BGIOSGA017295

From RiceWiki
Revision as of 04:43, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA017295| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA017295, complete gene.| tag = H0112G1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA017295

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA017295, complete gene.

LocusTag

H0112G12.7

Ensembl Transcript ID

BGIOSGA017295-TA

Ensembl Protein ID

BGIOSGA017295-PA

Length

5742

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:32815643..32821384

Sequence Coding Region

32815643..32816032,32818664..32818745,32819267..32819484,32819858..32821384

Genome Context

<gbrowseImage1> name=IndicaChromosome04:32815643..32821384 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:32815643..32821384 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCAAGGAGGAAAGATGATTACGATGGGTGCAGCAACAAAGATTGGGGGCAAAGAGGTAGCTTCAGGGAGGAGGAGGAAGGTTTTGGAACAGGCTTTCAGGGAAGTCGCATGGGGTTTGATCCGGGCTATGGTTTTGGGCAGCAGGGTAGCTTCGGTCAGAGGTGGCAGAGGCATGGTTACCGCCCGAGAGGGGCTCGTGGTTTTGGCCCAAGGCGCAGCGGTTTTGCAGGAAGACCAGGGAGAGGGTCAGCAAGAGGATTCGGGTCACAACGTCCAGCTTTTAAGAGGAAAATGGATGATATGGGAAGAAAGGGAGAGGAGAAGTGGGGAGCTGCTAGCTCGGAGAGGAATGGTGGTGCAGGCCGGGTGAAAGTGGGGGAGGTGGAGAGGATTACACGAGACAGTGCCGATCTAGCCCAGGAGAAACAAGGGAAAACCACACCTGATTACTTTTTCTCGCGGCTCGCGGGGCTCTACCTGGCAATCGCCATGGCGTTGAACGCGTTCGCCCAGCCCGTCACCAACTACCTCATCAAACGTTACAACATGAAGCCGAATGCCGCAACAAACGTGGCCAACGTCTTCAGTGGCACCTACAGCTTCTCGCCGGTGGTCGGAGCCTTCGTCGCCGATGCGTTCTGCGGCAGGTTCTGGACCCTCTTGTTCGGAGCCGTCGCCGCCTTTGTTGCAATGGTGGTCATCACGCTATCGGCGACGATCCGTCAGCTCAAGCCACCGTCGTGCAGCGACGTGGCACGGCAAGCCGGCACGTGCGCGGGGCCGTCGGGCCTCCACCGCGCCGTGCTCTACATCGGCATGGCGCTGCTCGTCGTGGCCACGGGCGGCGCGAACCCGACCAGCCTGCCGTTCGGCGCGGACCAGTTCGACCACGACGACGCGAGCAGCGGCAGCAGCAGCAACGAAGCCGACGAGCGACGACGGCGCGCCGAGGAGCCCGCGGGGCTCAAGCGCTTCTACAACTGGTACTACGTGGTCACCATGATGGCCTCGTTCATGGCGCTCACCTTCATCGCGTACATCCAGGACAAGGTGAGCTGGGGCCTCGGCTTCGGCATCCCCACGGCGCTCGTGGCCGCCACCTTCGCCGTGTTCCTCGCCGGCACGCCGCTGTACGTCCGCGTGCCGGCCGAGGGCAGCATCTTCTCGAGCGTCGCGCGGGTGGTCGTCGCGTCGTGCCGGAAGCGGAGGCTCACGCTGCCTCACCCGCGCGACGCGCGGCAGCAGGAGGCCGTTCTGTACAATCCTCCCGTCGTCGTCGCAGCTGGAACGGGAACCAGCCGCGTCTTCAAGCTCCCACTCACGTTGCAGCTGAGCTTTCTGAACAAGGCGGCCATTGTAACCGCCGACGCCGACGAGATACGGCCGGACGGATCTCCGGCGAGGCCGTGGAGCCTGTGCAGCGTGCAGCAGGTGGAGGAGGTGAAGTGCCTCGTCAAGATCGTCCCCGTGTGGATCTCCGGCGTGATGTGGTTCATCTCGGTGGCGGAGCTGACCAACTACACGTTCCTGCAGGCCCTGACCATGGACCTCCACATGGGCAGGAGCTTCACCATCCCGCCCGTGTCGATCGCCGCCATATTCAACCTCGCCATCGTGCTCTTCGTGCCGGTCTACGATCTGCTCGTCGCCCGCGCAGCGCAGCGCGTCACCGGGGTGGAGGGCGGCATCACGGTGCTGCAGAGGCAGGGCGTCGGCGTGGCGATCAGCGGCCTGGCGCTCGTGGTCGCGGCCGTCGTCGAGCGCAGGCGCCGGGCCTCCGCCTTGGACAACGGCGGGACGTCGCCGATGTCGGTGTTCGTGCTCGCGCCGCAGCTCGCCGTGATGGGCGTCTCGGCGGCGTTCAACATGATCGGGCAGATGGAGTTCTACAACACGGAGTTCCCGGACCAGATGCGCACGCTCGCCAACGCGGCGTTCTACTGCGCGCAGGGGGCGAGCAGCTACCTGGCCACGGCGGTTGTGAACGTCGTGAACGCGAGGACGAGGCGGCGCGGCGGCGGGCAGGGCTGGGTCGCCGAGGACATCAACGCCGGGAAGCTGGACCACTTCTACTACGCCATGGCCGTGTTCGCGGCGATCAACTTCGTCTACTTCCTCGTCTGCTCCTACTTCTACCGCTACAAGGGCGAGCCAGAGGTGGCGGCCGAGGACTCGCCACCGGCCACTCCAGAGGCCGTCCTCCTGAAGCACTAG</cdnaseq>

