BGIOSGA014717

From RiceWiki
Revision as of 15:57, 22 July 2012 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA014717

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA014717, complete gene.

LocusTag

OSJNBB0070J16.10

Ensembl Transcript ID

BGIOSGA014717-TA

Ensembl Protein ID

BGIOSGA014717-PA

Length

3694

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24427558..24431251

Sequence Coding Region

24431176..24431251,24430991..24431031,24430704..24430773,24430468..24430616,24430208..24430303
,24429722..24429792,24429240..24429301,24428854..24428917,24428668..24428752
,24428430..24428556,24428280..24428350,24428137..24428197,24427939..24428036
,24427558..24427851

Genome Context

<gbrowseImage1> name=IndicaChromosome04:24427558..24431251 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:24427558..24431251 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGCGCGTTATTGGGGGCAAGTTTAAGCTCGGGAAGAAGATCGGGAGTGGATCCTTCGGGGAGCTCTATCTCGCCGTGAACATACAGAATAGCGAAGAGGTGGCCGTCAAACTGGAGTCTGTGAAATCAAGGCATCCTCAGCTACACTATGAATCAAAACTATATATGCTTTTGCAAGGAGGAACTGGGATTCCACATCTTAAGTGGTTTGGGGTTGAGGGGGAGTACAATGTAATGGTGATCGATCTTCTTGGCCCAAGTCTTGAGGACCTATTTAACTACTGCAACAGAAAGCTCTCTCTTAAATCAGTGCTTATGCTTGCTGATCAGATGATTGCTAGAGTAGAGTACATGCACACGAGAGGATTCCTTCATCGTGATATTAAGCCAGACAATTTCCTTATGGGTTTGGGTCGTAAAGCAAATCAGGTTTATGTCATCGATTATGGGCTTGCGAAAAAGTACCGAGATCTCCAAACACATAAGCACATACCTTATAGGGAAAACAAAAATCTAACTGGAACTGCACGATATGCTAGTGTTAATACACATCTTGGAGTTGAACAAAGCAGGAGAGATGATTTGGAATCTCTCGGTTATGTACTGATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAAGGTCTGAAAGCTGGTACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAGATGCTGACCCCAGTTGAGGTCCTCTGTAAATCTTATCCATCAGAATTTGTTTCATACTTCCATTATTGCCGATCACTACGGTTTGAAGATAAGCCAGACTATTCCTATTTGAAGAAGCTCTTCCGAGACTTATTTATCCGTGAAGGGTACCAACTTGATTATGTATTTGACTGGACCATGTTGAAGTATCCTCAAATTAGAGATAACAAACTACGACCTAGTGGGAAGACAAGTGGGTTGGTGGGTCGTTCTGCAGAACGGACTGAAAGAACTACAGGTGAAGCTCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACTAAGCACAGAACTCTACTGGACTCACTGATGTCATCTAAGGCTACCGCTGATACAGATAAAACAAGGCCGACATCACTGTCGCGGAACGGGAGCACGTCAAGACGGGCTGTTGTTTCGTCGAGCAAACCGAATTGTGGAGATCCCAGTGACACCAATCGCACAAGCCGCCTATTCTCAAGTAGCAGCAGCCGGCCATCCGCTGCCCAAAGGGCGCTTCAGTCGGCCGGAGCTGAGCTGAGGTCCTCGTCGTTGTCCAAGACGCGTAAGAGCTCACGTGATGATCCCACCATACGGAGCTTCGAGATGCTCTCACTCAGCGCTGACAGGAGGAAATAA</cdnaseq>

Protein Sequence

<aaseq>MERVIGGKFKLGKKIGSGSFGELYLAVNIQNSEEVAVKLESVKSRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKLSLKSVLMLADQMIARVEYMHTRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPVEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKKLFRDLFIREGYQLDYVFDWTMLKYPQIRDNKLRPSGKTSGLVGRSAERTERTTGEALARRTGSGSGRNGEPTKHRTLLDSLMSSKATADTDKTRPTSLSRNGSTSRRAVVSSSKPNCGDPSDTNRTSRLFSSSSSRPSAAQRALQSAGAELRSSSLSKTRKSSRDDPTIRSFEMLSLSADRRK</aaseq>

