BGIOSGA003813

From RiceWiki
Revision as of 18:26, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA003813

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA003813, complete gene.

LocusTag

OS01G0575000

Ensembl Transcript ID

BGIOSGA003813-TA

Ensembl Protein ID

BGIOSGA003813-PA

Length

6759

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:24477378..24484136

Sequence Coding Region

24477378..24477522,24477632..24477705,24477827..24477922,24478920..24478990,24479080..24479143
,24479247..24479312,24479439..24479486,24479571..24479633,24479711..24479767
,24479856..24480014,24480090..24480158,24480243..24480334,24480892..24480970
,24481519..24481681,24482284..24482408,24482493..24482755,24482827..24482923
,24483014..24483175,24483311..24483415,24483542..24483636,24483716..24483812
,24483906..24484136

Genome Context

<gbrowseImage1> name=IndicaChromosome01:24477378..24484136 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:24477378..24484136 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCAATGTTTCTGGATTGGAGAACTTCATGAAGGAAGTTAAAATGGGCGAATGTGGGCTTTCATATGCTGTTGTGTCAATAATGGGTCCACAAAGTAGTGGAAAGAGTACACTTTTAAATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGGCATGTTACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCATGCACTCTTGTAATGGATTTGGAAGGCACGGATGGTCGAGAGAGGGGAGAGGATGACACAGCCTTTGAAAAGCAAAGTGCACTGTTTGCTTTGGCTGTTTCAGATATTGTGTTGATCAATATGTGGTGTCATGACATTGGTAGAGAACAGGCTGCGAACAAACCTCTTTTGAAGACTGTTTTCCAGGTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAGACACCTCTGGAAAATCTTGAACCGATTCTAAGGGAAGATATTCAGAAGATATGGGATGGTGTCCCTAAACCCCATGCCCACAAGGAAACTCCACTGAGTGAATTTTTCAATGTCGAAGTTGTGGCCCTATCTAGTTATGAGGAAAAGGAGGAGTTATTCAAAGAGCAGGTTGCCAGTTTAAGAGATAGGTTCCAACAGTCTATTGCTCCTGGTGGACTTGCTGGAGATCGGCGGGGCGTTGTCCCTGCATCTGGTTTCTCTTTCAGTTCACAACAATTTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAGTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGGAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGAGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAGGCACCAACTTGAGTCTAAACTTTTGCAGCTTGTCAACCCTGCATACCAAAATCTTTTGGATCATTTACGGACTAGAACTTTAGAAGCATTTAAGGAGTCCTTTGACAAGTCCCTAGAAAAGGAGGGTTTTGCTGTTGCTGCTCGTGACTGTACTAAGGTTTTCTTGGAGAAGTTTGACAAAGGATCCGAAGATGCTGCTATCCAACAAGTGAAATGGGACCCATCAAAAATTAAGGATAAGCTTAAGCGTGACATTGAGGCGCATGTGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAGCCAGTGAAGAAACCTGGCCAGCAATTAGGAAGCTTCTTCAACGCGAGACAAAATCTGCTGTTTCGGGTTTTGAATCTGCCATGGCATCTTTTGAGCTTGATGAGGTGACTCAGAAAGAATTACTTTCAAAGCTGGAGAGTCATGGAAAGAGCGTTGTTGAATCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTGACAACATTGAGAACACCCTGTCCCTTGCTCTAGTTGACACAGCAAGGCCAGGGACTACAGATAGGAGCATCCAATCGTTCGATCCACTTGCCTCTAGCTCATGGGAAAGGGTTCCAGAGGAGAAAACTTTAATTACACCTGTCCAGTGCAAATCTTTATGGAGGCAATTTAAGGCTGAAACTGAATATACTGTCACACAGGCCATAGCTGCTCAGGAGGCAAATAAGAGGAACAACAACTGGCTGCCACCTCCATGGGCACTTGCCGCAATGGCTATCCTTGGATTCAACGAGTTCATGACATTGTTAAAGAATCCCCTTTACCTGGGAGTCATATTTGTTGTTTTCCTTGTTGGAAAAGCCATGTGGGTACAGCTAGACATTGCCAAGGAGTTCCAAAATGGATTTCTTCCAGCCGTCCTATCACTTTCGACGAAATTCGTTCCCACGATAATGAACATCCTGAAGAGATTAGCTGATGAGGGGCAGAGACCTGCAGCCCCAGAGAGGCAAAGAGAGATGGAACTCCAACCAAAATCCACAAGGAATGGTTCACACAGCAACGTGACATCGGCAGGGTCATCCAGCATAACCTCTTCGGAGAGTGGACCCGAATATTCAAGCCCGATTGCACACTGA</cdnaseq>

