BGIOSGA001071

From RiceWiki
Revision as of 18:08, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA001071

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001071, complete gene.

LocusTag

OsI_03168

Ensembl Transcript ID

BGIOSGA001071-TA

Ensembl Protein ID

BGIOSGA001071-PA

Length

3198

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:30394952..30398149

Sequence Coding Region

30396414..30398149,30394952..30396203

Genome Context

<gbrowseImage1> name=IndicaChromosome01:30394952..30398149 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:30394952..30398149 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACTCCCAGCCTCTGTTGGCAGCTTGGATGAACTTACAACGGATGGCAGTTTCACTGCAAGACTGGAGCAAGATCTCCTTCGGGTCGGTGCGCAAAGAGATACAGCGGTTGGAAAGAAGGCTGAAGTTCTTGCGTAACGAGGTGTTCACGGATGCTATCATCCGGGAAGAGAGACTTTTGGAACAGCGGTTATGTGATCTCTTTGAAAGAGAGGAAATTATGGCAAAACAGCGGTCTCGAATTGAATGGCTGAAAGAAGGTGACCGAAATACATCCTTCTTCCATGCCCGTGCCTCAGCAAGGAGGCGCACCAACAAGATTAAGTTGCTGGTTAGGGATGATGGTTCCTCCTGTAGCGAATCTCAAGGCATCAAACTCATGGCTGAGCATTTCTTTGAAAAACTTTTCACCTCTGAGCAGTGTGAGTCAGTAGAGGAAGTCCTAGAGGCCATTCCATGTAAGGTGGACGAATCCATAAATGAAGAACTGTGCAAGGCCTACTCGGATGAGGAAATAAAAGAGGCGTTATTTCAAATGGGTCCAACTAAGGCACCCAGCCCAGATGGTTTCCTAGCTCTTTTCTACCAATCTCATTGGAATTTTTTGGAGAATGACATCTGCAGGGCAGTGCGTGGTTTTCTTACAGGGGACGAAATTCCAGAAGGCCTGTGTGACTCTATCATTGTCCTGATCCCAAAGATCCACAATCTGGTGCACCTCTCAAAATTTCGGCCTATCAACTTATGTAACGTCCTCTATAAGATTGCCTCTAAAGTTTTGGCTAATCACCTCAAAATCTTCCTACCTGACATCGTGTCGGAATTCCAAAGTGCATTTGTGCCCGGCTGGCTCATTACAGACAATGCACTTGTGGCGTTTGAATGCCTACACTCAATCCGAAGGCAACATAGCAAAAATCCTTTTTTTGCTCTCAAGATAGATATGATGAAAGCCTATGATCGAATTGAGTGGTCTTATCTCCAAGGATGCTTAACGAAGCTTGGGTTTGCCCCTGCCTGGGTTAGTTCTGTGATGAGATGCGTCACCTCAGTCAGATATGCCGTTCGCATTAATGGGGAGCTAACTAGGCCAGTGATACCTTCAAGGGGCATAAGACAGGGGGACCCAGTTAGCCCTTACCTCTTCCTGTTGTGTATAGAGGGGTTGTCCTACTTGCTGCAAAGAAAGGAATCTTTGGGGTTGCTCCATGGAATCAGAAACGGTCACCAGGGTCCGCCAATCTCTCACCTTCTTTTTGCAGATGATAGCATTTTCTTTGCCAAGAGTGATCCAAGAAGTGTTCAGGTCCTGAAATCTACCTTACAGTCCTATTGCAACGCATCGGGGCAGAAAATCAACCTTCAAAAATCTTCGCTCCTCTTCGGCCGATACTGCCCTGAAGCCATCAAAACATGTGTAAAGGACTGTTTACAAGTGTCTAACGAGGCTCTTCAGGACACCTATTTGGGCATGCCTACGGAGATAAACTGTGCAGTAACCAGCTCCTTTAATTTCTTGTCTGAACGGGTATGGAAGAGAGTGAACGGGTGGAATGACCGGCCACTGTCAAGGGCTGGTAAGGAGACTATGCTTAAGGCAGTAGTGCAGGCGATTCCGACCTACATCATGAGTTGTTTTCAAGTTCCAACAACTATTTGTGATAAGATGAAATCCTCAATGGCCAACCATTGGTGGGGTTATGAAGATGGGAGGAAAAAGATGCATTGGCGCTCTATTTTGTTTGGGCGGGAGTTGTTGAAAAAGGGGGTGCGCTGGGCTGTTGGCGATGGTTCGACCATTAAGATCACGAAGGACAAATGGATACCAGGTGTGCAAGCAGGAATGGTGAATACCCGCTTCCCTATCCCTGATGATGTTACTGTCGATTGGCTCATGAATCCTGAAAGGAATGCTTGGGATGAGGAGATTGTCAAGGCAGTTTTCAACGATGATATTGCAAGAGAAGTTTTGCAGGTTCCCATAAGTCGTCATGGGGGAGAAGATTTTGTTTCTTGGCCACATGACAAAAGGGGGTTGTTTACTGTTCGCTCTGCTTACAACTTAGTGAGATCAAATTTATTTGTGGTGGCTCAGAGTTCCAATGGGAGAGGACAACACTCTGGAGCGAATGTGGACTCGCAATTCTGGAAGGCACTTTGGACAATCAATGCGCCGGGGAAAATGCTGATACATTTGTGGAGGTCAGTACATGATTGTCTTCCTACAGGGTTCCAACTCCGGAGACGCCATGTTCCTGCTACGGAGGGATGCATCTTTTGTGGTCATGATGATAGAATTGAGCATGTCTTCCTTGTGTGCCCCTTTGCTGCAACTGTTTGGGATGCCATCAAGGAGAAGTTTCAGATTAACTTGTGCAGACGGGAATTATGCAATATGAGGCAATGGGTGTTTGATTTCCTAACTCGCAGCTCTCACATTCAGAAGACAGTCCTGGCTGTTACTCTGCGGCACATTTGGGAAGCGAGGAATTTTTCTAGGAATAACCCTGTTATTACCCACCCGCGCCAAGTGATTCACAAAATTGTGTCGTATGTCGATATGATTGTGCAGCACTGCCCCAAGGATAGGAATGCCTCTGGGTGTGATCTCCCCCTTCCAGTTACAAAGTGGACACCACCGCCGCCAGGCATGGTACTAATTAACTCAGATGCTGCACTCTTCCAAGCTTCTAATCAGACGGGTTTGGCCTTTGTAATTCGGGATCACAGTGCCACCTGCATGCTTGCTGCAAACAAGAGGATAACCGGATTGCTCTCTCCAGAACTAGCGGAAGCTTTGGTGATCCGTTTCGCCTTGGAACATGCAAAGGCGGAAGGTTTCCAGAATGTGTTGATGGCCTCAGATTGCCTGTCAGTTATCAAGAGAATTCAGTCTGGGGCACGAGACCTTTCAGTTGTTGGCGTTATTGTCCGTGATATTAAGAAATTGGAGACTGAGTTCCTGGAATGCTCCTTTATCGTTTAA</cdnaseq>