Gene Sequence

<dnaseqindica>1..76#221..261#479..548#636..784#949..1044#1460..1530#1951..2012#2335..2398#2500..2584#2696..2822#2902..2972#3055..3115#3216..3313#3401..3694#ATGGAGCGCGTTATTGGGGGCAAGTTTAAGCTCGGGAAGAAGATCGGGAGTGGATCCTTCGGGGAGCTCTATCTCGGTACGTTTGGCGATGTAGTGATGCTGTGTTTATGTTTTGGAGTAAATGATTGGGTGTTTGTCTGCGCAATTCCATGTTGCTGTTTTTGATGTCCAAAAGCTCCATTTCACATGTTCATGACGGAATTGTTTGATTTGTTTGCAGCCGTGAACATACAGAATAGCGAAGAGGTGGCCGTCAAACTGGTATGTGATGTGCAGTTCAATACTAGCATGTTGACGCGTTTTTAGCGCCTGTTTGTATCAGTCTGGATGACATGATTGGAGTTAGCTCACCTGTCTAATTTCAGACTTGCAGTGCTATATTGTGTCATGACAGTCAATTCTGCATTTGCCAGATAGCATTAGGGATGCAAGACAGCTTGCTGACCTATCTTGTGTTGTGTGTTGAACTTTTTATTAGGAGTCTGTGAAATCAAGGCATCCTCAGCTACACTATGAATCAAAACTATATATGCTTTTGCAAGGAGGAAGTAAGTATAAGTGTATAACGATAGAAGAAGTTGGTTAGTTCATTCATTCAGGCATTTTACTGATTTTATTTTTTTCCCAATGTTTAGCTGGGATTCCACATCTTAAGTGGTTTGGGGTTGAGGGGGAGTACAATGTAATGGTGATCGATCTTCTTGGCCCAAGTCTTGAGGACCTATTTAACTACTGCAACAGAAAGCTCTCTCTTAAATCAGTGCTTATGCTTGCTGATCAGATGGTGAGTCTGCCTTGTTATGCTATCATCTGTGTGTTCATTTTGATCATTATGCAATCACATGCCAAAGGACATAATATAGAGCCAAAAAGGAAATGATTTCTTCATTCTGCATGTGGTTAGTTTTTTCAATCAAATGTAACATGCCCTCCTTGCATTTTATACAGATTGCTAGAGTAGAGTACATGCACACGAGAGGATTCCTTCATCGTGATATTAAGCCAGACAATTTCCTTATGGGTTTGGGTCGTAAAGCAAATCAGGTTTGTATAATCTTGTTGTTACTATTACTATTGTTATTACTATTATCCAGCTCCAGCAGAAGGATGTACATGCTATATGGATGTGCGGGACATTCATGACATTCACCCCACGCTTGAGATTTTGTGCAAGTGCTACCTATAAAACACTCCTACTCCTAGAAGCATTCATGTTCTGAACAGTAATTGTTGTATAACCTTGTAGTTATTTCAACTGCTTTATAGGTAGTACAGTATAGTTCTTTTGAAGAGATTAATTGTTACATACTTACATTTCTGATGTATCGTTGCAATTGGTTTGCACCATTAGATGAATATGTCTGTCCATTTGTTTTGGCAGTTTAGTGCTGAATGCAATACATATTCAGTTTGCTCACAAAGATAGCATCTAATCACAGGAAAGCACTCTCCATCACAGGTTTATGTCATCGATTATGGGCTTGCGAAAAAGTACCGAGATCTCCAAACACATAAGCACATACCTTATAGGTAAAATACAATCTGTTCTTATACTAGTTAAATGCTTGTGCTTTGCTATGAATAATGTGAATTATATGCATGCACTCGTCCCTGTAGATAAACTTGATTTTAGGGATGAAATAGCTAGCGACCTGTGACAGTTTTTCTGGAGGTCAGGGTAGAAGACCCGCCTCTTGCCAGAGAGCTGTTTGACCACGAATCTTTATTAGTGAATACTAATGAGTGATGTTAACTACTGAAAATACTATTCGAAGGATCAGCGAGAATTTATGTTTGATTCATTTTGACAAAAAGAAAAACACTCCTACTGTTTTGTGAGTTGTCGTTGAGTGTTGACTTGTTTCCATTTCCACTTATGGTCATTTCTTAGTTTCTTACTCTGTGGTTCTGCATTTGAAAGCTAAATCTCTTTTCTCTGTACTGCTACAGGGAAAACAAAAATCTAACTGGAACTGCACGATATGCTAGTGTTAATACACATCTTGGAGTTGGTGAGTTTATGGCCTGCAAATACGTGTATTATATATCTATTGCTGTATCATCATCATGTGAAAAAAATAAATAATAGAAGCCAAGGGGAATAGTAAGGAAGAAAGACAAACCAGTGTTTACTGAATATGTTTAAAGTATGCCAACACTAGTAGTCTTCAAAAGCTAAAAAAGTACCACTTTACAGCCAATCAATCTATTGAACCCTATATTCAATTATTCATCCATGAATCTGAAAACCTTAACGGAAAAATTATGGTTAAAGATTGATGGATCATGGATGATACTTCCCCTGACTTGACCTCTTTCCTTTTCTTCTTCCAGAACAAAGCAGGAGAGATGATTTGGAATCTCTCGGTTATGTACTGATGTACTTCTTAAGAGGAAGGTGCGATATATAATTATACTCCACTAAATTTTCAAGTAACAGTTAAATTATTATTTTCTTGGGCACCTTTACATATTCTTTTACCATCTTGGATGTGTCAGTCTTCCTTGGCAAGGTCTGAAAGCTGGTACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAGATGCTGACCCCAGTTGAGGTACTTTGTTTCTTAGATCAAGGGACAATGCAATAAAGAAGTCCCATTACTTTTTTTTCCCCAAAATGTAGAATGAATTGTTTATCAGATTTTCTTCACTACTTCAAACAGGTCCTCTGTAAATCTTATCCATCAGAATTTGTTTCATACTTCCATTATTGCCGATCACTACGGTTTGAAGATAAGCCAGACTATTCCTATTTGAAGAAGCTCTTCCGAGACTTATTTATCCGTGAAGGTCTGCTTATTGCCGCATAATTATATAACTGCTAGTTCCTTATGTCTGTACTTTTGACATAACTTCTGCATGCTTTCAGGGTACCAACTTGATTATGTATTTGACTGGACCATGTTGAAGTATCCTCAAATTAGAGATAACAAACTACGAGTATGTATATTATTTATTTTACGCAAACCCTTTATAAGCGATGCATTTCCTAGCATGCATAACTTTTGTTTCTCACTATCAGCCTAGTGGGAAGACAAGTGGGTTGGTGGGTCGTTCTGCAGAACGGACTGAAAGAACTACAGGTTTGTAAATTTCATGTGCATTTGAGGATTGCAATAAGCTTGGGAATACATTGTGCTCCCTACGTGGTACAGGACACCCCTGATAGGTTCTCTGGTGCAGGTGAAGCTCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACTAAGCACAGAACTCTACTGGACTCACTGATGTCATCTAAGGCTGTAAGGAGTCGATGCATTATTCTGAAACTACAATCAATTCCTTCAGTGATAACAAAAGAGCTTACTATCCTGTAATGCGTTCTGCAGACCGCTGATACAGATAAAACAAGGCCGACATCACTGTCGCGGAACGGGAGCACGTCAAGACGGGCTGTTGTTTCGTCGAGCAAACCGAATTGTGGAGATCCCAGTGACACCAATCGCACAAGCCGCCTATTCTCAAGTAGCAGCAGCCGGCCATCCGCTGCCCAAAGGGCGCTTCAGTCGGCCGGAGCTGAGCTGAGGTCCTCGTCGTTGTCCAAGACGCGTAAGAGCTCACGTGATGATCCCACCATACGGAGCTTCGAGATGCTCTCACTCAGCGCTGACAGGAGGAAATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA014717