Os08g0524800

From RiceWiki
Revision as of 20:53, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0524800

Description

Similar to TA1 protein (Fragment)

Version

NM_001068824.1 GI:115477386 GeneID:4346087

Length

2506 bp

Definition

Oryza sativa Japonica Group Os08g0524800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:26190855..26193360

Sequence Coding Region

26191019..26191438,26191548..26191787,26191894..26191959,26192083..26192151,26192251..26192322
,26192411..26192629,26192727..26192820,26192915..26192952

Expression

GEO Profiles:Os08g0524800

Genome Context

<gbrowseImage1> name=NC_008401:26190855..26193360 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:26190855..26193360 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacggcggcagggtcgggggcgactacatttccagcctcctcagctcctccccccggctcgacttcggcgtgccggtgctggacgccatcgtggcgccgggaggcggcggcggcggcggcgactgcggcctcgacaagctctgcggcgacccggggttcgcggagcgcgccgcgcggctgtccagcttcaacaacggcggcggcggtgttgggcagcggtacggcggcgcgggggcggggctcttcgggatgcctcctccggctcccggcgacttcgccggaggtggctccagggaggcgtcctccgtgtccgaccccgcctcctcggcgatgaaggacgccgccgccaatgccaagaagaggaagtccacggcggcggcggccgccgccgccaagggcaaaggcaaggagcctccggttggggaagagaaggaatcagatggcaagaggtgcaagacgggcaatggcgagaaggagagctcggtgaagccgaaggcggagcaggccgggagcgacagctccgtcgaggacggcggcggtggcgggcagaagcaagggaaggggaagaatgccaagccggtggagccacccaaggactatgtccatgtccgggcgaggcgaggccaagccactgacagccacagcctcgctgagagggtcagaagagagaggatcagccagaggatgaaggttctccaggacctggttccaggatgcaacaaggtaattggcaaggcactcatgcttgatgagatcataaactacgtgcaatcgcttcaacggcaagttgagttcctgtccatgaagctagcaactgtgaatccacttgatttcagtaacctgcctactctgctgcagaaagatatgttccaagcatgcggcccttcagcgagctcggttttctcattagaaagctccaattctgcttttcggtttgccgaacaaggagatgttttccaacagtttgctcaaaacagcatggaaagccagtgcaccctgaatcagttggacctggctctatctcaggctacaaatgctgcacagtatgcttttcaagatggaacagccggcgcaaacttgcagcaaaggaacttctgggaggatgatctccaaagtgttttccatattgagaatggacagagccaggagaatggggtttcagcaccaaacttccatggtcagcagcaagcaggccacatgaaaatggagttctaa</cdnaseq>

Protein Sequence

<aaseq>MDGGRVGGDYISSLLSSSPRLDFGVPVLDAIVAPGGGGGGGDCG LDKLCGDPGFAERAARLSSFNNGGGGVGQRYGGAGAGLFGMPPPAPGDFAGGGSREAS SVSDPASSAMKDAAANAKKRKSTAAAAAAAKGKGKEPPVGEEKESDGKRCKTGNGEKE SSVKPKAEQAGSDSSVEDGGGGGQKQGKGKNAKPVEPPKDYVHVRARRGQATDSHSLA ERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNP LDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFRFAEQGDVFQQFAQNSMESQCTL NQLDLALSQATNAAQYAFQDGTAGANLQQRNFWEDDLQSVFHIENGQSQENGVSAPNF HGQQQAGHMKMEF</aaseq>

Gene Sequence

<dnaseqindica>165..584#694..933#1040..1105#1229..1297#1397..1468#1557..1775#1873..1966#2061..2098#gaaaaacagcttcttctcccctctaacccaaaaaggctgaacctccaccttcaccgcctccgcctctttgacctcctcctccgccattgccgaccaccccaagctctcccccctacaggagccaagagaaggggcaccgtgccgtttcttggacggcggcggcgatggacggcggcagggtcgggggcgactacatttccagcctcctcagctcctccccccggctcgacttcggcgtgccggtgctggacgccatcgtggcgccgggaggcggcggcggcggcggcgactgcggcctcgacaagctctgcggcgacccggggttcgcggagcgcgccgcgcggctgtccagcttcaacaacggcggcggcggtgttgggcagcggtacggcggcgcgggggcggggctcttcgggatgcctcctccggctcccggcgacttcgccggaggtggctccagggaggcgtcctccgtgtccgaccccgcctcctcggcgatgaaggacgccgccgccaatgccaagaagaggaagtccacggcggcggcggccgccgccgccaagggcaaaggcaaggagcctccggtgagcgagctccacgtctctgtgaattctgcttgtggtgtcactagctttacttacctcttgctcatgtcactgacactgaatggattcgcgaattctccgggttcaggttggggaagagaaggaatcagatggcaagaggtgcaagacgggcaatggcgagaaggagagctcggtgaagccgaaggcggagcaggccgggagcgacagctccgtcgaggacggcggcggtggcgggcagaagcaagggaaggggaagaatgccaagccggtggagccacccaaggactatgtccatgtccgggcgaggcgaggccaagccactgacagccacagcctcgctgagagggtacaattctgttcatgatgctgtcgaattcgctcgattttcgacccggttcgatcgaattcttccgcggtttgtgctgaattgtgtgtttgttacatttggttaggtcagaagagagaggatcagccagaggatgaaggttctccaggacctggttccaggatgcaacaaggtatatcgactaactagtgatttcaggatgagaatctgtagaagaaaaggagcaagtgtttgccagcaaagtttgtagaagttttgtagttttgacgcgcctaaatgttgtcttgaattgcaggtaattggcaaggcactcatgcttgatgagatcataaactacgtgcaatcgcttcaacggcaagttgaggtaatagtcataaacatgcgtgctgaaattgttacatgccatggaatgcggaactcgaaattctgaccaattttgctgtatttacttttttcgcttcagttcctgtccatgaagctagcaactgtgaatccacttgatttcagtaacctgcctactctgctgcagaaagatgtgagcttgaatcatctcctgcttgtcataccttcgtgatgcgctcaatgacttgttaattactcacattttccatgatacaattcagatgttccaagcatgcggcccttcagcgagctcggttttctcattagaaagctccaattctgcttttcggtttgccgaacaaggagatgttttccaacagtttgctcaaaacagcatggaaagccagtgcaccctgaatcagttggacctggctctatctcaggctacaaatgctgcacagtatgcttttcaagatggaacagccggcgcaaacttgcaggtgattattcgcgcctaaactacttatcatccaagtaacttaaccaagaatcattagaaatagcatcctaacaatatagctggtgtacttctctcagcaaaggaacttctgggaggatgatctccaaagtgttttccatattgagaatggacagagccaggagaatggggtttcagcaccaaacttccatggttggtaaaactaactgataattctctgctcaattttgcataccttggctaataacatttcactgacgactcgcgaatcattgaatcgccacaggtcagcagcaagcaggccacatgaaaatggagttctaacctgcttaggccacactgatcaaggaaaagaatgacaatctgtacatagggaagagacccaagtgcaaaactcccattggcaaagctagtgaagctctctgaactcttgaagctaacagtcatcattaggctcttaagagaggatatttcttaatcatagtctgcctgtagggcgatgtgattcttttggtacctactatttgagatgattatattttgatataaccgtaacaaattaaaatagttaatttgtgtataaagatatggtgcagatattacaaagcaccctcttcttcttctttctgattatgtatgagctggccaattagcagctagctggatggatggaaccatgtattaccactgttgcattttgtctatgatgatagttatcctcaccttatcact</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0524800, RefSeq:Os08g0524800