BGIOSGA016713

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Revision as of 04:33, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA016713| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA016713, complete gene.| tag = H0311C0...")
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Gene Name

BGIOSGA016713

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA016713, complete gene.

LocusTag

H0311C03.7

Ensembl Transcript ID

BGIOSGA016713-TA

Ensembl Protein ID

BGIOSGA016713-PA

Length

5575

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:23664901..23670475

Sequence Coding Region

23664901..23664969,23665073..23665137,23665234..23665294,23665962..23666096,23666185..23666316
,23666626..23666709,23666794..23666892,23667148..23667239,23667436..23667508
,23667632..23667784,23667877..23667996,23668082..23668135,23668344..23668427
,23668587..23668661,23668741..23668884,23668960..23669085,23669172..23669279
,23669354..23669416,23669496..23669570,23670065..23670258,23670349..23670475

Genome Context

<gbrowseImage1> name=IndicaChromosome04:23664901..23670475 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:23664901..23670475 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATCCCGCGCCGGCGACCCCTCGCTGGAACCTGGAGCGGCCGTACCTCACCGGCCGCTTCCATCAGGAGGCCAAGGTGGCTGCGGCGGCGCAGGGGGCCGGATCCAAGCCTTACTCCCTCGACTCCTTCAGCCGCGGCGGCGGCGGCGGCGGCGCTGAGAGTGTCATCGGATCGTACGCCGTCTCAGTGCAGGAGCTTTTGGTCATTGATGATTTGTTATCAGCTCTTGTGGGTATTGAGGGACGATACATTTCGATTAAGAGAGTACGGGGAAAGGAGGGGTATGTTGTCTTCCAGATTGATTCTTCAATGGACCTTGCACTCCAGGAATTAACTCGTCGAATTTTTCCCTTATGTGAGGATTTTGTCTTGGTATACCATTTTGTGGAGTCCAGATCACATTTCAAGAGTGGCCTGGTCAACCATGCTCTCGCTGCAGCATTGAGGGCATTCCTCTTGGATTATCAGGCAATGGTTGCTCAACTGGAGCACCAGTTCCGTCTTGGGAGACTGTCAGTTCAAGGATTGTGGTTCTTTTGTCAGAGGATGATGAGTTCATTGAACGCACTTGCTGTTCTAGTCGAGAAAGCTATCTCCAATAACACCAGTGGTTCTGCTACACTTAATCTACTTCAAAGTCAGGCAAAGGCAATGGCTGGCGATAGTGCTGTTCGATCATTACTGGAGAAGATGACAGAGTGTGCAAGTGCAGCGTATCTTAGGATGTTAGAAAGGTGGGTCTATGAGGGCGTTATAGATGATCCTTACGGTGAATTCTTCATTGCTGAAAACAAATCCTTGCAGAAGGAGAGCCTTACTCAAGATTATGATGCTAAATATTGGCAGCAAAGATACAGTCTAAAAGATGGCATCCCTAGTTTCCTTACCAATGTTGCCGCCACAATACTGACAACTGGAAAATATCTTAATGTTATGAGAGAATGTGAGTACACTGTCCAGGTTCCCTTGTCAGAGAGTTCTAAGCTGATGGGCTTTGGTTCAAACCACCAATATCTTGAATGCATCAAATCTGCGTATGACTTTGCAAGTGGTGAACTCTTGACTCTAATGAAAGATAAGTATGATCTCATTGGGAAACTGCGATCCCTCAAGCGATATCTACTTCTTGACCAAGGTGATTTTCTGGTTCACTTTATGGATATTGCCCGAGAGGAGCTTACAAAGAAACCAGAAGAAATATCTGTTGAAAAACTTCAGTCTCTTGTTGACATCGCGTTGCGAAGTACGGCAGCTGCTTCAGATCCAAGTCATGAAGACTTGACTTGCTGTGTGGAAAGAAGTTCCCTCCTTAAGAAATTGAGCACCCTGAAAGACTTGGATTGTGCATATCCTTCAGACAAGCTTGTGGCAGCTGATGTTGACCATCCCATGCCGTTAAGTGTGACTGGCTTGGAAACTTTCTGCCTGAGCTACAAGGTTCAATGGCCACTATCTCTAGTAATTTCAAGAAAAGCTTTGACAAAATACCAGTTGATTTTTCGGCTGTTGTTCCACTGCAAGCATGTTAGTCGACAATTGTGTACAGCATGGCAAATTCAACAAGGTTTCCGTTCTGTCAAAATCCTAGGAACACCAGTCCTACGGTCATCAATTCTTTGCCGCAGCATGCTCAAGTTTGTAAACAGCCTTTTACATTATCTAACCTTTGAGGTTCTTGAACCAAATTGGCATTTGATGCATGATCGGCTTCAAACTGCAAGGAGCATAGATGAGGTCATACAGATTCATGATTTCTTCCTGCAGAAGTGTCTAAAAGAATGCTTATTGTTGTTGCCTGAACTCCTCGTGAAAATCGAGAAGCTGAAAGCTCTGTGTCTCCAGTATGCGACTTCCATCCAGCTATTGATACCATCCATTGATGTTGCTAAGCCTGAAAATACATCAAAATCTAGAATGCCAAGATCAAAAATAAAAGAAACCAAAAACAGAGGCCAGCAACTGAAATTGGCATCGGAAAATGTTGTAATGTCAGAGTCAATCTTGAAATTCGAGGCAGAATTCAATTCAGAGCTTCAAAGTCTTATTCCTACGCTGAGTAACAGTTCACAGGCAGAACCATACTTGACTCATCTTGGGCAGTGCATTATTGGTGTGGGAGTTGATCAATGA</cdnaseq>

