCACCTTCTAAAAATTTATGTTAACCATGGAAATTTGGAACTTTCAATAACACATAGCTCTCAGTTTTTTTTTTTTTTTGCGTGGACTTATTTTGGAGGTCTAGTTTACAAAAAAAAAATTAATAAAAATAAAAATCACTAGGTGTAACAATGCCTGAAATCTGATTCTCTAATCTCAATTAATATTTTTGTTGGATTCAAGAGCTCAAATTTAAAATGCTACCAGGACTTAATTTAGGATCATCTTCATTGTCACCTGTTCGGTGGAGCAATTTTTGGTGTCCTGCCACAAGTATAAAAATCATAGTGGGTTATGCTTAAATTTTTGCATTGATAACCGTCTCGATCATTTGTAACTTCCCAGACATAAAGATGCAGTTTCTGTCTCCAAAGGAAAACAAAAAAAAGGATATTTGGTTTCCCTTTTTTTGGTGGAGTAAAGAAGATACTTCTAGCTGTTTCTCATGGTTTGGTAATGTACACTGTAACATCACCATCTGTACTTCACTGAAAACAGGCTCTAGGAGAACATGGCATCATATGTTTGGAAGATGAGCATGAAATCGCAACAGTCGGTCCACACTTCAGACAAGCTTCAAACTTCCTCATGCCCTTCAAGCTCAAGTGTCAAGAAGGAGGTTACAGATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA029097