BGIOSGA020416

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Revision as of 03:08, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020416| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020416, complete gene.| tag = OJ1268_...")
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Gene Name

BGIOSGA020416

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020416, complete gene.

LocusTag

OJ1268_B08.15

Ensembl Transcript ID

BGIOSGA020416-TA

Ensembl Protein ID

BGIOSGA020416-PA

Length

6964

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:30012220..30019183

Sequence Coding Region

30012220..30013536,30013617..30013649,30014162..30014275,30014372..30014521,30014609..30014707
,30016187..30016252,30017637..30017873,30017966..30018241,30018623..30018811
,30019022..30019183

Genome Context

<gbrowseImage1> name=IndicaChromosome05:30012220..30019183 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:30012220..30019183 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGGTTCCCTGCTTCTGTTGCCAACCTGGGGACCAACGGGAGGCCCGCGGCGAGCTCATCGCATTTGGCTTCGAGGATCAGGTTTGCTGGTCTGGGCAGTATCCGGCGGTGGCAGTATGCGCCTGGGAGGCTGTGTAGATGCATGGTTGTGACCAATTTGATCGATGAAGAGAAGGGGGTTCAGTTCTCGTCGAGAGGGAGTGTGAGTGTGAAGCCTAGTGATGATAGCGATCTTCTTTTGAAGCCACCGCAGAAGCCAGTCCGGGCGAATGGGCCACCGGAGAGCGTAAATGCGGCATCACCATCTCCGTCGAGGCCGACGTTGGAGGATAGGGATAAGGTTAGGGAGTCATTGGATGAGGTGTTGGAGAAGGCTGAGAAGCTCAAGGCATCAACCTCTGGAAATGGAATTGGAAATGGTGACTTGAGGCAGAATGGCGCGTCGAAGCCTGATAGTTCGGCAACGCCAGCAGCGGAGGGTGCGAATTCGAGGAAGACAAAAACACTTAAGAGCGTATGGCGAAAGGGAAACCCTGTGTCAACTGTACATAAGGTGGTCAGAGATCATCCACGCTCTGAAAGTAGGAATCAGTCTAGTTCTACAGCAAAACCTTCTATGCCAGCTCCAACAAAACCAGTACCTCCTCTACTAACAAAACCTTCAGTAGCACCACCACCTCGTCGGCCTGTCAAGGCTGATACATCAAAGGAGAAAAAGGGACCCATCCTGATTGATAAATTTGCTTCCAATAAACCAATAGTGGATCCAGTTGTAGCTGCAGCACTGATAGAACCTGTAAAGCCAGTACGAGGCCCACCAGCAAAAGTCAAGGATGATCGTCGTAAAAAAACAAGCACACCAGCTGGTCCTCGCCGACGAATGCCAAAAAATGATGGTTTAGTTGATGAGGATACTGCAGTGCGCAAGGGGAGGAGATGGAGCAAGGCAAAACGCAGAGCTGCAAGACTTCAGCTTGAGGCTTCACAAGTTGAAGAGCCAGTTAGAGTCGAGATCCTTGAAGTTGGTGAAGAAGGAATGGTAATTGAGGAATTGGCATATCAATTGGCAATTGACGAATCAGAAATTTTGCGATTTTTATCTGTGAGAGGAGCTATGCTTGACAATGTTCAGACACTTGATAAAGATCTGGTTAAGATGGTTTGTATGGAATATGATGTAGAAGTACTGGAAAGTGGTCCAGTGAAAGTGGAAGAGATGGCAAAGAAGAAGGAATTTCTTGACGAGGAAGATTTGGACAAGTTGGAAGACAGACCCCCTATTGTAACTATCATGGGCCATGTCGATCATGGAAAGACTACCCTGTTGGATTATATACGCAAGAGCAAGGTGGTGGCATCTGAGGCTGGCGGAATAACACAAGGGATTGGTGCCTATCAGGTTATTGTACAGGTTGATGGAAACCCTCATGCTTGTGTTTTTCTTGATACTCCAGGGCACGAGGCATTTGGTGCAATGAGAGCTCGGGGTGCTAGGGTAACTGATATCTGTATCATTGTTGTCTCTGCGGATGATGGTGTTCGTCCACAAACAAATGAGGCAATTGCACATGCAAAGGCAGCTGGAGTCCCTATTGTGATAGCCATAAACAAGATAGACAAGGAAGGAGCTAATGCTGAACGGGTCATGCAAGAGCTTTCCCAAATTGGACTTATGCCAGAGGCGTGGGGTGGTGATATCCCAATGATTCAGATCCGTGCAATGTATGATGATGGTGGAAAGCTTATCGATAAGGCTGGGCCATCCAATGCCGTGCAGGTTATTGGCTTGAATAATGTACCCCTTGCTGGTGATGAATTTGAGTCTGTGGACAACCTTGATGTTGCACGTGAAAGGGCAAACGCACGTGCTGAAGCACTGAGAATTGAAAGGATATCTTCGAAAGCTGGGGAAGGGAAAGTCACTCTGTCATCCATTGCTGCATCTGTTTCATCTGGAAAACAAGTAGGAATTGATACACACGAGCTTAATATCATCCTTAAAGTTGATTTTCAGGGTTCAGTTGAGGCCATTAGGCAAGCAATCCAAGTGCTGCCTCAAGAAAATGTCTCCTTGAGGTTCCTACTTCAAGCTCCGGGAGATGTGAGTGTCAGTGATGTTGATCTGGCTGTTGCTTCAGAAGGGATTATATTTGGTTTTAATGTCAAAGCTCCAGGATCAGTTAAAAGCTATGCTAAGAAGAAAAGTGTGGAAATTCGTCTGTACAAGGTGATCTATGATTTGATTGATGATTTGCGGAATGCCATGGAAGGACTTCTTGAACTTGCTGAGGAGGAAGTACCAATTGGTTCAGCCAAAGTTCGTGCTGTTTTTAGTAGTGGCAGTGGCAAGGTGGCGGGTTGCATGATTACTACTGGGAAAGTTGTTCATGACTGCAATGTTCGGGTTCTTCGTAAAGGGAAAGAAGTTTATATGGGTACACTTGATTCGTTAAGACGGGTGAAAGAAACTGTAAAGGAGGTTGGTGCTGGGCTAGAGTGTGGCATTGGGGTAGATGATTTTGACGAATGGGAGGAAGGTGATGTCGTGGAGGCATTCAACACAGTTAAGAAGACAAGAACCCTAGAGGAAGCCTCTGCTTCTGTGACTGCTGCTCTAAAGGATGCCGGCGTCCAGCTGTAG</cdnaseq>

