BGIOSGA003252

From RiceWiki
Revision as of 18:22, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA003252

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA003252, complete gene.

LocusTag

P0038F12.32

Ensembl Transcript ID

BGIOSGA003252-TA

Ensembl Protein ID

BGIOSGA003252-PA

Length

3613

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:10670692..10674304

Sequence Coding Region

10670692..10670799,10672937..10674304

Genome Context

<gbrowseImage1> name=IndicaChromosome01:10670692..10674304 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:10670692..10674304 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCGCGCTTAGGCAGGGCGACGACCCCGCCATCAAGCTCTTCGGCCGCACCATCCCCCTCCTCCTCGACCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGAGGTCATGCCTAATTTAGGAAATGGTGTAAAAACCAATAATGACTTACCTTTAGTCTCAGACAAGCTTTTGATTGTCAAAGGTATTCCTTTTTGTCCCAACAATAGTAAGAAAAATGATTTACAAGGCATCAGCAGACCGGATGGAAGAATAGAAATCGATTCCATGACTGAGGATGTTAAGACTGAGCCTGATGGATCTGTCCCTGAGAAGATACTCAAGAAGCCAGATAAGATTCTGCCATGTCCACGCTGCAATAGCATGGAAACAAAGTTCTGCTACTTCAACAACTACAATGTTCACCAGCCCAGGCACTTCTGCAGGAACTGCCAAAGATATTGGACCGCTGGTGGAGCTATGAGGAATGTCCCAGTTGGTGCTGGAAGACGCAGAAATAAGCATGTGTCAAAATACTGTCAGGCGATGATGACGTGCAATAATACTGTAGCTCCTGGAGATGTTTCTGATGTGGTTCACCATCAGGTTATTACACATGGATCTTCTCTCCTTCCAGCAACACTGAAGGAAAATGAAACACCTACAGAATTCATATCAGAAGTACCACCATGTAAGTCTTCAGCTTCAATCCTTGATATTGGAGAGCCGAATGATACTGACCTTGTTCCCTTGGCCTCTGGTGATAACAAGGAAGAAAAATCATGTGCATCTTCTGTGGTAGTATCCAGCTGTTCAGAGAATCTGATGCCAGATAATGCAATTATGAAAGAGCCAAACAACAGGTCAGGATGTTGTAATGGTGTGGCATTGCCTTTCCCTACTGGACCTGCTTTGGTGCTCCCCTGGAGTCTTGGATGGAACAGTGTTGCTCTCATGCCAGCTACCCAGTGCTCGATGCAGCCCGTTCTTGGGTTAAAAGATGGGATACCCTGCCCGCCTTCATGGCCACCGCAACTGATGGTGCCGGCCCCAGGAATCTGTACTCCTGTTGTTCCAATCCCTCTTGTGCCACCTCTGTGGAGCTGCTTCCCTGGCTGGCCTAATGGAATGTGGAATGCACAATGTCCTGGAGGTAATACTACTGTGCTGCCGTCAACCGCTCCAAACAAAATTTCTTGTTCAGGAAGCAGTTCTCTGGTGTTGGGAAAGCATTCAAGAGAAGAAAGCTTGCAGGAAGAAGAGAAGACGAGAAATTACTTATGGGTACCTAAAACTCTTAGGATTGATGATCCAGCTGAGGCTGCAAAGAGTTCAATCTGGGCGACCCTTGGCATCAAGCCTGACGATAAAGGCATATTCAAGTCTTTCCAGCCAAATGTTGCGAAAAATGGCACGGCACCAGAATCGCCTCAGGCTCTGCAGGCCAATCCAGCAGCATTTTCGCGTTCTCAATCGTTTCAAGAGACGACTTGA</cdnaseq>

Protein Sequence

<aaseq>MAALRQGDDPAIKLFGRTIPLLLDPAAAAAAAAADEVMPNLGNGVKTNNDLPLVSDKLLIVKGIPFCPNNSKKNDLQGISRPDGRIEIDSMTEDVKTEPDGSVPEKILKKPDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVSKYCQAMMTCNNTVAPGDVSDVVHHQVITHGSSLLPATLKENETPTEFISEVPPCKSSASILDIGEPNDTDLVPLASGDNKEEKSCASSVVVSSCSENLMPDNAIMKEPNNRSGCCNGVALPFPTGPALVLPWSLGWNSVALMPATQCSMQPVLGLKDGIPCPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFPGWPNGMWNAQCPGGNTTVLPSTAPNKISCSGSSSLVLGKHSREESLQEEEKTRNYLWVPKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSRSQSFQETT</aaseq>

