BGIOSGA013123

From RiceWiki
Revision as of 15:48, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA013123

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA013123, complete gene.

LocusTag

OsI_12612

Ensembl Transcript ID

BGIOSGA013123-TA

Ensembl Protein ID

BGIOSGA013123-PA

Length

3807

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:26970326..26974132

Sequence Coding Region

26970326..26970517,26971274..26971328,26971465..26973247,26973364..26973667,26973857..26974132

Genome Context

<gbrowseImage1> name=IndicaChromosome03:26970326..26974132 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:26970326..26974132 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCACAGCGGCGTCAATGGCTGCTGCCCGCTTCGGCTCCCCGCCGCCGCCGCTGTCCACGGCCGCCGGATCCCGCCGCTGCTGCCCCCACGGGGGGCGTGGCCGGGTTGTATCGCCGCGCCGGCGCTGCACAGGAAGCCCGGCCGCGGCGGCGGCGGCGCGCTCTCCAGCTGCAGGCGAGCATCGCATCATGAGAAGTTACAGGTTGCTGCACTGCCATCCAAAGCTACACTCGAGTTTGAACATGGTGTCTCACTTCGAAGTGCATATATTGTTCCTGAAGATGTTCAAGCTGCAGGGTTCCAGATTGATGCTGATGAACTAGCATCTATTGTTGAAAGTCGCGACACTAAAAAGTTGACTGTGCATGCCCAATTAAATGGGATCGCAGACAAATTAGGAACATCATTAACCAATGGTATAGTTACAGACAAGGACCTCTTGAATCAAAGGCAGGACATATATGGAGTAAATAAGTTTGCTGAGACCGAGATTCGCAGCTTTTGGGAGTTTGTATGGGAAGCACTGGAAGACACAACCCTTATAATTCTTAGTGCGTGTGCTATTTTCTCTTTGGTTGTTGGCATAACCACAGAAGGATGGCCACAAGGAGCCCATGATGGCGTTGGCATTGTTGCAAGTATCCTCCTTGTTGTTTCTGTTACCGGAACAAGTAACTATCAGCAGTCCTTGCAATTCAGGGACCTTGACAAGGAGAAAAGGAAAATTCTTGTTCAAGTCACAAGGAATGGCTTGAGACAAAGAGTACTGATAGATGACCTTCTTCCTGGTGATGCTGTCCATCTTGCTGTTGGAGATCAGGTTCCTGCAGATGGCCTATTTATTTCTGGGTTTTCTGTGTTGGTCGATGAGTCTAGTCTAACTGGGGAGAGTGAACCTGTTTTTGTAAACGAAGATAACCCTTATCTTTTATCAGGGACGAAAGTGCTTGATGGGTCCTGCAAAATGCTGGTTACAGCAGTTGGGATGAGAACACAATGGGGCAAATTAATGGCTGTTCTTACTGATGGTGGGGATGATGAAACTCCACTTCAAACCAGACTTAATGGAGTTGCGAATACTATTGGGAAAATTGGTCTATTTTTTGCTGTATTGACTTTCATTGTCCTCTCACAAGGGATAATTGGCCAGAAATACCTTGACGGGCTTCTTTTGAGTTGGTCCGGAGATGATGTGCTAGAGATATTGGATCATTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTACCTGAGGGATTGCCATTGGCAGTCACTTTGAGCCTTGCATTTGCAATGAAGAAAATGATGAATGACAAGGCACTTGTTCGACAGTTGGCTGCCTGTGAAACCATGGGCTCTGCCACAGTCATTTGCAGTGACAAGACAGGAACACTGACAACAAACCGCATGACTGTTGTAAAAGCCTGCATCTGTGGGAATACCATACAAGTTAACAATCCACAGACTCCAAACATGTCTTCCAATTTCCCAGAAGTTGCTGTAGAAACTCTTCTGGAGTCCATATTTAACAACACCAGTGGCGAAGTGGTGACTAACCAAGATGGGAAGTATCAAATACTAGGCACCCCTACTGAGACAGCTTTGTTGGAGTTTGCACTGTTGCTAGACGGAGATTGCAAAGAAAAGCAACTGGGAAGTAAGATTGTTAAAGTGGAACCTTTTAATTCAACCAAAAAGAGGATGAGTACCATTCTTGAGCTTCCTGGTGGAGGATATCGTGCACATTGTAAAGGTGCTTCAGAAATAGTATTGGCTGCATGTGATAAGTTTATTGATGAAAGAGGTTGTATTGTCCCCCTTGATGATAAAACTTCCAGTAAGCTCAATGATATAATCAAAGCCTTTTCTAGTGAAGCGCTCAGAACACTTTGCCTTGCTTATAGGGAAATGGAAGAAGGGTTTTCTACTCAAGAGCAAATACCGTTACAAGGATACACTTGCATCGGCATTGTTGGTATTAAAGATCCTGTTCGTCCAGGTGTCAGGCAGTCTGTGGCAACTTGCCGGGGAGGGGATGCTCCACTTACAGCTGTACAACTTCTTTGGGTCAACATGATCATGGATACCCTAGGGGCGCTTGCACTAGCCACCGAACCACCTAACAATAACTTGATGAAGAAAGCACCGGTAGGAAGGAAAGGGAAGTTCATCACGAATGTGATGTGGAGGAACATTGTGGGGCAGTCGTTATACCAATTCGCTGTCATGTGGTATCTACAAACTCAAGGGAAACACTTGTTTGGGCTGGAAGGCTACCATGCTGATATTGTACTAAATACAATCATATTCAACACTTTGGTCTTCTGCCAGGTGTTCAATGAAATAAGCTCAAGAGAGATGGAGGACATCAACGTTCTGAGGGGCATGGCAGGGAACTCCATTTTCCTTGGTGTCCTCACCGGCACCATCTTCTTCCAGTTCATCCTAGTCCAGTTCCTGGGCGATTTCGCTAACACCACACCTCTGACCCAGCAACAGTGGCTCATCAGCATACTCTTCGGCTTCCTTGGGATGCCCATTGCTGCTGCCATCAAGTTGATTGCTGTAGAACCTCATGAAAAAGCCGATACACGTAGAACGCCGTAA</cdnaseq>