Protein Sequence

<aaseq>MDSQPLLAAWMNLQRMAVSLQDWSKISFGSVRKEIQRLERRLKFLRNEVFTDAIIREERLLEQRLCDLFEREEIMAKQRSRIEWLKEGDRNTSFFHARASARRRTNKIKLLVRDDGSSCSESQGIKLMAEHFFEKLFTSEQCESVEEVLEAIPCKVDESINEELCKAYSDEEIKEALFQMGPTKAPSPDGFLALFYQSHWNFLENDICRAVRGFLTGDEIPEGLCDSIIVLIPKIHNLVHLSKFRPINLCNVLYKIASKVLANHLKIFLPDIVSEFQSAFVPGWLITDNALVAFECLHSIRRQHSKNPFFALKIDMMKAYDRIEWSYLQGCLTKLGFAPAWVSSVMRCVTSVRYAVRINGELTRPVIPSRGIRQGDPVSPYLFLLCIEGLSYLLQRKESLGLLHGIRNGHQGPPISHLLFADDSIFFAKSDPRSVQVLKSTLQSYCNASGQKINLQKSSLLFGRYCPEAIKTCVKDCLQVSNEALQDTYLGMPTEINCAVTSSFNFLSERVWKRVNGWNDRPLSRAGKETMLKAVVQAIPTYIMSCFQVPTTICDKMKSSMANHWWGYEDGRKKMHWRSILFGRELLKKGVRWAVGDGSTIKITKDKWIPGVQAGMVNTRFPIPDDVTVDWLMNPERNAWDEEIVKAVFNDDIAREVLQVPISRHGGEDFVSWPHDKRGLFTVRSAYNLVRSNLFVVAQSSNGRGQHSGANVDSQFWKALWTINAPGKMLIHLWRSVHDCLPTGFQLRRRHVPATEGCIFCGHDDRIEHVFLVCPFAATVWDAIKEKFQINLCRRELCNMRQWVFDFLTRSSHIQKTVLAVTLRHIWEARNFSRNNPVITHPRQVIHKIVSYVDMIVQHCPKDRNASGCDLPLPVTKWTPPPPGMVLINSDAALFQASNQTGLAFVIRDHSATCMLAANKRITGLLSPELAEALVIRFALEHAKAEGFQNVLMASDCLSVIKRIQSGARDLSVVGVIVRDIKKLETEFLECSFIV</aaseq>