Gene Sequence

<dnaseqindica>1..108#2246..3613#ATGGCCGCGCTTAGGCAGGGCGACGACCCCGCCATCAAGCTCTTCGGCCGCACCATCCCCCTCCTCCTCGACCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGAGGTGAGCCATCGATTTCATCCAATGCCAATAGGGAAGTAGTCGGAGAGAGGAATCTTTATCTAACTCCCTCCCCGCTTTGGACGAGATGCGACGCGCCTCGCTTTCTCTCTCTCTTTCTCTCTTTTCCTGGCTGCTTTTTGGGGTATCGATGCTTTGGGTTTGCTCTTCTAGTTCGTGTCGGCTAATTAGGAGATTGAGAAATGAGTTTAAAAAAGGGATTAATTCTTTGCCGCCATGGTGTTCGATGCAAATTCTCAAGCACATTCTTCTTGTTTTTTCTCTCTCCAAAGAATTCAAATACCGCCATGGTGTTCGATGCACGGCTCCGAATACACTTTTTGGCAAATACTAAATTGCCAACTTTTGCTTAGATCCATTTTGTAAAAAGTACTCCAAAACAGCAAAACTTTTACTATCTCCGTCCTAAAATAAGTGCAGCCATGAGTTTCAGCGCCCTACTTTGATCATCCGTCTTATTTTAAATTTTTTTATAATTAGCAATTTTGTAGTTATAAGATGATAAAACATGAATACTACTTTACTCGTGAATTATGTTTTTAATTTTTTCAAAAATTTTTCAAATAAGACGAGTTGTTAAAGTTGGGCGCGGAAAACCATCACTGCACTTATTTTGGGACGAATGGAGTACTATTTTGGAGGAACTAAACAGGGCCTAAATATACTAATATAACTAGAGAAAAGAACATTTTTTTTTCAGTTTTAGCTCATTTATTTGAACAAATAGAGTGGGTCAACGGTATATTAGTGACCCATGCTAATCCCCAACCTCATATTTGTTGGTAGGAAAATTCTGTTCTAGAAAATTCTGTTCTATCCTTTCTTGATTTCTTGGCAACATTTGGGGTAAGATTCTGGGAGTTTGATTGGCTTATCTTAGCTTTCTTTGTGCAAAGAACCATCTTTCGATAACCATATGCAGAACCTAGAATAGATGGTACTAAGTCTGTTTGTCCTGAAACCTGATAGACTGGATAGTCCGTGCCTTTGAACCAAATTGCTTATCAGGACTTGATTTCAGTGCACTTGCACTCTAGTATGGGTTAACTTTTGTTGCCAAAGGTACTTTTTACGTACTAGTATATGAGTTATTCCAGCAAGCAATTCTGGAAAAAAAGAAAAAAAAACAGACTCTAAATGCTAAATTGGAGTCTGGAAAAGTAGTGTTATACTATGTACTATGATAGTGGAACTGAGCCTTAGTTTTCAAACAGTAGTTGTACGTACCTCTGAAAACCGTATTGGTTTGCAATTTGGTTTCAAAACACTGGAGAAGGGACTCTGATCAGCTCTCTGCAAGAAGGAACTGAAAATGTGTCATATATCGTACATGTCGATTGCTATTTGCTACAGAGCAAATTTGCCATACATCAAACAATTTTGCATGTCAAACTGACTCCAAAGATGATTTTACTACCAGCCTTAAAAATAAAATGCCCACTCATTACTTATTTACATATGCACATTGTATTGTTGCTATGTAACAGGTTTGATACTGAGTAGCTCTGGTACTAACATGTGAAGTATTGAGCTATGAAACTGAAGTAATGTTTTGCTCGAAGTGCTGCTTTATGCTTAAACTCAAGTGCGCCAGAAAACAGTTGCATAGCCACACAGTGATAACTTGAAATGTTAACATATGGTATTTTTAGCAACCCCAAGTATGAACTAGAGTTTTACAAGTGCAAGTGAATACTGAGTATAATAGAGAAAAGATCCCAACGGGGAGAAATTCTTAGTAACATTAGGCAATAACTTATCGCACAAACATGGCGACTCTGATTATTCAGGGATAACATAAAATGATTTATATTTAACTGAAGGACATTGAAACTGCAACAGAACATTGTAATGGCGATGTATCAGTTGTGCCATCAGGTAGTTTCCGTGACCCCACATGATTCAGCTGAAGCTGAAGAAAGACTTTCATGAAAATTTAGGCCAGTAGCACCTGCATCATTTTGAATATAACATGGCTTATATGCCTCATAATAATTGAATACTTGACACTATCACACTATCACAGTTTTAACATTTTGCTATACTTTTAGCTAAATGATCCAAAATCTCTGCTTGATATTTTATTATTTTCTTACCTCTCATGTATAATCCATTTCAGGTCATGCCTAATTTAGGAAATGGTGTAAAAACCAATAATGACTTACCTTTAGTCTCAGACAAGCTTTTGATTGTCAAAGGTATTCCTTTTTGTCCCAACAATAGTAAGAAAAATGATTTACAAGGCATCAGCAGACCGGATGGAAGAATAGAAATCGATTCCATGACTGAGGATGTTAAGACTGAGCCTGATGGATCTGTCCCTGAGAAGATACTCAAGAAGCCAGATAAGATTCTGCCATGTCCACGCTGCAATAGCATGGAAACAAAGTTCTGCTACTTCAACAACTACAATGTTCACCAGCCCAGGCACTTCTGCAGGAACTGCCAAAGATATTGGACCGCTGGTGGAGCTATGAGGAATGTCCCAGTTGGTGCTGGAAGACGCAGAAATAAGCATGTGTCAAAATACTGTCAGGCGATGATGACGTGCAATAATACTGTAGCTCCTGGAGATGTTTCTGATGTGGTTCACCATCAGGTTATTACACATGGATCTTCTCTCCTTCCAGCAACACTGAAGGAAAATGAAACACCTACAGAATTCATATCAGAAGTACCACCATGTAAGTCTTCAGCTTCAATCCTTGATATTGGAGAGCCGAATGATACTGACCTTGTTCCCTTGGCCTCTGGTGATAACAAGGAAGAAAAATCATGTGCATCTTCTGTGGTAGTATCCAGCTGTTCAGAGAATCTGATGCCAGATAATGCAATTATGAAAGAGCCAAACAACAGGTCAGGATGTTGTAATGGTGTGGCATTGCCTTTCCCTACTGGACCTGCTTTGGTGCTCCCCTGGAGTCTTGGATGGAACAGTGTTGCTCTCATGCCAGCTACCCAGTGCTCGATGCAGCCCGTTCTTGGGTTAAAAGATGGGATACCCTGCCCGCCTTCATGGCCACCGCAACTGATGGTGCCGGCCCCAGGAATCTGTACTCCTGTTGTTCCAATCCCTCTTGTGCCACCTCTGTGGAGCTGCTTCCCTGGCTGGCCTAATGGAATGTGGAATGCACAATGTCCTGGAGGTAATACTACTGTGCTGCCGTCAACCGCTCCAAACAAAATTTCTTGTTCAGGAAGCAGTTCTCTGGTGTTGGGAAAGCATTCAAGAGAAGAAAGCTTGCAGGAAGAAGAGAAGACGAGAAATTACTTATGGGTACCTAAAACTCTTAGGATTGATGATCCAGCTGAGGCTGCAAAGAGTTCAATCTGGGCGACCCTTGGCATCAAGCCTGACGATAAAGGCATATTCAAGTCTTTCCAGCCAAATGTTGCGAAAAATGGCACGGCACCAGAATCGCCTCAGGCTCTGCAGGCCAATCCAGCAGCATTTTCGCGTTCTCAATCGTTTCAAGAGACGACTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA003252