BGIOSGA017435

From RiceWiki
Revision as of 16:14, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA017435

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA017435, complete gene.

LocusTag

OsI_21242

Ensembl Transcript ID

BGIOSGA017435-TA

Ensembl Protein ID

BGIOSGA017435-PA

Length

4017

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:31018962..31022978

Sequence Coding Region

31020808..31022978,31020307..31020761,31018962..31019392

Genome Context

<gbrowseImage1> name=IndicaChromosome05:31018962..31022978 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:31018962..31022978 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTCTGCGGCCTCAGCTTGTGCCTCCGCTGCTCTCCCACCGCCGCCGCCTTGTCATACCTCTGCTTGTCTTGCTCCTCGCCGCCGCCGCCAGCGACGAGCAGCTGCTAAGCCTGCGTGGGCAGGCTGCTGTCCTTGTGTCCATCAAAGACGCCTTCTCCCCGCCTCTCCCGACGCCATTGCGCACTACCTGGAGCATCGCCAACGACGCCTCTCTCTGCTCCTCGTGGCATGCCGTCCGCTGCGCCCCCGACAACCGCACCGTCGTCTCCCTCGACCTCTCCGCCCACAACCTCTCCGGCGAGCTCTCCTCTGCCATCGCCCACCTCCAGGGCCTCCGCTTCCTCTCCCTCGCCGCCAACTCCCTGGCCGGCGACCTACCGCCCACCATCGCCGCCCTCCGGCACCTGCGCTACCTCAACCTCTCCAACAACCAGTTCAACGGCACCCTCCACTACTACTTGTCCACCATGAACAGCCTCGAGGTCCTGGACGTCTACGACAACGACCTCTCCGGCCCGCTCCCGCTCCCGGACACCAACAGCAACCTCCGCCACCTCGACCTCGGTGGCAACTTCTTCTCCGGCAGCATCCCGACCAGCTTCGGCCGCCTGCAGGCCATCCAGTTCCTCTCGGTCGCCGGCAACAGTCTCAGCGGCCGCATCCCGCCGGAGCTCGGCAACCTCACCGCCCTGCGCCAGCTCTACCTGGGCTACTACAACCAGTTCGACGGCGGCATCCCCGCGTCGCTGGGCCGCCTCGCCAGCCTGGTGCACCTGGACCTGGCCAGCTGCGGACTGCAGGGGGAGATACCGCCGTCGCTGGGAGGCCTCGCCAACCTCGACACGCTCTACCTGCAGACCAACCAGCTGAACGGCACCATCCCGCCCGCGCTCGCCAACCTCACCGCTCTCAGGTTCCTCGACGTCTCCAACAACGCGCTCACCGGCGAGATCCCGCCCGAGCTCGCCGCGCTCACCCACCTCCGCCTCCTCAACATGTTCATCAACCGCTTCCGTGGCGGCATCCCGGAGTTCATCGCCGACCTCCGCTCGCTCCAGGTCCTCAAGCTCTGGCAGAACAACTTCACCGGCTCCATCCCCGGGGCTCTCGGCCGCGTCGCGCCGCTCCGTGAGCTGGACCTGTCCACCAACAGGCTCACCGGCGAGGTGCCGCGCTGGCTGTGCGCGCTCCGCAAACTCGACATCCTCATCCTCCTCGACAACTTCCTCTTCGGCCCGGTGCCGGAGGGGCTCGGCGCGTGCCGGACGCTCACGCGGGTGCGCCTGGCCCGGAACTACCTCACCGGCCCGCTCCCGCGCGGCTTCCTCTACCTGCCGGCGCTCACCACGCTGGAGCTGCAGGGCAACTACCTGACGGGGCAGCTCCATAATGAGGATGAGGACGCTGGCAGCCCGCTGTCTTTGCTCAATCTCTCCGGCAACAGGCTCAACGGCTCCCTCCCGGCCTCCATCGGCAACTTCTCCTCCCTGCAGACGCTCCTGCTCAGCGGCAACCACTTCACCGGCGAGATCCCGCCTGAGGTTGGCCAGCTGAGGCGGCTGCTGAAGCTGGACCTGAGCGGCAACAACCTGAGCGGCGAGGTCCCTGGCGAGGTCGGCGAGTGCGCGTCGCTGACGTACCTAGACCTGAGCGCGAACCAGCTGTGGGGCGCCATGCCAGCGCGGGTGGTGCAGATCAGGATGCTCAACTACCTCAACGTGTCGTGGAACAAGCTCAACGGCAGCATCCCCGCGGAGATGGGCAGCATGAAGAGCCTCACCGACGCCGATCTCTCCCACAACGACTTCTCCGGCCACGTGCCCCACAACGGGCAGTTCGCCTACTTCAACGCGTCGTCCTTCGCGGGCAACCCGCGGCTGGTGCTGTGCGGCACGCCCGCCCCCGGCCCCGCCCCCGGGACGACGACGCCTGGCAGCGGGGGGGACGGGCGGGCGCCGGTGATGTGGCTGGCGGCGGCGCTGGGGCTGCTGGCTTGCTCGGTGGCGTTCGCGGCGGCGGCGGTGGCGACGACGCGATCGGCGATTGAGCGGAGGCGGCGGTCGGGGTGGCAGATGAGGGCGTTCCAGAAGGTGCGGTTCGGATGCGAGGACGTGATGCGGTGCGTGAAGGAGAACAGCGTGGTGGGGCGTGGCGGGGCTGGGGTGGTGATCGTCGACGGTGGGTTCTCGGCGGAGGTGCAGACGCTGGGGAGGATCCGGCACCGCCACATCGTGCGGCTGCTGGCCATGTGCTGGAGCGCGGAGGCGAAGCTGCTGGTGTACGAGTACATGGCCGGGGGGAGCCTGGGCGACGCGCTGCACGGCCACCACCGGCACCACGACGAGTACGACGACGATGGCAGCAATACTAATATTATTGGGTCGTTGTTGTTGCCGTGGGCGGCGCGTCTTCGTGTGGCGACGGAGGCCGCCAAGGGGCTGTGCTACCTGCACCACGACTGCTCCCCTCCCATCCTCCACCGCGACGTCAAGTCCAACAACATCCTTCTCGACGCCCGCCTGGAGGCGCACGTCGCCGACTTCGGCCTCGCCAAGTACCTGCGCGCCGGCGCCTCCGAGTGCATGTCCGCCATCGCCGGCTCCTACGGCTACATCGCGCCAGAGTATGCATACACGCTGAAGGTGGACGAAAAGAGCGACGTTTACAGCTTTGGGGTGGTGCTGCTGGAGCTGATAACGGGGCAAAAACCGGTGGGAGAGCACCTGCAGCTGCATCAAGAGGAGGAGGAGGAGGAAGCAAATACGACGACGACGGTGGTGGACCTGGTGCAGTGGGTGCGGGCACGCTGCGGCAGCGGCAAGGACGGAGTGTGGCGCGTCCTCGATCGGCGGCTGGGCGGCGACGTGCCGGCAGCGGAGGCCACGCACATGTTCTTCGTGGCGATGCTGTGCGTGCAGGAGCACAGCGTCGAGCGCCCCACCATGCGCGAGGTCGTGCAGATGCTCGAGCAGGCAAAGCAGCAGCTCAGCCGCTGCCACCCTCCTCCTCCTCCTCCAACATCCACGTCGATCGACCATGCATGCATGATATAA</cdnaseq>