Protein Sequence

<aaseq>MDACFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRTNFREMDAFKGRHVTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSIAPGGLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASFTADEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLLQLVNPAYQNLLDHLRTRTLEAFKESFDKSLEKEGFAVAARDCTKVFLEKFDKGSEDAAIQQVKWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETWPAIRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLIRMKDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENTLSLALVDTARPGTTDRSIQSFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVTQAIAAQEANKRNNNWLPPPWALAAMAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQLDIAKEFQNGFLPAVLSLSTKFVPTIMNILKRLADEGQRPAAPERQREMELQPKSTRNGSHSNVTSAGSSSITSSESGPEYSSPIAH</aaseq>

Gene Sequence

<dnaseqindica>1..145#255..328#450..545#1543..1613#1703..1766#1870..1935#2062..2109#2194..2256#2334..2390#2479..2637#2713..2781#2866..2957#3515..3593#4142..4304#4907..5031#5116..5378#5450..5546#5637..5798#5934..6038#6165..6259#6339..6435#6529..6759#ATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCAATGTTTCTGGATTGGAGAACTTCATGAAGGAAGTTAAAATGGGCGAATGTGGGCTTTCATATGCTGTTGTGTCAATAATGGGTCCACAAAGTAGTGGTATGGTGTTTTTTTTTTCCTTTCATCATTTGCTCTATCTGTTTTCAATGAATAATATATTTTATCCCAGCGCCATTGTTCATCAATTCCTTTTTACATTTTTTTCCAGGAAAGAGTACACTTTTAAATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGGCATGTTGTTATTCCTTTCTAGCCTTTAGTTCATGCCTTTTCTCATCAGAAACTTTATTGGCTTTGATGGAATTGGTTCTTATTCTAAATCAAGTTCACTGCCATTTTCTGAATTCTTCAGGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCATGCACTCTTGTAATGGATTTGGAAGGCACGGATGGTCGAGAGAGGGGAGAGGTAATAAAAAAACAATTGTTTTTCCTGATCTGTAGTTGATTGGATTAGATGCCAGTATTAGTGTGACGGGTACATACTTAAGTTTGCTTTACCAATTGTTTGTTGAAACGGAGATTTTTGTGTATCTGATAGTACAGAGTTAAGGAGTGTCCTGTACTAGCAAGGCACCATCCAAATTAGCTAAGCTAATAAACTTAACCCTCCCATTGATTTCATATTTGCATATTTCTGACGTGTAGTTAAACTAGATATGTAGTGGCATAGCTTGTGAAACAATCTTAGTACCATCCATTGCATTTTGGCTTCATCATATAAGCCCACAAGATTAAGCTAAAATTTCCTCATGTGATCCTTTCAACTGCTAATGGGCATCAGGGTTATGTGATGTTTGTTATTTGTTGAGTAACTTGCTCTTGTTCTCCCACCACCTTTTTCCTCTCTTAATGAAATGATATGCAGATTTCCTGCATATTCTAAAAAAAACTTGCTCATGCTGGGTATTTTGATCTAAGTTTCATAAAACACTTGTATTTACTTAATACCATCTTTGGGAAAATTTTTCATAAAGCACTGCATCTGTGATTTTTCTACCTTCCTGCCATTGGCCTTGACTTATTTGTAAACAACAAATGACACATTGTAATAATGATACGTGGACTTTTGGTCCGTGGAGTTAAAATATCAGTGAACTGCCTTACATATCTACTATATGTTTTTTCCTCCCTCATACTTTGAGATTCTTTCCTTACTGCTGGAGACGTCCATTGGAGAAGGCGTGGGTCTTAGATGACTTTGCTATTTAGTAGAGTCTTAATCAAGAACATGCTTTGGAGAGCTGGTGTTTTGTGCTACAATATCTTAAGTGAAATTATGTGATAAATTTGGTGTTCTTGGGTCAAATTACATGATGAAAAGGCACTTTATTGTTTGTTACTTTTTGTTTTTGGTTTGACCTTTTGCCTCACAATAACTCTTTAATTTACTTGTGATGTTTCAGGATGACACAGCCTTTGAAAAGCAAAGTGCACTGTTTGCTTTGGCTGTTTCAGATATTGTGTTGATCAATATGTAAGTTCTGCTGAATGATGTGCGTTGGACCTATTGTTTCCTAAATTGGACAGTGCAATGAGTGAACTTTTAATTATTTTCTTCCATAGGTGGTGTCATGACATTGGTAGAGAACAGGCTGCGAACAAACCTCTTTTGAAGACTGTTTTCCAGGTCAGTTTGTTAGTGCTACAATGTGGGCTTATTTTCTTTGATTCCTGATTCTTCAGTGGTGGAAGATACTATAATATCATTGTGTCTTTGTCAACCTGAATAGGTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAGGTGAGGGCTTGCTAGGGTGCAATTTAGGCTGTTAGTTTCCTGAGAAACTACCAGCAGTCCTACTATGAACTCCAAATCCAAATCTATGTACTGCAACTAACATGTGCCCATTTCGGTTTACAACAGACACCTCTGGAAAATCTTGAACCGATTCTAAGGGAAGATATTCAGAAGGTATGCATTTACTTGAGAGCCCTTTTCCTGTCTGCCTGACCTTTCTTCCATTTTAAATACACTAATCTTTTCGTCTTGCTGCAGATATGGGATGGTGTCCCTAAACCCCATGCCCACAAGGAAACTCCACTGAGTGAATTTTTCAATGTAAAATCCACAATTCAATATTTCTAGTTAATGTTATATTCTATATTTTCTCACTGCCAAGTCTGTTCTCCATGCAGGTCGAAGTTGTGGCCCTATCTAGTTATGAGGAAAAGGAGGAGTTATTCAAAGAGCAGGTTGGCATCGTTAAGCATTAGTTATGAATCTGTGCTTGTTACTGATCTTCTGGAAATTGTATGACTGATAATAAATTAATTTATTTAGGTTGCCAGTTTAAGAGATAGGTTCCAACAGTCTATTGCTCCTGGTGGACTTGCTGGAGATCGGCGGGGCGTTGTCCCTGCATCTGGTTTCTCTTTCAGTTCACAACAATTTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAGTAAGCATCCTTGCCCCTTTCAGTAGCGAGTTATCAAAATTATGCATGCTGACATCTTTTGCGCATTTAATTCAGGTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGGTGATTGCAATACATGTTGTGCTTGACCTACACTAATTTGATCGAAGAAATCAGCTGATACTTTATATGTTTTGTATTTAAAAGGAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGAGTGAGTCATCAGTACTTTGACCAATACTATTTTTTTTAATTCCGGCTATGATATTCCCAAGATTGCATAAGTGATGGGGGACGGTCGGTTACTGCTCTTTACTATTCATACTTTATGGTGTAGGCTAGGTCAATTTGTTCCCCCGCGATGTTGATTCTCACCAACTTTATCTAAGCCAAAAGCATAATAACATGTTTTTGGTATAGTTCTTGGAACCAGCCCATTACTCTAAACCAGTGGAAGCAGGCCCTTATTTAGACTCGTGTTCCTTTTTGCTCTGTGAGAATCAAACTTTTCTTGTCAAGATGGATTAAGTGCTTGCCCAAAATGACTAAGTAGTCTTGAGCTTGGAAACCAAACAACTTTCTTTACAAAAAATAATTTGTATAAAGCACATCAAGTTCAAATGGAACATCGAGAAAACATATTAAATTTGAATTGAGGTTGTAGAATGCACACCAGATTCAAACAAAATTTGTATATAAAGCACATATTGCAATTTTACCTGGTTTGCTAGGCAAGAACAAGCTATGATGGTTTTTTTCTTTAAATTGTAGGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAGGCACCAACTTGAGTCTAAACTTTTGCAGGTTCTTCCATACTTCCTATGAGCTTTTATGTTTGTTTTATCCCATTATAAGTGCCGTCCTCTCTGCACATGATGTTCAACCAAGAGTTGAAATAGGGCCAGTATTAGGTAAGTACCATCGCATACAGAAAATACAGTTAGTTGTAAGAATGACATAAGGGCCTGGGCAAACATGTCGATGATACGTGATGGCATTTTCCAACTTTGAGATCTTTGCCATGGTACCAATCAAGGTTCAATACCATCTTTGTTTACCGTAAATTTGATCTGGAATACAAATCGCAATGTTCATTTCTTGATGACCGATTACAATATCTTCTGAGATAAGTCGAAGAGGGAAAGTGTTTTACAGCAAACTGAAAATTTAATATCAAATCCATGAACTTTGTATTCATTTTCCCGCTAAATTATTTTTTAGGTATATTAATACTGATCCTGTCTCATGTTCTACTATTTTTTTAGTTGTTCTTGTTCCATGTTATTAGTGCATTTATTTACTGATATTATTATCTTGATTTGTTCTTATACCAATGTTTCCTTGCCTTTTAGCTTGTCAACCCTGCATACCAAAATCTTTTGGATCATTTACGGACTAGAACTTTAGAAGCATTTAAGGAGTCCTTTGACAAGTCCCTAGAAAAGGAGGGTTTTGCTGTTGCTGCTCGTGACTGTACTAAGGTTTTCTTGGAGAAGTTTGACAAAGGATCCGAAGGTATGTTTTCAGAATGTTACTTGCATGATATTTTAATCTGGAGAATACTGATCCACTGTTCTAGCTATGTTGGTTACCGGTAAGTTAACCCCGGGTACTTTTGGTTTTATTGCCCTGAACAAGTGGAAGCTAGCTAGATCATTATAACATAAAAAACAATCCAGTTGACATCTTTCAATGCTAAAAAGTCACAAAGTGAACTCTCCAAAAGCAATATATGTTTCGATTCAGTCATCTGCTGAGAGCCCAATTCATTACTAGCTACTCAATATTTTCCTGATGGATCCAATTTCATTATGAAACCTAGTTTTGGTATCTAAAAAAGGACCAGGTACAATTCTTGTTTTTGCATGTGAATTGCACCCAGCTTAGGCAGGGATGAAGCTAGGATTATGAAGGTGGTTAACTACCAAATGAAATAATAACGATTTGCTGCGTTGATGTTTCTGCTTTTTAAACTATAATATTAGCTGGTAATGAACATGAATTTATGAGAAAACTCTTTTGATCAGATGGTATATGTTGCACTCCACTCCTTTTTCTGCACAAATGAATATATGGAGTATCTGATGACAATGATATATTTGTGTATCCATTGACAGATGCTGCTATCCAACAAGTGAAATGGGACCCATCAAAAATTAAGGATAAGCTTAAGCGTGACATTGAGGCGCATGTGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGGTTGCTTATGTTTATCTAATCAAATGGTTGGCAAAGTTATCAAGAGAAACAAGCCATTATCTAATTTGAGATGTGTTATTTTAGGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAGCCAGTGAAGAAACCTGGCCAGCAATTAGGAAGCTTCTTCAACGCGAGACAAAATCTGCTGTTTCGGGTTTTGAATCTGCCATGGCATCTTTTGAGCTTGATGAGGTGACTCAGAAAGAATTACTTTCAAAGCTGGAGAGTCATGGAAAGAGCGTTGTTGAATCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGGTGAGCTGCACACCAAATGTTGATTCAAATGATATGTGTTTTCAGAGACTAATTGGATGAAAAACATGAAGGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTGTATGTCAAATCCTAATATCGTGTCTATTTGAAACACAAATGGATTGGTTCTATAACTAATCCATCAACTTCTCCATTTCTGCGTTACAGTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTGACAACATTGAGAACACCCTGTCCCTTGCTCTAGTTGACACAGCAAGGCCAGGGACTACAGATAGGAGCATCCAATCGTTCGATCCACTTGCCTCTAGCTCATGGGAAAGGGTAAGGAAGCTGTGTGCTATGTTTAATGCTGTCATTTTTGTCTGCCCAAGCGACCCTTTGTTTTTATCCTTATCAGTAACTTCTTTTCAGCATGAACCATATGTTTTGCTAAGTAAATGTCATTTGCACAAGCAGGTTCCAGAGGAGAAAACTTTAATTACACCTGTCCAGTGCAAATCTTTATGGAGGCAATTTAAGGCTGAAACTGAATATACTGTCACACAGGCCATAGCTGCTCAGGTATCCTGTTAATTGAAATCTTTAATTTTCGTTTGGTACTTGAAACATTGTGGAGTGGGATTGACCTATTGGGTATAAAATGATGTATGATTGTATGCCTAACTGTTTTACTTTTTCCTTCATCAGGAGGCAAATAAGAGGAACAACAACTGGCTGCCACCTCCATGGGCACTTGCCGCAATGGCTATCCTTGGATTCAACGAGTTCATGACATTGTTAAAGTATTTTCTTCTGTCTACTGAATCATGCATGAGCATTTGATCGCAGTGTTTGACCGTACTGAGTTCTCTTTAATGGCAGGAATCCCCTTTACCTGGGAGTCATATTTGTTGTTTTCCTTGTTGGAAAAGCCATGTGGGTACAGCTAGACATTGCCAAGGAGTTCCAAAATGGATTTGTAAGTATTGAAGCCACATTGCCATTAGTATATATTTCAAGCTTCCTAAAGAGTTCTCTCCTGATACTTGTTTTTATGCCTGCAATGTTGCAGCTTCCAGCCGTCCTATCACTTTCGACGAAATTCGTTCCCACGATAATGAACATCCTGAAGAGATTAGCTGATGAGGGGCAGAGACCTGCAGCCCCAGAGAGGCAAAGAGAGATGGAACTCCAACCAAAATCCACAAGGAATGGTTCACACAGCAACGTGACATCGGCAGGGTCATCCAGCATAACCTCTTCGGAGAGTGGACCCGAATATTCAAGCCCGATTGCACACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA003813