Protein Sequence

<aaseq>MDPAPATPRWNLERPYLTGRFHQEAKVAAAAQGAGSKPYSLDSFSRGGGGGGAESVIGSYAVSVQELLVIDDLLSALVGIEGRYISIKRVRGKEGYVVFQIDSSMDLALQELTRRIFPLCEDFVLVYHFVESRSHFKSGLVNHALAAALRAFLLDYQAMVAQLEHQFRLGRLSVQGLWFFCQRMMSSLNALAVLVEKAISNNTSGSATLNLLQSQAKAMAGDSAVRSLLEKMTECASAAYLRMLERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLKDGIPSFLTNVAATILTTGKYLNVMRECEYTVQVPLSESSKLMGFGSNHQYLECIKSAYDFASGELLTLMKDKYDLIGKLRSLKRYLLLDQGDFLVHFMDIAREELTKKPEEISVEKLQSLVDIALRSTAAASDPSHEDLTCCVERSSLLKKLSTLKDLDCAYPSDKLVAADVDHPMPLSVTGLETFCLSYKVQWPLSLVISRKALTKYQLIFRLLFHCKHVSRQLCTAWQIQQGFRSVKILGTPVLRSSILCRSMLKFVNSLLHYLTFEVLEPNWHLMHDRLQTARSIDEVIQIHDFFLQKCLKECLLLLPELLVKIEKLKALCLQYATSIQLLIPSIDVAKPENTSKSRMPRSKIKETKNRGQQLKLASENVVMSESILKFEAEFNSELQSLIPTLSNSSQAEPYLTHLGQCIIGVGVDQ</aaseq>