Protein Sequence

<aaseq>MARRKDDYDGCSNKDWGQRGSFREEEEGFGTGFQGSRMGFDPGYGFGQQGSFGQRWQRHGYRPRGARGFGPRRSGFAGRPGRGSARGFGSQRPAFKRKMDDMGRKGEEKWGAASSERNGGAGRVKVGEVERITRDSADLAQEKQGKTTPDYFFSRLAGLYLAIAMALNAFAQPVTNYLIKRYNMKPNAATNVANVFSGTYSFSPVVGAFVADAFCGRFWTLLFGAVAAFVAMVVITLSATIRQLKPPSCSDVARQAGTCAGPSGLHRAVLYIGMALLVVATGGANPTSLPFGADQFDHDDASSGSSSNEADERRRRAEEPAGLKRFYNWYYVVTMMASFMALTFIAYIQDKVSWGLGFGIPTALVAATFAVFLAGTPLYVRVPAEGSIFSSVARVVVASCRKRRLTLPHPRDARQQEAVLYNPPVVVAAGTGTSRVFKLPLTLQLSFLNKAAIVTADADEIRPDGSPARPWSLCSVQQVEEVKCLVKIVPVWISGVMWFISVAELTNYTFLQALTMDLHMGRSFTIPPVSIAAIFNLAIVLFVPVYDLLVARAAQRVTGVEGGITVLQRQGVGVAISGLALVVAAVVERRRRASALDNGGTSPMSVFVLAPQLAVMGVSAAFNMIGQMEFYNTEFPDQMRTLANAAFYCAQGASSYLATAVVNVVNARTRRRGGGQGWVAEDINAGKLDHFYYAMAVFAAINFVYFLVCSYFYRYKGEPEVAAEDSPPATPEAVLLKH</aaseq>

