BGIOSGA020438

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Revision as of 03:09, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020438| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020438, complete gene.| tag = OSJNBA0...")
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Gene Name

BGIOSGA020438

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020438, complete gene.

LocusTag

OSJNBA0017N18.24

Ensembl Transcript ID

BGIOSGA020438-TA

Ensembl Protein ID

BGIOSGA020438-PA

Length

7513

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:30310072..30317584

Sequence Coding Region

30310072..30310111,30311298..30311341,30312407..30312476,30312578..30312701,30313305..30313945
,30314980..30315250,30315320..30315599,30315929..30316096,30316753..30317244
,30317318..30317584

Genome Context

<gbrowseImage1> name=IndicaChromosome05:30310072..30317584 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:30310072..30317584 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAGATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTCGAGGATCTAAGACTGGAGGAGATTCAACTGTCAGTGGTAAAGGCCCTACCAAGAAAGAAACGGAGTTACATTCTCTTCCTAAATCATCAGTCTCTGATTCTGTGAAGGAAAGCAATCCAACTGAGAAGATTTCAGCAGCCGACCATGCTACTATCAATGACAATCTTATTTTATCAAGTGGCCAAGCTCATGCAAAGTCCACTCCTCTCCAGCCCCCTTCTCAAGTGAAGCATGGTTGGGGTGGGATGCCAGGGCGCCCTTCCATGGCTGATATTGTCAAGATGGGCAAACCCCAAGCTAAACCTGTGAGATCTGTTGCATGTAATACCGGGATACCAACCATTGGTGGTTCAGTCATTTCCAATGCAACAAATCATACTTCAAAAGATTCACAAGACTTAGTTTTGCCTTCACAAGTGAACTCTGTTGCAACTGATAGAATACCAAATGGTACCAATGAGGTCTCCCCTGCATCTAATGACTCCTCTATTGATGTATTACCTCCCAGAGAGGGGTTGGAGGTGCCAGAATCTGTCGCCACAGTTAAACCTGGATCGTCAACTGCAGATGTTTACAAAGATGAAGTTGAAGAAGACATGGATTCTGATAAAAATAAGGAGATGAGTGCAAGCAATGCAGACAGTCAAACATCTTCAGGACCATATCCTGCATCTAGTAAAGAAGTACACTCAGAACATACTCAAATTGCCACCCATCACAATGACTTGATAGTGGAAACAGAGGACTCTCAGTCTGATGGCAATGCATTTGAGAATAATCGTGTTGCAGATTCAGAGGGAAATATGTCTGCTACTGACAAACAGTTTGAACAGTTGATTCTACATGAGGAAAAAAAATCAAAATCATCTGAAGATAACCCAGCTGTAATAATTCCTGATCATCTTCAGGTTTCAAATGCTGATTGTGCACACTTGACATTTGGTAGTTTTGTGTCTGGAACACTTGATGCGCCAGTCTCCTTGAAAACTGCCAATGGTGATGAGGAGGTTGCAGCAGTTTCTGATAACCATTCGATTGATCAGTCAGATGTCAGAATCCATGAGTACGAAAATAAGGATACAGTAGCACCTGCAGCTGACGAACATGTTGCCTCTTCAACAAAAAGTGACACGGAGAATGTTGATGTTGCACCTGTACAACAGCCTGAATTGAGAACAGCCGATTTAATAGATGTTCCAAACAACACCATGTACAATAATTTATCAACCTCCGATTATGCAACTCCAAGTGCAGTGCAACCAGATTCTTCCGCACACATTTATCTGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATGCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTGACTTTGATCCTGCTTTCTCATTATTACTTACTAACCCACCATTGGCTACGATGGTTCATGGCACAACATCATCGTCCATGGGCAATGCAACTACTGTTTCTACACAACCACAAGAGATTGTGAATCCAGGTGCTTCATCCAACCCTCAATTGAATCAATCTCAGCCAAGCACCAGCACCAGCATTGCTTCTGGTCCTCCACTCCCTCAGCATCTCACGCTTCACCCTTATGCTCAAGCAACTCTTCCTCTTGGGTATGCAAGCATGATTGGCTACCCATCTCTAGCCCCAAGTTATACATATCTCCCGCCTCCTGCCTTTCAGCAACCATACATGAACAGTGGCCTATTCCACCAAGCAGCAGCTGCAGTTCCCAATTCCAGTGTAAAATATCCTTTGCCACAGTACAAAGGCAATGTTTCCCTTGCGAGCTTACCCCAGCAAGCCTCACTGCTCTCAAGCTATGTTGGGGGCTTTGGAGCTGCAAGCAGCATGCCAGGAAATTTTGCCCTGAACCAAAGCACACCATCAGCAACCGCTGCTCCTGGGTTTGATGGAACAGTGCCCGCGCAATACAAAGAAGGGAATCAATTTGTATCTCTTCAGCAGAGCGAGAACGCTGCGATGTGGATGCATGGTGCCAGTTCGCGAACAATGCCACCTCTTGCAGCAAATGCCTTGTATGGCTATCAAGGGCAGCAGGGTCACCAGGGCGGCCTTCGGCAGGGGCAGCTGCCTTCACAGTTTGGTGCTCCACTTGCACCGACACAGCCCGGCCTGGGCCATGAGCACCGGAACCCTAGTGACGGCAACTTAAGCTCTGCTGCCGCTGCCGCTGCCGCTCAGGCTAACCAAATGTGGCCAAATAGTTACTGA</cdnaseq>