Protein Sequence

<aaseq>MALRPQLVPPLLSHRRRLVIPLLVLLLAAAASDEQLLSLRGQAAVLVSIKDAFSPPLPTPLRTTWSIANDASLCSSWHAVRCAPDNRTVVSLDLSAHNLSGELSSAIAHLQGLRFLSLAANSLAGDLPPTIAALRHLRYLNLSNNQFNGTLHYYLSTMNSLEVLDVYDNDLSGPLPLPDTNSNLRHLDLGGNFFSGSIPTSFGRLQAIQFLSVAGNSLSGRIPPELGNLTALRQLYLGYYNQFDGGIPASLGRLASLVHLDLASCGLQGEIPPSLGGLANLDTLYLQTNQLNGTIPPALANLTALRFLDVSNNALTGEIPPELAALTHLRLLNMFINRFRGGIPEFIADLRSLQVLKLWQNNFTGSIPGALGRVAPLRELDLSTNRLTGEVPRWLCALRKLDILILLDNFLFGPVPEGLGACRTLTRVRLARNYLTGPLPRGFLYLPALTTLELQGNYLTGQLHNEDEDAGSPLSLLNLSGNRLNGSLPASIGNFSSLQTLLLSGNHFTGEIPPEVGQLRRLLKLDLSGNNLSGEVPGEVGECASLTYLDLSANQLWGAMPARVVQIRMLNYLNVSWNKLNGSIPAEMGSMKSLTDADLSHNDFSGHVPHNGQFAYFNASSFAGNPRLVLCGTPAPGPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERRRRSGWQMRAFQKVRFGCEDVMRCVKENSVVGRGGAGVVIVDGGFSAEVQTLGRIRHRHIVRLLAMCWSAEAKLLVYEYMAGGSLGDALHGHHRHHDEYDDDGSNTNIIGSLLLPWAARLRVATEAAKGLCYLHHDCSPPILHRDVKSNNILLDARLEAHVADFGLAKYLRAGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGQKPVGEHLQLHQEEEEEEANTTTTVVDLVQWVRARCGSGKDGVWRVLDRRLGGDVPAAEATHMFFVAMLCVQEHSVERPTMREVVQMLEQAKQQLSRCHPPPPPPTSTSIDHACMI</aaseq>

