BGIOSGA009986

From RiceWiki
Revision as of 15:32, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA009986

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA009986, complete gene.

LocusTag

OSJNBB0017F17.16

Ensembl Transcript ID

BGIOSGA009986-TA

Ensembl Protein ID

BGIOSGA009986-PA

Length

3178

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:32136773..32139950

Sequence Coding Region

32139738..32139950,32139496..32139604,32139305..32139369,32139163..32139201,32138940..32139036
,32138747..32138843,32138572..32138638,32138411..32138487,32138168..32138246
,32138018..32138097,32137853..32137922,32137670..32137738,32137515..32137582
,32137372..32137420,32136773..32137159

Genome Context

<gbrowseImage1> name=IndicaChromosome03:32136773..32139950 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:32136773..32139950 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGACGCGGCCGCGGTCCTCCCCGTCGTTCTTCGGCGGCCTCCGGGCACGCGAGCTCGGCGGCGGCAGGGTGCCACTGCCACGCGCCTCCGCGGCGCGGCTCCCCTACCTCGCGGACCTCTCCTCCGACCCCGGCGGCCGCGGGAGCGGGGTCATCGCCGTCGAGCACGCCGGCGACCCCGCCATACCTTTCGCCATCTCCTTCTGCAAGGCGGAGCAGATCTCTCACCTTCTGGCGGTAGCTGATGAGGACGGGTATGTTGGCATCTACGACACCCGCCGGCGCCTCCCATCCAGCTCATCGTCATTGGAGAAATCAGCTGAAACGAAGATGTCCGATTGGGTTGCCCACAACAATGCCATCTTTGATGTGTGCTGGATCAAGGACGGTTCCCAATTACTGACTGCATCAGGCGATCAGACTGTGAAAATATGGTCTGTGGAAAACAAGAAATGCCTTGGTGTTCTGTCAGGGCACACCGGGAGTGTGAAGTCGCTGTCATGCCATTCTTCAAACCCAGAGCTCATTGTTACTGGATCAAGGGATGGTTCTTTTGCTCTTTGGGATCTAAGAATCGACCCAAAAACCCCTAATGGTCACCGTGAAGCTTGTCTCATGTCTTCCCTTGTTGTCAAACAAGCACACAGTCCCACACAAAGAAATCGAACAAGGTCTAGAGCAAAGGCTGCTTCGACGAGTATCACATCTGTTCTTTATTTGAAGGATGATATCTCCATTGCTACTTCTGGGGCTGCAGACAACATTGTGAAGATATGGGATACGCGAAATATCAAATTGTCTCTCTCCAACAGAAGCTCTCAAGCAGCAATGCAACCTTTGGAGGGTGTGAAACATGGGATCTCTTGCTTGTCTCAAGACTCATATGGTGCCTATATTGCTGCGTCATGCATGGATAACAGTGCTCTTCATATGGATAAAGGCCCAATTAAGGCTTACACTGGCAGCAAAATTGAATCTTTTTTTGTCAAGTCTGCTATCAGCCCTGATGGAACTCACATTCTTGGTGGTTCGAGTGATGGCAACGTGTACTTATGGCAGGTGGATCAGCCTGAAAGAGGTCCTATAATTTTGGAAGGCCATGAAGGTGAAGCTACTTCAGTTGACTGGTGTGCATCAGAGGTCGGGAAGATCGCAACGTCATCTGATGATTCCAAGGTTCGCGTATGGAATACTGAGAGAAGGGTGTTCCCAAACACAAGTTCCCCAACGGTCATCCGCAAGAGAATAACCGCACCAAACACTGGAAGCCGGTCTGCTAGCCATGAGCTAGCTACTACCTCAAGAGATGTAGGAGTAGCAGCCTGCACCAGTGCAGATGGTGAATTGCCAACTGGTTCACGCTCTCCCCTTCAGCCCAGAGTACTGGAGTTTGGCACACCGGAGTCAGCGAAGAAGAGAGCCTTTAGGTTGTTTCAGGAGGACTCATTGGACATAAGGAAAAGCCCAGAGGCTCAAATGAACAGCCCTTCTTCGGTTCTAAGCCCCCCACATTCACTGAAGAGGAGAACAATTCGGGACTACTTTGCTGGTAGCTCATCTTGA</cdnaseq>