Protein Sequence

<aaseq>MGFPASVANLGTNGRPAASSSHLASRIRFAGLGSIRRWQYAPGRLCRCMVVTNLIDEEKGVQFSSRGSVSVKPSDDSDLLLKPPQKPVRANGPPESVNAASPSPSRPTLEDRDKVRESLDEVLEKAEKLKASTSGNGIGNGDLRQNGASKPDSSATPAAEGANSRKTKTLKSVWRKGNPVSTVHKVVRDHPRSESRNQSSSTAKPSMPAPTKPVPPLLTKPSVAPPPRRPVKADTSKEKKGPILIDKFASNKPIVDPVVAAALIEPVKPVRGPPAKVKDDRRKKTSTPAGPRRRMPKNDGLVDEDTAVRKGRRWSKAKRRAARLQLEASQVEEPVRVEILEVGEEGMVIEELAYQLAIDESEILRFLSVRGAMLDNVQTLDKDLVKMVCMEYDVEVLESGPVKVEEMAKKKEFLDEEDLDKLEDRPPIVTIMGHVDHGKTTLLDYIRKSKVVASEAGGITQGIGAYQVIVQVDGNPHACVFLDTPGHEAFGAMRARGARVTDICIIVVSADDGVRPQTNEAIAHAKAAGVPIVIAINKIDKEGANAERVMQELSQIGLMPEAWGGDIPMIQIRAMYDDGGKLIDKAGPSNAVQVIGLNNVPLAGDEFESVDNLDVARERANARAEALRIERISSKAGEGKVTLSSIAASVSSGKQVGIDTHELNIILKVDFQGSVEAIRQAIQVLPQENVSLRFLLQAPGDVSVSDVDLAVASEGIIFGFNVKAPGSVKSYAKKKSVEIRLYKVIYDLIDDLRNAMEGLLELAEEEVPIGSAKVRAVFSSGSGKVAGCMITTGKVVHDCNVRVLRKGKEVYMGTLDSLRRVKETVKEVGAGLECGIGVDDFDEWEEGDVVEAFNTVKKTRTLEEASASVTAALKDAGVQL</aaseq>