Gene Sequence

<dnaseqindica>1..1736#1947..3198#ATGGACTCCCAGCCTCTGTTGGCAGCTTGGATGAACTTACAACGGATGGCAGTTTCACTGCAAGACTGGAGCAAGATCTCCTTCGGGTCGGTGCGCAAAGAGATACAGCGGTTGGAAAGAAGGCTGAAGTTCTTGCGTAACGAGGTGTTCACGGATGCTATCATCCGGGAAGAGAGACTTTTGGAACAGCGGTTATGTGATCTCTTTGAAAGAGAGGAAATTATGGCAAAACAGCGGTCTCGAATTGAATGGCTGAAAGAAGGTGACCGAAATACATCCTTCTTCCATGCCCGTGCCTCAGCAAGGAGGCGCACCAACAAGATTAAGTTGCTGGTTAGGGATGATGGTTCCTCCTGTAGCGAATCTCAAGGCATCAAACTCATGGCTGAGCATTTCTTTGAAAAACTTTTCACCTCTGAGCAGTGTGAGTCAGTAGAGGAAGTCCTAGAGGCCATTCCATGTAAGGTGGACGAATCCATAAATGAAGAACTGTGCAAGGCCTACTCGGATGAGGAAATAAAAGAGGCGTTATTTCAAATGGGTCCAACTAAGGCACCCAGCCCAGATGGTTTCCTAGCTCTTTTCTACCAATCTCATTGGAATTTTTTGGAGAATGACATCTGCAGGGCAGTGCGTGGTTTTCTTACAGGGGACGAAATTCCAGAAGGCCTGTGTGACTCTATCATTGTCCTGATCCCAAAGATCCACAATCTGGTGCACCTCTCAAAATTTCGGCCTATCAACTTATGTAACGTCCTCTATAAGATTGCCTCTAAAGTTTTGGCTAATCACCTCAAAATCTTCCTACCTGACATCGTGTCGGAATTCCAAAGTGCATTTGTGCCCGGCTGGCTCATTACAGACAATGCACTTGTGGCGTTTGAATGCCTACACTCAATCCGAAGGCAACATAGCAAAAATCCTTTTTTTGCTCTCAAGATAGATATGATGAAAGCCTATGATCGAATTGAGTGGTCTTATCTCCAAGGATGCTTAACGAAGCTTGGGTTTGCCCCTGCCTGGGTTAGTTCTGTGATGAGATGCGTCACCTCAGTCAGATATGCCGTTCGCATTAATGGGGAGCTAACTAGGCCAGTGATACCTTCAAGGGGCATAAGACAGGGGGACCCAGTTAGCCCTTACCTCTTCCTGTTGTGTATAGAGGGGTTGTCCTACTTGCTGCAAAGAAAGGAATCTTTGGGGTTGCTCCATGGAATCAGAAACGGTCACCAGGGTCCGCCAATCTCTCACCTTCTTTTTGCAGATGATAGCATTTTCTTTGCCAAGAGTGATCCAAGAAGTGTTCAGGTCCTGAAATCTACCTTACAGTCCTATTGCAACGCATCGGGGCAGAAAATCAACCTTCAAAAATCTTCGCTCCTCTTCGGCCGATACTGCCCTGAAGCCATCAAAACATGTGTAAAGGACTGTTTACAAGTGTCTAACGAGGCTCTTCAGGACACCTATTTGGGCATGCCTACGGAGATAAACTGTGCAGTAACCAGCTCCTTTAATTTCTTGTCTGAACGGGTATGGAAGAGAGTGAACGGGTGGAATGACCGGCCACTGTCAAGGGCTGGTAAGGAGACTATGCTTAAGGCAGTAGTGCAGGCGATTCCGACCTACATCATGAGTTGTTTTCAAGTTCCAACAACTATTTGTGATAAGATGAAATCCTCAATGGCCAACCATTGGTGGGGTTATGAAGATGGGAGGAAAAAGATGCATTGGCGCTCGTGAGAATGGCTGTCTACGCCAAAATATCTTGGCGGTATGGGTTTCAGGGACTTGGTCATTTTTAATCAAGCGATGTTGGCCAGACAGGGTTGGCGTATTCTCACAGATCCAAATTCACTTTGCTCAAGGGTTCTGAAAGGTAGGTACTTCCTAGACTCAGATTTTTGGTCTGCCCCTAAACCTCGATCTGCCTCCTTTACCTGGCGTAGTATTTTGTTTGGGCGGGAGTTGTTGAAAAAGGGGGTGCGCTGGGCTGTTGGCGATGGTTCGACCATTAAGATCACGAAGGACAAATGGATACCAGGTGTGCAAGCAGGAATGGTGAATACCCGCTTCCCTATCCCTGATGATGTTACTGTCGATTGGCTCATGAATCCTGAAAGGAATGCTTGGGATGAGGAGATTGTCAAGGCAGTTTTCAACGATGATATTGCAAGAGAAGTTTTGCAGGTTCCCATAAGTCGTCATGGGGGAGAAGATTTTGTTTCTTGGCCACATGACAAAAGGGGGTTGTTTACTGTTCGCTCTGCTTACAACTTAGTGAGATCAAATTTATTTGTGGTGGCTCAGAGTTCCAATGGGAGAGGACAACACTCTGGAGCGAATGTGGACTCGCAATTCTGGAAGGCACTTTGGACAATCAATGCGCCGGGGAAAATGCTGATACATTTGTGGAGGTCAGTACATGATTGTCTTCCTACAGGGTTCCAACTCCGGAGACGCCATGTTCCTGCTACGGAGGGATGCATCTTTTGTGGTCATGATGATAGAATTGAGCATGTCTTCCTTGTGTGCCCCTTTGCTGCAACTGTTTGGGATGCCATCAAGGAGAAGTTTCAGATTAACTTGTGCAGACGGGAATTATGCAATATGAGGCAATGGGTGTTTGATTTCCTAACTCGCAGCTCTCACATTCAGAAGACAGTCCTGGCTGTTACTCTGCGGCACATTTGGGAAGCGAGGAATTTTTCTAGGAATAACCCTGTTATTACCCACCCGCGCCAAGTGATTCACAAAATTGTGTCGTATGTCGATATGATTGTGCAGCACTGCCCCAAGGATAGGAATGCCTCTGGGTGTGATCTCCCCCTTCCAGTTACAAAGTGGACACCACCGCCGCCAGGCATGGTACTAATTAACTCAGATGCTGCACTCTTCCAAGCTTCTAATCAGACGGGTTTGGCCTTTGTAATTCGGGATCACAGTGCCACCTGCATGCTTGCTGCAAACAAGAGGATAACCGGATTGCTCTCTCCAGAACTAGCGGAAGCTTTGGTGATCCGTTTCGCCTTGGAACATGCAAAGGCGGAAGGTTTCCAGAATGTGTTGATGGCCTCAGATTGCCTGTCAGTTATCAAGAGAATTCAGTCTGGGGCACGAGACCTTTCAGTTGTTGGCGTTATTGTCCGTGATATTAAGAAATTGGAGACTGAGTTCCTGGAATGCTCCTTTATCGTTTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001071