Protein Sequence

<aaseq>MHSGVNGCCPLRLPAAAAVHGRRIPPLLPPRGAWPGCIAAPALHRKPGRGGGGALSSCRRASHHEKLQVAALPSKATLEFEHGVSLRSAYIVPEDVQAAGFQIDADELASIVESRDTKKLTVHAQLNGIADKLGTSLTNGIVTDKDLLNQRQDIYGVNKFAETEIRSFWEFVWEALEDTTLIILSACAIFSLVVGITTEGWPQGAHDGVGIVASILLVVSVTGTSNYQQSLQFRDLDKEKRKILVQVTRNGLRQRVLIDDLLPGDAVHLAVGDQVPADGLFISGFSVLVDESSLTGESEPVFVNEDNPYLLSGTKVLDGSCKMLVTAVGMRTQWGKLMAVLTDGGDDETPLQTRLNGVANTIGKIGLFFAVLTFIVLSQGIIGQKYLDGLLLSWSGDDVLEILDHFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRQLAACETMGSATVICSDKTGTLTTNRMTVVKACICGNTIQVNNPQTPNMSSNFPEVAVETLLESIFNNTSGEVVTNQDGKYQILGTPTETALLEFALLLDGDCKEKQLGSKIVKVEPFNSTKKRMSTILELPGGGYRAHCKGASEIVLAACDKFIDERGCIVPLDDKTSSKLNDIIKAFSSEALRTLCLAYREMEEGFSTQEQIPLQGYTCIGIVGIKDPVRPGVRQSVATCRGGDAPLTAVQLLWVNMIMDTLGALALATEPPNNNLMKKAPVGRKGKFITNVMWRNIVGQSLYQFAVMWYLQTQGKHLFGLEGYHADIVLNTIIFNTLVFCQVFNEISSREMEDINVLRGMAGNSIFLGVLTGTIFFQFILVQFLGDFANTTPLTQQQWLISILFGFLGMPIAAAIKLIAVEPHEKADTRRTP</aaseq>