Gene Sequence

<dnaseqindica>1..69#173..237#334..394#1062..1196#1285..1416#1726..1809#1894..1992#2248..2339#2536..2608#2732..2884#2977..3096#3182..3235#3444..3527#3687..3761#3841..3984#4060..4185#4272..4379#4454..4516#4596..4670#5165..5358#5449..5575#ATGGATCCCGCGCCGGCGACCCCTCGCTGGAACCTGGAGCGGCCGTACCTCACCGGCCGCTTCCATCAGGTACGCCTCCCTTCTCTCCTCCTCCTCCTCCTCCTCCTCCCCTGTCTCGGCTGCCCCCATTGCCGCCTCCGCCTCATCCACCCTCGCGTTCTCTCTCTCGCAGGAGGCCAAGGTGGCTGCGGCGGCGCAGGGGGCCGGATCCAAGCCTTACTCCCTCGACTCCTTCAGGTGATTCGCCGGTTAAAATTTCGCGCGATTTTGTTTTTTTTTTTTTGGTGCTCGCCTCGTGGTTTTTCTGATGCCCCGGAGTCGTTGAATCTGCAGCCGCGGCGGCGGCGGCGGCGGCGCTGAGAGTGTCATCGGATCGTACGCCGTCTCAGTGCAGGTACCAGTAGCTTGTACTTTTAGGTTGTTTAGCTGGCTTAATTGGCTTCGAGCGATTACTTTTTTAATGGACCGATGCTAGGGTTTAGGTTCCGGTTCCGCGCTTCTACTTCGAGCTCAATGGTTCGGGTTAATTGGAAGAATTCGTCGTGTTTTTTTTTTTCTCTACATGTGCATGAACTGTAAATTGTTGTTAACCAGAGTCTGGATTGCAATTGGAGCTAGGAATGTTATTGAACACTGTATTTTGATTTTTTGGACTGCCTACTTCCTTGAATTCAGAAAACAATATTATGTAACGGTGCTAAGTTAGAATTTTCTTTTGATATTTTGGTTCATGTGGTCAATGTAGTGTGAGTAGATATAGTTTCAGATAATAAAATATTTTGTTACATAACTCGAATCTTCTGTTTGAATTTGAGTGATTCTCAGAGTTTGTTGGTCGGTGGTGTTCATGACATACTGACATGCCGTGCTAAGTACAACATATTTGTTGTAACAATGTTACAAAATAGCTGCATTTTCACTATGTTACTTTAAGCAGCTATTCTATGAGGCTCAATATTGTATTATCTTCATTTTGCACATCTTTAAAATTATCTAAAGTAATTTAGCTTTCACAAACAACTGAAAAGTGTAACTCCAACCTATCTGTTATTGATTTGCAGGAGCTTTTGGTCATTGATGATTTGTTATCAGCTCTTGTGGGTATTGAGGGACGATACATTTCGATTAAGAGAGTACGGGGAAAGGAGGGGTATGTTGTCTTCCAGATTGATTCTTCAATGGACCTTGCACTCCAGGTAAGGCCTGAAGAGTACAACAACTGGATCATTAATTGCCTCCAAAAAGGCAGATGCGTTTGGTACTTAACTCTTTGGGTTTTTGCAGGAATTAACTCGTCGAATTTTTCCCTTATGTGAGGATTTTGTCTTGGTATACCATTTTGTGGAGTCCAGATCACATTTCAAGAGTGGCCTGGTCAACCATGCTCTCGCTGCAGCATTGAGGGCATTCCTCTTGGTAAACTCCCTCTTTCGAGCCAGGAATATTTTAATTAATTTGCCTTGACTACAAGCTTTCTTATGTTTGGAAAAGGCGGCAAAAACGAATATACTAACAATTTCATATTATAGAGTAAAAACAGTAATGCCTGAATCATGAGTTCAAGTGTTCAGTTGTTTATTCTGACATGGAAACATTTGCATGAATTGTATTGGTAGAGAGTAATCTTATTACATTATCCTTAAATTAAAAGAAGGCCTATGTTTTCCAGTATTGGTCCTCATATGTGTATTTGGCACGAAGTTAAGTGTTTTATTTGTTTATCAGGATTATCAGGCAATGGTTGCTCAACTGGAGCACCAGTTCCGTCTTGGGAGACTGTCAGTTCAAGGATTGTGGTTCTTTTGTCAGGTGAGTTTTATTTACTGCATTAATTATTTATCCTGATTTGATTATCATTTTAAGCACAGCAAGTCCTGATGTGCTTTTTGGCAGAGGATGATGAGTTCATTGAACGCACTTGCTGTTCTAGTCGAGAAAGCTATCTCCAATAACACCAGTGGTTCTGCTACACTTAATCTACTTCAAAGTCAGGTACTTCACCTCTGAGATACATTTTTTTTCTTTTGCATCTCTCTTTCTCCAAGTACGAGAATCTTGTGGGTATGAATATCGTTTTCAGTAGGCTCCTGCAATCCAAGCTGAACAGACTGGTTTTCTTATCGGCATAACATATTTCTTTAACATAGCCGATTTCTCAACATTCAGTTTTTTGTTGCCTTTTCATTCTGGTCCACATGATTAGCTCTTTCATCCATGTATTAAATTGCTGTACTCCTTTCAACATAGGCAAAGGCAATGGCTGGCGATAGTGCTGTTCGATCATTACTGGAGAAGATGACAGAGTGTGCAAGTGCAGCGTATCTTAGGATGTTAGAAAGGTTCATCATGTTCATATCTTATTGTCTTAGCTACTTATCGGTTCTTACATTTTGTGTTGAAGTTAACAAGCATTTTGTAATTGCCAGTTCTTAATTGGATTGTAGTGTTAAGACTTAAGACTTGTTTAGATTAAAAACTTAATTAGGTTGTCTGCTGTATTTTGATAATTTCAGCTTCTAATGGGCTTCATTTTAGGTGGGTCTATGAGGGCGTTATAGATGATCCTTACGGTGAATTCTTCATTGCTGAAAACAAATCCTTGCAGAAGGTGCCGAATGACTTAGAATTTCTGGCCTACTTAAATTCCATCGTTCTCTGCATTTTCATAAGACTAGAATACTGGGTTTGTTATATTCTTAAGATAATCAGAGGCTTTCTTTGATTTTGATAGGAGAGCCTTACTCAAGATTATGATGCTAAATATTGGCAGCAAAGATACAGTCTAAAAGATGGCATCCCTAGTTTCCTTACCAATGTTGCCGCCACAATACTGACAACTGGAAAATATCTTAATGTTATGAGAGAATGTGAGTACACTGTCCAGGTATGCATGATTATTTTCTGTGGTTGCATCACTAGATGCTATTTTATATGTGTGTGTTATAAGAACACACTTGTCTTACATACTATGCTTAGGTTCCCTTGTCAGAGAGTTCTAAGCTGATGGGCTTTGGTTCAAACCACCAATATCTTGAATGCATCAAATCTGCGTATGACTTTGCAAGTGGTGAACTCTTGACTCTAATGAAAGATAAGGTTACAATTGTTCATAGCAAATGCACTATTAGATTTCATTTTCTTCTGTGGTCTGGATTCTAATTTTGTTTTATTTACCGTGTAGTATGATCTCATTGGGAAACTGCGATCCCTCAAGCGATATCTACTTCTTGACCAAGTATGGAGAAAATTGTGGGGAACATTTACTCTATTATGTATTATTACTCCACATCAGTACTCTTTAAAATCCACACTCGCTGGGTATATTCTATTAATACAATGATATTGATAGTGACAATGCATGTCATGTTGTCAACTTGAGTTTAAACACATCCATATTTATTTTCCTTGTATTAGTTCTCCAATTTGCTTTCTTTGTTTTGCAGGGTGATTTTCTGGTTCACTTTATGGATATTGCCCGAGAGGAGCTTACAAAGAAACCAGAAGAAATATCTGTTGAAAAACTTCAGGTATCCTGTTGTGCAGTATTGTCTGTCTGTTTCTTGCTATAGTCTCATGGCGGAAACTGATTTTTGACTGCTCTGGTCTAAGCTGATCCTTCTCCAGTGATATGTTATTCCTTCTTCGTTATATGTTCTTTTGAATGAATTGCCATTCTATGTTTGCAGTCTCTTGTTGACATCGCGTTGCGAAGTACGGCAGCTGCTTCAGATCCAAGTCATGAAGACTTGACTTGCTGTGTGGTAAATATATCATCTACGTCTCGTCAAACCGTATTGTGTTTTGTTAATCAATAATATTTCTTTGTCTATTTTTAAACAGGAAAGAAGTTCCCTCCTTAAGAAATTGAGCACCCTGAAAGACTTGGATTGTGCATATCCTTCAGACAAGCTTGTGGCAGCTGATGTTGACCATCCCATGCCGTTAAGTGTGACTGGCTTGGAAACTTTCTGCCTGAGCTACAAGGTTCTATCTTCTGATATTTTTTATTCGTTGTTCTACCTTCTGACAGAGAAATGATATGCCAACTATATATTTCAGGTTCAATGGCCACTATCTCTAGTAATTTCAAGAAAAGCTTTGACAAAATACCAGTTGATTTTTCGGCTGTTGTTCCACTGCAAGCATGTTAGTCGACAATTGTGTACAGCATGGCAAATTCAACAAGTATGAATGAACCTTTTCTTCACCCCCATTATATCAGCTTAATTGTTTTCTGTTTACTCGTTGACTGATGTAGAACTCTCAACCAGGGTTTCCGTTCTGTCAAAATCCTAGGAACACCAGTCCTACGGTCATCAATTCTTTGCCGCAGCATGCTCAAGTTTGTAAACAGCCTTTTACATTATCTAACCTTTGAGGTAAAGCATCCATATCACCATACTAACTGTTACCAAAGGTGAAAAATTGCTAAAGCATTCTTTTGGGTCATCAGGTTCTTGAACCAAATTGGCATTTGATGCATGATCGGCTTCAAACTGCAAGGAGCATAGATGAGGTTTTAACAACGTTCTTATGATGAAGAAAGATGTATTGCGAAAGGGGTACATTACCATTGCCGTTGATGTTGTTTGCAGGTCATACAGATTCATGATTTCTTCCTGCAGAAGTGTCTAAAAGAATGCTTATTGTTGTTGCCTGAACTCCTCGTGGTTCGTCTTCTTGCTCTTTTATATACAGAAGTGTTTGTCGCTGCTGTACGTTATATTTTCCTATTATCTGAGCTCTTTTTGGAGAGAAAAGAATTACCAGTGTTGCAACAACTTTACCTCGTCTTGTTCCTTTTAAAACTTGTTGCTTTCTTGTGAAAGCTGAAAGTAATCACTGATTGAGTTCAGAATTAGATTTCTTGCGATACTGGCATTCCAGTAATGGAAAGTTAGGAACTAGGCAGGTCAGTGATCAGGTCATCTGACTGCAAGATAACAATGGCAACTTGTCTCTTTACTGTTAAAGAAGAAAGTCACTGTCTTTACCACACTGTGTATCCTTAGCTTGATTTGTGTGAATTATATCACCCGGTGACTAGCAGTTTTACCCTTAGCCCTCTGTTTCAAAAATACATGGTAGTTTGTTTTACACTGAAATACTGTAGAAGATTCAATGTTTATTTTATTCTTATTATTAGTATATTTGTCATGTGCAGAAAATCGAGAAGCTGAAAGCTCTGTGTCTCCAGTATGCGACTTCCATCCAGCTATTGATACCATCCATTGATGTTGCTAAGCCTGAAAATACATCAAAATCTAGAATGCCAAGATCAAAAATAAAAGAAACCAAAAACAGAGGCCAGCAACTGAAATTGGCATCGGAAAATGTTGTAATGTCAGAGTCAATCTTGTATGATTCTCATATTCAGTCTTTTTCACACAATGTTAGTTTTGTATCAATTGAACATCATATGATACAATCTTGGACTGTTTGCTGCAGGAAATTCGAGGCAGAATTCAATTCAGAGCTTCAAAGTCTTATTCCTACGCTGAGTAACAGTTCACAGGCAGAACCATACTTGACTCATCTTGGGCAGTGCATTATTGGTGTGGGAGTTGATCAATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016713