Gene Sequence

<dnaseqindica>1..390#3022..3103#3625..3842#4216..5742#ATGGCAAGGAGGAAAGATGATTACGATGGGTGCAGCAACAAAGATTGGGGGCAAAGAGGTAGCTTCAGGGAGGAGGAGGAAGGTTTTGGAACAGGCTTTCAGGGAAGTCGCATGGGGTTTGATCCGGGCTATGGTTTTGGGCAGCAGGGTAGCTTCGGTCAGAGGTGGCAGAGGCATGGTTACCGCCCGAGAGGGGCTCGTGGTTTTGGCCCAAGGCGCAGCGGTTTTGCAGGAAGACCAGGGAGAGGGTCAGCAAGAGGATTCGGGTCACAACGTCCAGCTTTTAAGAGGAAAATGGATGATATGGGAAGAAAGGGAGAGGAGAAGTGGGGAGCTGCTAGCTCGGAGAGGAATGGTGGTGCAGGCCGGGTGAAAGTGGGGGAGGTGGAGGTCCCCCACTTTAAAGAAGAGAGTGATTCTCACTAAGGACAATCTAGCAAAAAGAAATTGGAAGGGCAACACTAAGTGTTGTTTTTTAACCACAATGAAACGATACAACATCTCTTCTTTGATTGTCATATTGCTAGATTTGTTTGGAGTACCCTTTTTATAACATTTGGGATAAATCCGCCTAACAATGTTGCTAATATGTTTGGGATTTGGCTAAAGGGTTTGCAATCTAGGCTAAGCACCAAATTTTTATAGGGATTGCGGCGTTGTTGTGGGTAATGTGGATTTGTAGAAATGATGTGGTCTTCAATGGCTCCAATTTTAACTCTTACTTGCAGGTTATTTTCAGGGGGACGTATTGGGCTCGACAATGGTTCTTGCTGCTTAAAGAAGATTAGCGCGATGTGATGAAAGAAGGATGCAAACTGTTAGAGACATCTGTCATGCACTTCTTTGGTAAAGATGGATGGAACATGAGAAAGCGGTTAAAGGACTAATGTGGTCGTTAGTTTGTTTGGAAGGTCTTTTCACTTTGAAAGGCGTTGGAAGTCTTTGTGCTCTTTTAGTTTTATGTAAGGTGCTTGAGCCTTTGTGATCCTTTTGTTTGTGAACATGTGTGTATGAACTGAGCTTGTTTGGTCAGATTTTCTGTGGCTGTATACACCCCCATTGGTGTAGAAGCCGGGTTTTATAAATTCCCATTATCTAAAAAAAATTAGCGACCCCAACGGATTCGGGCAAGCGCTAGCAGATCAAGCCTCTAGTCTAAGGGTGCTTCATTTATAGTACTAGTTGATAGCACATTTCCTATACACGATAAACGAAGCAGCGCATTGTTAAGTATTAAGCTAAAAGAGTTTAAAAATGATTTTATATTAACTTTTATATAGATTTTTTTTTTCTGAAAAATATATCGTTCAGTAGTTTGAGAGGACGTGTACATGAAAAAGGAGAAAGTAAAGGCTAGAAAGTTGAGAAAAGAACACACCCGCATAGTATTTCTGGCCTATTTTCCACGCGGATAAGCGCCATGCGAGCGTAGGCCGAAATCGCTAAAATACGACCAGTCGCGCGCCTCCCCTCCCGCACGGCGCAGCCACGTGGCACACGCGGAGAGGGGGGCCGCAGTGGAATGGCACGGGAGCAAAACGTGCGCGCATTTCTCGTTTTTTATTTTCAGTTTTTCTTTTTGTTTTTTCCTGGTTTTTCCCCTTATTTCTTTCAATTTTTAACATATACATATATATAAATTTCGTATTCATGCGTATACAAAGTTTGTATACATACAAATAAAAAAATTGTATACGTGGTGTTTTTTTCTTGGTTTTCGGTTTTTTAAATATGTATGTATTTACATATATAAACTTTGTATACGTGTATACAACAAACTTTGTATACACGTGGTGTTTTTTTTGTTTTCAGTTTTTTAAATATGCATACTTTACATACGTACCACCTATTACTACTACTAGGACTGCCTACTACCTCTACTACTACTTTTATACTAGTAGTAGTACTACTACACAGTTACTACTACTATACTGTTACTAGTAGTAATACTACACTGTTGTACATAAAATTTAATGTATGTACGTGTATGTAAAATTGGGAAAATAGTGTAGTAGTACTAGTAATTATAGTAGTAGTAGGTGGTACTAGTACTGTACTATAGGAGGAGACCGCGCGGGCGGCTGGGCGCGCCCATTAGCAGTGGCTGCGCGGCTCTCTGCACTCACTGTTCTTCCTGCAGTCCTGCTTCGGGGGATCACTGATTTCACATGACATGGTTCACATCTTCTTCTTTTTTTTTGAAACTTAAGCAATTTTATTAAATAAAGACAGATAAGGAGGATATGGTTCACATCTCACATTAACAAAATGCGCCGCTTGCTGTCACATTCCAGTAGTTCCCAGGACCAAGCAGCTTTTCGGCTTTCGCTAGATGATGATCGTGAATTCGTGACTCCTGAACGCGCGGCCGGCGAAACCGTCGTGCGCAAGGCGTGTTTCTTCGGAGTTCGGATCACACGTTCACACGCGAAGAAGAGAGAAGACAAAAGCATTGACGTTTGTTGCTCCGTTCACAAATACGTCTTCCCTGATGTATCATCCCATTTGAATATAGCCCGGCTCGTTAGGGACGTGATATTTGGGGGTTTAAAATTGATCCCGCTGGACTTTACAGTGCATACGCACTCACAAGTCACAAGTACGTTTATACATATCCATTCCGAACACGTTCCAGAAGACGAATGGTAATATGGGATTCGTGTTAATAATTACCAATACTCGTTCTATGTATCTGAGTGAACGTACGTTAGTTCCTCGAAGGAGATGGGGCTGCTTCTAGTTCCTATACTTAATTACATGACATGTCCTAACAGAATTCTTCAGGTTGAAGGCTAACTTAAACCTTCATATTATACTGCTAACAGCCTTCTTCCGGGAAAAAAGGTACACATCCACATGCCGCAAAAGGAAAGATAGTTTATTCAGCTGTTTTCCGATCAATAAAAGGAAAAAAAAAATCATTCATGCACAACTGCATGCAACAGTACCAACCAAGTGAAATTTGACGACATTTGACTCTTTCACAAAGTCACCCGGCTCATTTTTCTGTCAACTTAACAGAGGATTACACGAGACAGTGCCGATCTAGCCCAGGAGAAACAAGGGAAAACCACACCTGATTACTTTTTCTCGCGGCTCGCGGGTACAAATACTGGGATCAGCGCCCGCTGTATCTGTCCATCTCTCAATTCAAATCACCCACGTCAACAGAAGTAATCAGCCACATTGGCAACTGGAAATGTGTGAGGGCGGAAGGGCAGCAGCATCCATGGCTCGCACGGCGAGCGCGTCCCGGCGACAGCCGGAGACGACCAGCCTCGCCGTGGATGAGGCCGGAGGCAGGGCGTCGCGGAGGCCGAGAGGATGGAAAGCCGTCGGGTTCATGATCGGTCTCTCTCTCCTTCCTGTCTGCTCATGAATTCGTACTCCCTCGATCTCGAAAAATCCCATCTAGTATTGAACGAGATATTTTCTACTACAATAAATCTGAATATAAAAAATGTTTCATTTAATACTAAATTGTTTTTTTACAGAGGTAGTACTACAGTTCATGATAAGTTCAAAATTTGAGCCACTGTTTTGTTTTTTAAAAAAGCAAGAACAATTTAAGAGTGCTGCTTTGTGAGCTAATGACCAAATGCTTTTTGGTGTGCGTGGAAGCAGGGCTCTACCTGGCAATCGCCATGGCGTTGAACGCGTTCGCCCAGCCCGTCACCAACTACCTCATCAAACGTTACAACATGAAGCCGAATGCCGCAACAAACGTGGCCAACGTCTTCAGTGGCACCTACAGCTTCTCGCCGGTGGTCGGAGCCTTCGTCGCCGATGCGTTCTGCGGCAGGTTCTGGACCCTCTTGTTCGGAGCCGTCGCCGCCTTTGTTGTAAGTGATCAGCATTGCATCCATGACCCATCAGAAAACTATTTAAAAATTCTCGAAAGATATATCTTGTTATTTATACATGTCATTCAAATAATTATGATTTTTTTTAAATAAACAAGATAAATTTATTTAGAAACATATAAAATTTAATTTAATTTAAATATAAGATGCAATGAATATAGGTTAATTTGTCATAATCAATTTTATTGATTTTTTTAAAAATATTTTCATAACTATTCGGATAATATGCGAATAATTAACGAGGGAATGTTCTGGAGAGTTTGGAGTCCACTCTCATCATCCATCTCTCGCTTATCAGGTTAAGAGACGAAATTAATGGCTGCTTATCCGTGATCTCCTCTCGCCCATGCAGGCAATGGTGGTCATCACGCTATCGGCGACGATCCGTCAGCTCAAGCCACCGTCGTGCAGCGACGTGGCACGGCAAGCCGGCACGTGCGCGGGGCCGTCGGGCCTCCACCGCGCCGTGCTCTACATCGGCATGGCGCTGCTCGTCGTGGCCACGGGCGGCGCGAACCCGACCAGCCTGCCGTTCGGCGCGGACCAGTTCGACCACGACGACGCGAGCAGCGGCAGCAGCAGCAACGAAGCCGACGAGCGACGACGGCGCGCCGAGGAGCCCGCGGGGCTCAAGCGCTTCTACAACTGGTACTACGTGGTCACCATGATGGCCTCGTTCATGGCGCTCACCTTCATCGCGTACATCCAGGACAAGGTGAGCTGGGGCCTCGGCTTCGGCATCCCCACGGCGCTCGTGGCCGCCACCTTCGCCGTGTTCCTCGCCGGCACGCCGCTGTACGTCCGCGTGCCGGCCGAGGGCAGCATCTTCTCGAGCGTCGCGCGGGTGGTCGTCGCGTCGTGCCGGAAGCGGAGGCTCACGCTGCCTCACCCGCGCGACGCGCGGCAGCAGGAGGCCGTTCTGTACAATCCTCCCGTCGTCGTCGCAGCTGGAACGGGAACCAGCCGCGTCTTCAAGCTCCCACTCACGTTGCAGCTGAGCTTTCTGAACAAGGCGGCCATTGTAACCGCCGACGCCGACGAGATACGGCCGGACGGATCTCCGGCGAGGCCGTGGAGCCTGTGCAGCGTGCAGCAGGTGGAGGAGGTGAAGTGCCTCGTCAAGATCGTCCCCGTGTGGATCTCCGGCGTGATGTGGTTCATCTCGGTGGCGGAGCTGACCAACTACACGTTCCTGCAGGCCCTGACCATGGACCTCCACATGGGCAGGAGCTTCACCATCCCGCCCGTGTCGATCGCCGCCATATTCAACCTCGCCATCGTGCTCTTCGTGCCGGTCTACGATCTGCTCGTCGCCCGCGCAGCGCAGCGCGTCACCGGGGTGGAGGGCGGCATCACGGTGCTGCAGAGGCAGGGCGTCGGCGTGGCGATCAGCGGCCTGGCGCTCGTGGTCGCGGCCGTCGTCGAGCGCAGGCGCCGGGCCTCCGCCTTGGACAACGGCGGGACGTCGCCGATGTCGGTGTTCGTGCTCGCGCCGCAGCTCGCCGTGATGGGCGTCTCGGCGGCGTTCAACATGATCGGGCAGATGGAGTTCTACAACACGGAGTTCCCGGACCAGATGCGCACGCTCGCCAACGCGGCGTTCTACTGCGCGCAGGGGGCGAGCAGCTACCTGGCCACGGCGGTTGTGAACGTCGTGAACGCGAGGACGAGGCGGCGCGGCGGCGGGCAGGGCTGGGTCGCCGAGGACATCAACGCCGGGAAGCTGGACCACTTCTACTACGCCATGGCCGTGTTCGCGGCGATCAACTTCGTCTACTTCCTCGTCTGCTCCTACTTCTACCGCTACAAGGGCGAGCCAGAGGTGGCGGCCGAGGACTCGCCACCGGCCACTCCAGAGGCCGTCCTCCTGAAGCACTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA017295