Gene Sequence

<dnaseqindica>1..2171#2218..2672#3587..4017#ATGGCTCTGCGGCCTCAGCTTGTGCCTCCGCTGCTCTCCCACCGCCGCCGCCTTGTCATACCTCTGCTTGTCTTGCTCCTCGCCGCCGCCGCCAGCGACGAGCAGCTGCTAAGCCTGCGTGGGCAGGCTGCTGTCCTTGTGTCCATCAAAGACGCCTTCTCCCCGCCTCTCCCGACGCCATTGCGCACTACCTGGAGCATCGCCAACGACGCCTCTCTCTGCTCCTCGTGGCATGCCGTCCGCTGCGCCCCCGACAACCGCACCGTCGTCTCCCTCGACCTCTCCGCCCACAACCTCTCCGGCGAGCTCTCCTCTGCCATCGCCCACCTCCAGGGCCTCCGCTTCCTCTCCCTCGCCGCCAACTCCCTGGCCGGCGACCTACCGCCCACCATCGCCGCCCTCCGGCACCTGCGCTACCTCAACCTCTCCAACAACCAGTTCAACGGCACCCTCCACTACTACTTGTCCACCATGAACAGCCTCGAGGTCCTGGACGTCTACGACAACGACCTCTCCGGCCCGCTCCCGCTCCCGGACACCAACAGCAACCTCCGCCACCTCGACCTCGGTGGCAACTTCTTCTCCGGCAGCATCCCGACCAGCTTCGGCCGCCTGCAGGCCATCCAGTTCCTCTCGGTCGCCGGCAACAGTCTCAGCGGCCGCATCCCGCCGGAGCTCGGCAACCTCACCGCCCTGCGCCAGCTCTACCTGGGCTACTACAACCAGTTCGACGGCGGCATCCCCGCGTCGCTGGGCCGCCTCGCCAGCCTGGTGCACCTGGACCTGGCCAGCTGCGGACTGCAGGGGGAGATACCGCCGTCGCTGGGAGGCCTCGCCAACCTCGACACGCTCTACCTGCAGACCAACCAGCTGAACGGCACCATCCCGCCCGCGCTCGCCAACCTCACCGCTCTCAGGTTCCTCGACGTCTCCAACAACGCGCTCACCGGCGAGATCCCGCCCGAGCTCGCCGCGCTCACCCACCTCCGCCTCCTCAACATGTTCATCAACCGCTTCCGTGGCGGCATCCCGGAGTTCATCGCCGACCTCCGCTCGCTCCAGGTCCTCAAGCTCTGGCAGAACAACTTCACCGGCTCCATCCCCGGGGCTCTCGGCCGCGTCGCGCCGCTCCGTGAGCTGGACCTGTCCACCAACAGGCTCACCGGCGAGGTGCCGCGCTGGCTGTGCGCGCTCCGCAAACTCGACATCCTCATCCTCCTCGACAACTTCCTCTTCGGCCCGGTGCCGGAGGGGCTCGGCGCGTGCCGGACGCTCACGCGGGTGCGCCTGGCCCGGAACTACCTCACCGGCCCGCTCCCGCGCGGCTTCCTCTACCTGCCGGCGCTCACCACGCTGGAGCTGCAGGGCAACTACCTGACGGGGCAGCTCCATAATGAGGATGAGGACGCTGGCAGCCCGCTGTCTTTGCTCAATCTCTCCGGCAACAGGCTCAACGGCTCCCTCCCGGCCTCCATCGGCAACTTCTCCTCCCTGCAGACGCTCCTGCTCAGCGGCAACCACTTCACCGGCGAGATCCCGCCTGAGGTTGGCCAGCTGAGGCGGCTGCTGAAGCTGGACCTGAGCGGCAACAACCTGAGCGGCGAGGTCCCTGGCGAGGTCGGCGAGTGCGCGTCGCTGACGTACCTAGACCTGAGCGCGAACCAGCTGTGGGGCGCCATGCCAGCGCGGGTGGTGCAGATCAGGATGCTCAACTACCTCAACGTGTCGTGGAACAAGCTCAACGGCAGCATCCCCGCGGAGATGGGCAGCATGAAGAGCCTCACCGACGCCGATCTCTCCCACAACGACTTCTCCGGCCACGTGCCCCACAACGGGCAGTTCGCCTACTTCAACGCGTCGTCCTTCGCGGGCAACCCGCGGCTGGTGCTGTGCGGCACGCCCGCCCCCGGCCCCGCCCCCGGGACGACGACGCCTGGCAGCGGGGGGGACGGGCGGGCGCCGGTGATGTGGCTGGCGGCGGCGCTGGGGCTGCTGGCTTGCTCGGTGGCGTTCGCGGCGGCGGCGGTGGCGACGACGCGATCGGCGATTGAGCGGAGGCGGCGGTCGGGGTGGCAGATGAGGGCGTTCCAGAAGGTGCGGTTCGGATGCGAGGACGTGATGCGGTGCGTGAAGGAGAACAGCGTGGTGGGGCGTGGCGGGGCTGGGGTGGTGTACGCCGGGGAGATGCCCGGCGGGGAGTGGGTGGCGGTGAAGCAGGATCGTCGACGGTGGGTTCTCGGCGGAGGTGCAGACGCTGGGGAGGATCCGGCACCGCCACATCGTGCGGCTGCTGGCCATGTGCTGGAGCGCGGAGGCGAAGCTGCTGGTGTACGAGTACATGGCCGGGGGGAGCCTGGGCGACGCGCTGCACGGCCACCACCGGCACCACGACGAGTACGACGACGATGGCAGCAATACTAATATTATTGGGTCGTTGTTGTTGCCGTGGGCGGCGCGTCTTCGTGTGGCGACGGAGGCCGCCAAGGGGCTGTGCTACCTGCACCACGACTGCTCCCCTCCCATCCTCCACCGCGACGTCAAGTCCAACAACATCCTTCTCGACGCCCGCCTGGAGGCGCACGTCGCCGACTTCGGCCTCGCCAAGTACCTGCGCGCCGGCGCCTCCGAGTGCATGTCCGCCATCGCCGGCTCCTACGGCTACATCGCGCCAGGTATAAGCTTACTACTCCTACTAGGCAGCTTTCAATCTTTGACCGACTAAAATTAAGGGTATGTTTGGTAGAACTTTAACTCCTAAATTTTGCTATAAAAGTTAGGTCTGGTGTGGAGTTGACTAAATCCAGCTCCACCTCTCTAGTTTATTTTATAAGAGAGCTCTATCAAACTCTGTTTCTATTTTTGGTAGAGCTGAAACTATTTGGCTGGGCTCCAGTTCTAAAAGAGATGGAAAGCTGAAGCTGTGACAAACAGTCCCTTACTCCACTACTCTAGACTCCAGCTACTAGCTAGACGGACCAATCATGCATCCATCCAGCATTCCATATTGGACGGACGTTGGTGGTGTAGTGTACTAGTCGTCGTACGTGGTGCTAATCTCCTCTCCTACTACAGTTATTATTATTATTAGGGTGTGCGCATTCTTTTCTTTCCATGCAAGCATGTACTCCGTACTGTGTGTCACCACACCACATTTGGCCTGCACTGCATCTGCATGCCATTGCCAGCCAAAGGAAACCAAGCAGCAGCCCTCTGCTGCGTCTGATGATGACTAGACTCCTCAAAGGACGAGCCTTTCTTTCTTTTTCTTTTCTTTGCTGCATAGTAGTACGGATGCATGCATGGATCGACTGAATCTTTCGCTTTCGCTTTTACTTTTACTGCTAGTACATGTCTTGCGGTTGATGATTTGCCTCAATGAGTCGTCCTCCTATCCTACCTAGACAAGCGATGCGATGCGGCGGCAGCAGAACAACAAAGCCTTGTTTGCTTTTAAACAGAGTCTAAAAAGAATGAACAAAGTCTCTTTTCATTTGGTCTTTCTTCTTCACAAAGCATATGCTCCTCTTTTAGTTAGTTTTTTTTAAATTTCTGCTGATTAATTGAGTATATAAATGTGCTTTTGCAGAGTATGCATACACGCTGAAGGTGGACGAAAAGAGCGACGTTTACAGCTTTGGGGTGGTGCTGCTGGAGCTGATAACGGGGCAAAAACCGGTGGGAGAGCACCTGCAGCTGCATCAAGAGGAGGAGGAGGAGGAAGCAAATACGACGACGACGGTGGTGGACCTGGTGCAGTGGGTGCGGGCACGCTGCGGCAGCGGCAAGGACGGAGTGTGGCGCGTCCTCGATCGGCGGCTGGGCGGCGACGTGCCGGCAGCGGAGGCCACGCACATGTTCTTCGTGGCGATGCTGTGCGTGCAGGAGCACAGCGTCGAGCGCCCCACCATGCGCGAGGTCGTGCAGATGCTCGAGCAGGCAAAGCAGCAGCTCAGCCGCTGCCACCCTCCTCCTCCTCCTCCAACATCCACGTCGATCGACCATGCATGCATGATATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA017435