Gene Sequence

<dnaseqindica>1..1317#1398..1430#1943..2056#2153..2302#2390..2488#3968..4033#5418..5654#5747..6022#6404..6592#6803..6964#ATGGGGTTCCCTGCTTCTGTTGCCAACCTGGGGACCAACGGGAGGCCCGCGGCGAGCTCATCGCATTTGGCTTCGAGGATCAGGTTTGCTGGTCTGGGCAGTATCCGGCGGTGGCAGTATGCGCCTGGGAGGCTGTGTAGATGCATGGTTGTGACCAATTTGATCGATGAAGAGAAGGGGGTTCAGTTCTCGTCGAGAGGGAGTGTGAGTGTGAAGCCTAGTGATGATAGCGATCTTCTTTTGAAGCCACCGCAGAAGCCAGTCCGGGCGAATGGGCCACCGGAGAGCGTAAATGCGGCATCACCATCTCCGTCGAGGCCGACGTTGGAGGATAGGGATAAGGTTAGGGAGTCATTGGATGAGGTGTTGGAGAAGGCTGAGAAGCTCAAGGCATCAACCTCTGGAAATGGAATTGGAAATGGTGACTTGAGGCAGAATGGCGCGTCGAAGCCTGATAGTTCGGCAACGCCAGCAGCGGAGGGTGCGAATTCGAGGAAGACAAAAACACTTAAGAGCGTATGGCGAAAGGGAAACCCTGTGTCAACTGTACATAAGGTGGTCAGAGATCATCCACGCTCTGAAAGTAGGAATCAGTCTAGTTCTACAGCAAAACCTTCTATGCCAGCTCCAACAAAACCAGTACCTCCTCTACTAACAAAACCTTCAGTAGCACCACCACCTCGTCGGCCTGTCAAGGCTGATACATCAAAGGAGAAAAAGGGACCCATCCTGATTGATAAATTTGCTTCCAATAAACCAATAGTGGATCCAGTTGTAGCTGCAGCACTGATAGAACCTGTAAAGCCAGTACGAGGCCCACCAGCAAAAGTCAAGGATGATCGTCGTAAAAAAACAAGCACACCAGCTGGTCCTCGCCGACGAATGCCAAAAAATGATGGTTTAGTTGATGAGGATACTGCAGTGCGCAAGGGGAGGAGATGGAGCAAGGCAAAACGCAGAGCTGCAAGACTTCAGCTTGAGGCTTCACAAGTTGAAGAGCCAGTTAGAGTCGAGATCCTTGAAGTTGGTGAAGAAGGAATGGTAATTGAGGAATTGGCATATCAATTGGCAATTGACGAATCAGAAATTTTGCGATTTTTATCTGTGAGAGGAGCTATGCTTGACAATGTTCAGACACTTGATAAAGATCTGGTTAAGATGGTTTGTATGGAATATGATGTAGAAGTACTGGAAAGTGGTCCAGTGAAAGTGGAAGAGATGGCAAAGAAGAAGGAATTTCTTGACGAGGAAGATTTGGACAAGTTGGAAGACAGACCCCCTATTGTAACTATCATGGGCCATGTCGATCATGGAAAGGTACTAAGCCAGTATCAATTTTTCAGTTTGTTAACTGTTCTGAAGCACTGTTTGTATGACACTGTTATTTCTGTTTGCAGACTACCCTGTTGGATTATATACGCAAGAGCAAGGTAGACACTCCTTGGCATGTTCCTCCTGTTGGTGATTTTGGGATTTTAGATGATACTCCCTTCATTCTTTTTTAGATGACATTTTAGTATGATGGTTTTGTTCTCAAATAGAAACATCTTGGATTTTCTGGGTAAAATTAAAGCTAGTGGAATGTGCATTTGTTTTTTTACCATGATGCACATTCTAGGATGAGTTGATAGTACATAGTTTCTCTTCAAAGTGTTCAATCACATTCACAGTTCCATGTGGCACCCTGCCTCTTGATTCGAAGAACTTTCACCGTCCCTTGCCTGACCAGTGTTGGTATTGGAACGAATGAAGGCTTTAGATTAATGAGTAGATGACGGGCTAATTAGTCCATTTCCTGGCATTGAACAGTTGCATTGTTCTCTGCAATATTGGCTAAAACATCATATTTTGGTGAACAAAGGGAGTGGAATAATTACTAATGTTAAAACATGGAAACACCTATTTCCTATAAACCTGTAGATCTAAATAAAGTTAGTTACAGGTGGTGGCATCTGAGGCTGGCGGAATAACACAAGGGATTGGTGCCTATCAGGTTATTGTACAGGTTGATGGAAACCCTCATGCTTGTGTTTTTCTTGATACTCCAGGGCACGAGGTATAGCAAAAGTATATGTATATTTTACCATATGTTCTCTCTTTCTGGTTGTATTAATGTGGGGCATTACAACTCCTAATTCTTCAACAACAATAGGCATTTGGTGCAATGAGAGCTCGGGGTGCTAGGGTAACTGATATCTGTATCATTGTTGTCTCTGCGGATGATGGTGTTCGTCCACAAACAAATGAGGCAATTGCACATGCAAAGGCAGCTGGAGTCCCTATTGTGATAGCCATAAACAAGGTCTATTTCCTAGTCATTTCATCATCGATTACAGTTGTTAAAAGGAAAATTCTCTTGTCATGTTTCAGTAACCTCCTAATTAAGCAGATAGACAAGGAAGGAGCTAATGCTGAACGGGTCATGCAAGAGCTTTCCCAAATTGGACTTATGCCAGAGGCGTGGGGTGGTGATATCCCAATGATTCAGGTTGTTGATTCTCACATCTGGACGAGAAATTTCCTTGCTATATACTACATCACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGAGTCCCCGCGCGTGAAGACGAACACGGGATAGACCGAGAGCGAAATCCAGTATCCTGCAAGAAATATGGGCCTAAACAATCAAAGTTGCTAGGAATTGGGCCGAACGTACTTGCGGATCAAGAGCTGGGCAATGATAGAGAAGTGATTTTGCCCTGGCCTACTACGATCGATAAAAGCTTTACATAAAGTCTAGTTTGACTCTGTACGACCATCGTTCGCCTCAATCGTAAAAAAAATTGGGTATAACGACTCTCTCAACGGTTAAACCCGGTAAAAAGACTCACGGAACAGTACTAAGGTTGGTATTTACTCATGTGGTACATTAACCTAGTCTTCATACTATATGGTGTTTACACGAAAGAACAATCACTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATAGGACCACTTGTAAATGGGATAATAGTTTTAGACATTTCTGATGGATGAGAGTTTCACTTGTATGAACCGAGTTTACGTGCATGGATTGTGAGGTGTGATTATCTTATGAGCTCTCCATTAATTATAAGGCACTGAGATACTGTTCTATTTATGACAGCCTTAAAGGTCAGATTATGCAGAAATACAACTAAGGCCTTACAGTTGACACCTTTTCTGCCAATATGTGATAATAAATCTTCATGCTAAGATTCTTTTAAATTTTACTGAACTTGCAGAGTTGCAATGCATCTCAACATTGGGGAGTTGAGATACCCTGTATCTTTGATAACTGCACTCTGCAGATTGTCCTGTTCATTCATGCTTTTTGGATGCCACGATGGATATGTTACAGTCCATGCTTGACTTGGTTCCTGCTTCCCTGAACAGCCTAGCCTCACAAGGCAGAGCAGACTTCATTTACATTTTCGAGTTTTATATTATTGAGGTTTTACCTGGCATTTTGTCTATTCTGAAGGTACCATCGTCTTAAAATGTTGTAATATAAAATGAGATTTAATCCATACTAGAACAACTAACCTGGATAGAAATTATGTACAGATTCGACAACGAATCTGGATAAAAGTTTATCCATATTCGTTGTCTAAATTTTATTCTAGGTACCAACATTTTGTAGTGGAGAAAATATATTTAGCTGTGGGCCGTACGAAGGATGCAGGAAATATTTGGCACTACAGGAAATATTTGGCTCTGTTTCAGAGTAGCTGTTGAACACTGGATTTTTTCATTTTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATGAAAAAAAGAAGCACAAACTAACAAACATGGGTCATTTGGAGTATAACATAGCATTGTTATCATTTCAGATCCGTGCAATGTATGATGATGGTGGAAAGCTTATCGATAAGGCTGGGCCATCCAATGCCGTGCAGGTTTTCCCTTTCCTTTATTTTCCCCGTTCCTTTTACCATGATCCTTCCTAACATTTCCTAATATACCATATTTCGGATGAAAAAGTTACTGAAATTACAGTTGGTTCTCCTCATGAGATGGCCCCTCTGGCCATGACGACTCTAAACAAAATACTCATCACAAGTCTGATGCAATTTTGACATAAAGAGAAAGCATCTGAAACTATAAATGTTTATGTGCATTAGAACTGTTAGTTACATGACATTGATGAATATGGATAAATAGAGGTCGCTGTTGACTAGCTAGCAAATATAAACCTGCTCAAGTCCTAAATGGCATCCTTATATGTGAGCTCTTTTACATGATGTAAAAATGCACCCTTTTATCAGAAGCTGAAAATTCTAAAATTTGAATTTTGTAGACAGGAGAAGACAAGAAAAAACACAAGTGGGTTTTCTTTAATCACCCTGGTATTCCTGAGCTTGATTGTTGCTATCAACTTCTCTTGCTTTCTTCCAGGGACTATATTTATGATGAGTAATTACACCTCAGCCCATTATTGGAGACCTTTGTGGCCCATGTTATGCAGTATGGTGGGATTAGTCTCCAATGGAGAATTTAGTTTGTGGTCAGCATATAAGCTCACATGTTCTAACCACAAAACCTCCAGGTTTACACATTTAATTTGGCAAGAATGTGTAAGTACAGTGCTATCTGCCATGTGGGACCACACTTGTAGAAGGGCCAAGGTGTGTTGACCGGAGGAAATGCACGGGGCACATGGCCAGAAGGCACATGAGGCTTACAGATAAGCTATTTAGTAAAATTTAGTAAAATAGGTTTAGAGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATACCTGTCAATCACAACTACTGTCTCTATTCTTCTAGCTATGCACCGAGTGAAGCACGTGACATATATGTGCATGGACCTGTCCCTACAGAAGGGTTAGGCTAATGTAGATTCTGGAAGCTGGAGTGTGAGTGCCTATGAGCCTATGGAGGCATACAGCATTGCACCAAGAGTGATTCTGGTCATTTGCCATGTAGGACATTGTGCTGCCGGGAGCATCACAAGTTCATGTGTTCCTCTAGATTAATTCTTTTTTCATGAAGCAAGGATGAGAGTATAAGTACTGTGCAATACATACATGGGCCTGCTTATAGAAGGATTAAGCTAATGCCAATTTTGGAAGCTGGATGCTACACATATACTATCACAATTCATGGATTGAAAAGGAAACATTTCTTCCATAGCTTGCTGCCTTTTACTTTAGTACCATTGAGCATTAAATGTTCTTCAAAAGTTTGTAGTATTATTGTAAGCATCCTGAATTTATCAAGAAATGATATGTTATTGACAGGTTATTGGCTTGAATAATGTACCCCTTGCTGGTGATGAATTTGAGTCTGTGGACAACCTTGATGTTGCACGTGAAAGGGCAAACGCACGTGCTGAAGCACTGAGAATTGAAAGGATATCTTCGAAAGCTGGGGAAGGGAAAGTCACTCTGTCATCCATTGCTGCATCTGTTTCATCTGGAAAACAAGTAGGAATTGATACACACGAGCTTAATATCATCCTTAAAGTTGATTTTCAGGTATCCACTGCTCTTGCAAACTATATGCATTATCGAATATGAACTATTCATTTTTTCTATTTGCTAAATATGCCAAGCATATGATCAAATAGGGTTCAGTTGAGGCCATTAGGCAAGCAATCCAAGTGCTGCCTCAAGAAAATGTCTCCTTGAGGTTCCTACTTCAAGCTCCGGGAGATGTGAGTGTCAGTGATGTTGATCTGGCTGTTGCTTCAGAAGGGATTATATTTGGTTTTAATGTCAAAGCTCCAGGATCAGTTAAAAGCTATGCTAAGAAGAAAAGTGTGGAAATTCGTCTGTACAAGGTGATCTATGATTTGATTGATGATTTGCGGAATGCCATGGAAGGACTTCTTGAACTTGCTGAGGTAAGCAGAAAATTGCTTTTCAACTTTTATGAACCAGTTGAGTCTTGGGACATGCCCTTGTTGATAGGTCCACATGGACCACATTCCTTTGCATGCTGGGAAATCCTTCTTCTAAAATACTTCCTCCGTTTCACAATATAAGACTTCCTTGCGTTGCCCACATTCATATAGATGTTAATGAATCCAGGCATATATATGTGTCTAGACTTATTAACTTCTAAATGAATATGAGTAATGCTAGAAAGTCTTACAATCTGAAACAGAGGGAGTATTATTTATTTCTCCATTTCCATGATAGTTTGGTGTGCTTTAGAGTATTTACTTGTCATTTCAAGTTGCTGGAATATTTGGATGTCCATCCTCATTGTCTTTCTTTATCAGGAGGAAGTACCAATTGGTTCAGCCAAAGTTCGTGCTGTTTTTAGTAGTGGCAGTGGCAAGGTGGCGGGTTGCATGATTACTACTGGGAAAGTTGTTCATGACTGCAATGTTCGGGTTCTTCGTAAAGGGAAAGAAGTTTATATGGGTACACTTGATTCGTTAAGACGGGTGAAAGAAACTGTAAAGGAGGTACGTACGATAAACATGAATCCATCAACTATTTTTATTTCACTGCACTCTTTGAGAAAGTTATTTACCCGCAATATCACAATGTGTTTCCTGAGTATCACTGCAAAAAGAAAAAGTTTTCACATTATTAATTTGTTATATTCACATTCACTTTATTTTGATATTAGTCCCCGTAATGTGATGTTCAACATTTACATTTTTCCCCACTAGGTTGGTGCTGGGCTAGAGTGTGGCATTGGGGTAGATGATTTTGACGAATGGGAGGAAGGTGATGTCGTGGAGGCATTCAACACAGTTAAGAAGACAAGAACCCTAGAGGAAGCCTCTGCTTCTGTGACTGCTGCTCTAAAGGATGCCGGCGTCCAGCTGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020416