Gene Sequence

<dnaseqindica>1..192#949..1003#1140..2922#3039..3342#3532..3807#ATGCACAGCGGCGTCAATGGCTGCTGCCCGCTTCGGCTCCCCGCCGCCGCCGCTGTCCACGGCCGCCGGATCCCGCCGCTGCTGCCCCCACGGGGGGCGTGGCCGGGTTGTATCGCCGCGCCGGCGCTGCACAGGAAGCCCGGCCGCGGCGGCGGCGGCGCGCTCTCCAGCTGCAGGCGAGCATCGCATCATGTCCGTCTCTTCCCCCTCACTCGCAGTTCTGTTATTAATTTAGTAGTTTCTGCTAGAACTTGCTACTGCGATCCACTGATCCTCTCCTGCTGCTCGATTTTTTTTTTTTTTTGTATTCTCGTTTTTACCTTTTTTTTTTTTTTGGGCACTGGGTTCTGAATTCTGTTAATATGCGCACGGATTGCTGCGTTAGAATCATAGTGTGTGTGTGCGCGCGCGCGCGAATAATCCATATCGCCGGGTTTCTCAATTGACATCCTTAGCTGGCTAAAAATCGCCGGGTTTCTCAATTGACATCCTTAGCTGGCTAAAAATCATGGACATAGGATAATGCAATGATAAGTACTAATTTCTGTCGTGGCAATTGGTCTGTAATAACGGCTTTTCGACAAGTATTTAGCAACTAAAATTCAACCTTGAATTTTATTTTCCTGTTAGAACTGTAAAATTAAATCACACGTGGTAGTTTGCTTGGATGTAAAATCAAGTATATTTATGATACATCGCATCCTTTTTTCTGTAACTACTGTAACGTTCTATGAGCTAGAAAATATTGCTTAACCTCCTGTCATTGATAACTCTGAACATGCTATAATTAACATTGTCTAATTTTTAATGCCATTATAAATCCTTTTCAAACCTTCATATTCTCAAACTTGCATTAGTAGTGTTAGTGCACTAAAATGCTAGGTTCTTTTGCTTGTATTCCTCTAAGTGGGTTTGAACTTTGAAATTTAAGCATCAAGTGTGTGGCAGGAGAAGTTACAGGTTGCTGCACTGCCATCCAAAGCTACACTCGAGTTTGAACATGGTAATTTTGTAATTATTCAACTGTTTCATCTTATATATTGCAGTGGAGTCCAAGTCATGCCCATATTTTCTGATTTGAATGCAGCCTTGAAAGATTCTAGTATCTAAGTATGTTGCCAAAAAATACATATACTCAGGTGTCTCACTTCGAAGTGCATATATTGTTCCTGAAGATGTTCAAGCTGCAGGGTTCCAGATTGATGCTGATGAACTAGCATCTATTGTTGAAAGTCGCGACACTAAAAAGTTGACTGTGCATGCCCAATTAAATGGGATCGCAGACAAATTAGGAACATCATTAACCAATGGTATAGTTACAGACAAGGACCTCTTGAATCAAAGGCAGGACATATATGGAGTAAATAAGTTTGCTGAGACCGAGATTCGCAGCTTTTGGGAGTTTGTATGGGAAGCACTGGAAGACACAACCCTTATAATTCTTAGTGCGTGTGCTATTTTCTCTTTGGTTGTTGGCATAACCACAGAAGGATGGCCACAAGGAGCCCATGATGGCGTTGGCATTGTTGCAAGTATCCTCCTTGTTGTTTCTGTTACCGGAACAAGTAACTATCAGCAGTCCTTGCAATTCAGGGACCTTGACAAGGAGAAAAGGAAAATTCTTGTTCAAGTCACAAGGAATGGCTTGAGACAAAGAGTACTGATAGATGACCTTCTTCCTGGTGATGCTGTCCATCTTGCTGTTGGAGATCAGGTTCCTGCAGATGGCCTATTTATTTCTGGGTTTTCTGTGTTGGTCGATGAGTCTAGTCTAACTGGGGAGAGTGAACCTGTTTTTGTAAACGAAGATAACCCTTATCTTTTATCAGGGACGAAAGTGCTTGATGGGTCCTGCAAAATGCTGGTTACAGCAGTTGGGATGAGAACACAATGGGGCAAATTAATGGCTGTTCTTACTGATGGTGGGGATGATGAAACTCCACTTCAAACCAGACTTAATGGAGTTGCGAATACTATTGGGAAAATTGGTCTATTTTTTGCTGTATTGACTTTCATTGTCCTCTCACAAGGGATAATTGGCCAGAAATACCTTGACGGGCTTCTTTTGAGTTGGTCCGGAGATGATGTGCTAGAGATATTGGATCATTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTACCTGAGGGATTGCCATTGGCAGTCACTTTGAGCCTTGCATTTGCAATGAAGAAAATGATGAATGACAAGGCACTTGTTCGACAGTTGGCTGCCTGTGAAACCATGGGCTCTGCCACAGTCATTTGCAGTGACAAGACAGGAACACTGACAACAAACCGCATGACTGTTGTAAAAGCCTGCATCTGTGGGAATACCATACAAGTTAACAATCCACAGACTCCAAACATGTCTTCCAATTTCCCAGAAGTTGCTGTAGAAACTCTTCTGGAGTCCATATTTAACAACACCAGTGGCGAAGTGGTGACTAACCAAGATGGGAAGTATCAAATACTAGGCACCCCTACTGAGACAGCTTTGTTGGAGTTTGCACTGTTGCTAGACGGAGATTGCAAAGAAAAGCAACTGGGAAGTAAGATTGTTAAAGTGGAACCTTTTAATTCAACCAAAAAGAGGATGAGTACCATTCTTGAGCTTCCTGGTGGAGGATATCGTGCACATTGTAAAGGTGCTTCAGAAATAGTATTGGCTGCATGTGATAAGTTTATTGATGAAAGAGGTTGTATTGTCCCCCTTGATGATAAAACTTCCAGTAAGCTCAATGATATAATCAAAGCCTTTTCTAGTGAAGCGCTCAGAACACTTTGCCTTGCTTATAGGGAAATGGAAGAAGGGTTTTCTACTCAAGAGCAAATACCGTTACAAGGATACACTTGCATCGGCATTGTTGGTATTAAAGATCCTGTTCGTCCAGGTGTCAGGCAGTCTGTGGCAACTTGCCGGTCAGCTGGCATTTCAGTGAGAATGATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGATCTCTATCTCATCATTTACATTTCTCTTCAGGGGAGGGGATGCTCCACTTACAGCTGTACAACTTCTTTGGGTCAACATGATCATGGATACCCTAGGGGCGCTTGCACTAGCCACCGAACCACCTAACAATAACTTGATGAAGAAAGCACCGGTAGGAAGGAAAGGGAAGTTCATCACGAATGTGATGTGGAGGAACATTGTGGGGCAGTCGTTATACCAATTCGCTGTCATGTGGTATCTACAAACTCAAGGGAAACACTTGTTTGGGCTGGAAGGCTACCATGCTGATATTGTACTAAATACAATCATATTCAACACTTTGGTCTTCTGCCAGGTATGTTAGCACTTGCAAAATACCATTCTTTTGTACTGGTAAATTTAGGAGCAAAAATTATCTCTTTAATATGGAAGAGATATATCAGACAAGAGGATCTGTGTGTGTTNGTGTGTGTGTGTAACTTTATCCTTGCATTGCCATATCTTTTTAATATGTTCCAGTTTTCATTAATTGCATGCTTTGTAGGTGTTCAATGAAATAAGCTCAAGAGAGATGGAGGACATCAACGTTCTGAGGGGCATGGCAGGGAACTCCATTTTCCTTGGTGTCCTCACCGGCACCATCTTCTTCCAGTTCATCCTAGTCCAGTTCCTGGGCGATTTCGCTAACACCACACCTCTGACCCAGCAACAGTGGCTCATCAGCATACTCTTCGGCTTCCTTGGGATGCCCATTGCTGCTGCCATCAAGTTGATTGCTGTAGAACCTCATGAAAAAGCCGATACACGTAGAACGCCGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013123