Protein Sequence

<aaseq>MATRPRSSPSFFGGLRARELGGGRVPLPRASAARLPYLADLSSDPGGRGSGVIAVEHAGDPAIPFAISFCKAEQISHLLAVADEDGYVGIYDTRRRLPSSSSSLEKSAETKMSDWVAHNNAIFDVCWIKDGSQLLTASGDQTVKIWSVENKKCLGVLSGHTGSVKSLSCHSSNPELIVTGSRDGSFALWDLRIDPKTPNGHREACLMSSLVVKQAHSPTQRNRTRSRAKAASTSITSVLYLKDDISIATSGAADNIVKIWDTRNIKLSLSNRSSQAAMQPLEGVKHGISCLSQDSYGAYIAASCMDNSALHMDKGPIKAYTGSKIESFFVKSAISPDGTHILGGSSDGNVYLWQVDQPERGPIILEGHEGEATSVDWCASEVGKIATSSDDSKVRVWNTERRVFPNTSSPTVIRKRITAPNTGSRSASHELATTSRDVGVAACTSADGELPTGSRSPLQPRVLEFGTPESAKKRAFRLFQEDSLDIRKSPEAQMNSPSSVLSPPHSLKRRTIRDYFAGSSS</aaseq>

Gene Sequence

<dnaseqindica>1..213#347..455#582..646#750..788#915..1011#1108..1204#1313..1379#1464..1540#1705..1783#1854..1933#2029..2098#2213..2281#2369..2436#2531..2579#2792..3178#ATGGCGACGCGGCCGCGGTCCTCCCCGTCGTTCTTCGGCGGCCTCCGGGCACGCGAGCTCGGCGGCGGCAGGGTGCCACTGCCACGCGCCTCCGCGGCGCGGCTCCCCTACCTCGCGGACCTCTCCTCCGACCCCGGCGGCCGCGGGAGCGGGGTCATCGCCGTCGAGCACGCCGGCGACCCCGCCATACCTTTCGCCATCTCCTTCTGCAAGGTGAGCGAGCCTGGGATCTTTTGTCCCCCCTTCGTTTTCATGCGTTTTTTTTCCCGATTCCGACATCGAAAGGGTTAAGATTTGATGGGAACTGATTGTTCGATGAACCCTCGCATTTTTTTTTTCATTTCAGGCGGAGCAGATCTCTCACCTTCTGGCGGTAGCTGATGAGGACGGGTATGTTGGCATCTACGACACCCGCCGGCGCCTCCCATCCAGCTCATCGTCATTGGAGAAATCAGGTTCGATTGGATCCCCCCTCTTTGATCTAGTTTTCGCACTGTTCGATTCAGTTCGTGGATGTCTGGGGCCACGCACTGGGTGTCATGTTCGATTCGTTCCGGTCTGAAACCGTGACATTCTCGCAGCTGAAACGAAGATGTCCGATTGGGTTGCCCACAACAATGCCATCTTTGATGTGTGCTGGATCAAGGTAACACCTGTTACTCTCAATCATTGAAACATGTTAGAGTTAGTGGTATAAAAGCCAATCCTCACTCACTTGTATCATCTTCTTTTTGGCGTTGTTTATTTAGGACGGTTCCCAATTACTGACTGCATCAGGCGATCAGACTGTAAGTATCGCAATAAGATCATTTTTCAGAAGTAGAATAGAATTGTTTGTTTGTTCTGCATTACAATTCATATTAATGTGATGGTGGACTGCCTTTTGATCATTGGGATTGTTTGTTCTGTATCAGGTGAAAATATGGTCTGTGGAAAACAAGAAATGCCTTGGTGTTCTGTCAGGGCACACCGGGAGTGTGAAGTCGCTGTCATGCCATTCTTCAAACCCAGGTTGGTGTTATGTTGGGAAACAAAAAATCAATTCTTCGTATATTTGTGCCTGTAAAATTTGCCAGGAACTTGTATTCAAGAACTTATTCACTGCAGAGCTCATTGTTACTGGATCAAGGGATGGTTCTTTTGCTCTTTGGGATCTAAGAATCGACCCAAAAACCCCTAATGGTCACCGTGAAGCTTGTCTCATGTATGTTGCCTTGGCTGTTGCAATCTAAATTTCCCCTTTCAACTACAGTGATACAGAAATAACAAATTACTATATTTATAACTCTGTTTGGAATGTGACACATGCTAGGTCTTCCCTTGTTGTCAAACAAGCACACAGTCCCACACAAAGAAATCGAACAAGGTCTAGAGCAAAGGTATTGAATTTGCATGGATTTGCTTTTGCTGGGTATGATCATACATCCTACTGTGGTCAACTTGCTGACGCTGGTAATTTTTAGGCTGCTTCGACGAGTATCACATCTGTTCTTTATTTGAAGGATGATATCTCCATTGCTACTTCTGGGGCTGCAGACAAGTATGTCATTCCCCATTCATTTCATTCTTATAGTTCAAAAGTCATGATGTGTTGTCTGTGGTATTACATTTGAATACGAACATGATCACTTTGAATACAATTTACCTCATTTTTGTGTAACTCTGTCCAAATATTAATGTTCCACTTTCAATAATGTCTGCCAGCATTGTGAAGATATGGGATACGCGAAATATCAAATTGTCTCTCTCCAACAGAAGCTCTCAAGCAGCAATGCAACCTTTGGTAAGCAGCTAACAATCACTACGCAATATGTTTGTAGCCCAATTTCAAGACTTACCGATCATTTGTGCAGGAGGGTGTGAAACATGGGATCTCTTGCTTGTCTCAAGACTCATATGGTGCCTATATTGCTGCGTCATGCATGGATAACAGGTATAACCGCAATCAACCACACTGCCTCAGACTTAATATGCCATTTGTGAAGGCTGCCTTTGACTTTATAAGCCTTTCAGGATCTATTTGTACAGTGCTCTTCATATGGATAAAGGCCCAATTAAGGCTTACACTGGCAGCAAAATTGAATCTTTTTTTGTCAAGGTCAGTGAGTGAACAAGCTGAGTTGATTTCCATTTTTCAAACCGCATGCCTGCTTGTTCTTAGGTAGTTTTATCTGCTATGTTTTATAACACCTGATATGTTGGTCAAATGCAGTCTGCTATCAGCCCTGATGGAACTCACATTCTTGGTGGTTCGAGTGATGGCAACGTGTACTTATGGCAGGTAGTTGTTGGATCATGTTATCATTTCACACACGCATTAGCTGCTCTTTTACTTTCTATTCATGCCACTACTTTTTCACTGACATAGGTGGATCAGCCTGAAAGAGGTCCTATAATTTTGGAAGGCCATGAAGGTGAAGCTACTTCAGTTGACTGGTATGTTCTACATACAATTGTAGTTTTTTTTTTGTGGAAATCTTATCAACCATCCAATGTTCAGATTTCAGTACGATTTTTTCACAATTTTCAGGTGTGCATCAGAGGTCGGGAAGATCGCAACGTCATCTGATGATTCCAAGGTGAGTCTATGTGATTAACCTTGCAAATTTTGTTCATTCAACTTTCATGAATCTTATGAGAATGAGATCCTTTTCTTTTTCTATTACACACCTACATGTTGCAAGCGAATTTAAATGCCTGTTTTGGTATGTAGAAAGGGGAGCTGCTGATATTCAGTATTTTTTTTTAAGAAAACCACTGATAACAACACTTTATGATGTGTATCTATCAGGTTCGCGTATGGAATACTGAGAGAAGGGTGTTCCCAAACACAAGTTCCCCAACGGTCATCCGCAAGAGAATAACCGCACCAAACACTGGAAGCCGGTCTGCTAGCCATGAGCTAGCTACTACCTCAAGAGATGTAGGAGTAGCAGCCTGCACCAGTGCAGATGGTGAATTGCCAACTGGTTCACGCTCTCCCCTTCAGCCCAGAGTACTGGAGTTTGGCACACCGGAGTCAGCGAAGAAGAGAGCCTTTAGGTTGTTTCAGGAGGACTCATTGGACATAAGGAAAAGCCCAGAGGCTCAAATGAACAGCCCTTCTTCGGTTCTAAGCCCCCCACATTCACTGAAGAGGAGAACAATTCGGGACTACTTTGCTGGTAGCTCATCTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA009986