Protein Sequence

<aaseq>MDPDVAVERLISQDPFHEVRRKRDKKKEIKAPQETRPRPFYKPAFRGSKTGGDSTVSGKGPTKKETELHSLPKSSVSDSVKESNPTEKISAADHATINDNLILSSGQAHAKSTPLQPPSQVKHGWGGMPGRPSMADIVKMGKPQAKPVRSVACNTGIPTIGGSVISNATNHTSKDSQDLVLPSQVNSVATDRIPNGTNEVSPASNDSSIDVLPPREGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNKEMSASNADSQTSSGPYPASSKEVHSEHTQIATHHNDLIVETEDSQSDGNAFENNRVADSEGNMSATDKQFEQLILHEEKKSKSSEDNPAVIIPDHLQVSNADCAHLTFGSFVSGTLDAPVSLKTANGDEEVAAVSDNHSIDQSDVRIHEYENKDTVAPAADEHVASSTKSDTENVDVAPVQQPELRTADLIDVPNNTMYNNLSTSDYATPSAVQPDSSAHIYLQEHRQLQNISPLSSFMQGNIPNGLLPPALPPLRDFDPAFSLLLTNPPLATMVHGTTSSSMGNATTVSTQPQEIVNPGASSNPQLNQSQPSTSTSIASGPPLPQHLTLHPYAQATLPLGYASMIGYPSLAPSYTYLPPPAFQQPYMNSGLFHQAAAAVPNSSVKYPLPQYKGNVSLASLPQQASLLSSYVGGFGAASSMPGNFALNQSTPSATAAPGFDGTVPAQYKEGNQFVSLQQSENAAMWMHGASSRTMPPLAANALYGYQGQQGHQGGLRQGQLPSQFGAPLAPTQPGLGHEHRNPSDGNLSSAAAAAAAQANQMWPNSY</aaseq>

Gene Sequence

<dnaseqindica>1..40#1227..1270#2336..2405#2507..2630#3234..3874#4909..5179#5249..5528#5858..6025#6682..7173#7247..7513#ATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAGGTATTATAGCCCCCGGTTTCTGGCGCCCGTCGTCGCCTAGGCTCCTCCCGGACGATTTTGAATTGTACAGGTTTATTTTGTTTTGCGGCGCGGTGTGCTTGTGAGAGGTTGGAGTACTAGGGTTTGATTTCGCGTGACGATTGCCTCGGACCTGGAGGAGTTGCGCTTTGAGCTAATCTGTTCCTTTATTGTTTTTAGTATTTTTGTCATGTTTCTCTTGTAACTCCAAACTTGGACCTTTGCTATTGAATTGCCTGTCAATCTGGTGTTCTTTTTTTAACGCTGTACTTATCTGTATTCACTTGCTGTGAGTTTGATTACATGGAGCTGCCTATGTGGGAAGCTAGTAATTCATATTGTTTTTACAATCAATGAAGCTTATATATTTTCCTGTGCAGAAGAATTTTTTTTCTTGGTTTGAGATGGAATTGGCTACCTATGATGTAGTAAGCAGATTCAGTTTAATATCTTAGTACGATGGGCTTGGTTTGTGTGCTTATTCAGGAACATGATGGTTTATCTATATATTAATATCTGCTGATTGTTTTCCATGTTTGAGTTGTGTGGTTGGTGTGTATAGATTGTGTGTTGGATGGAATTGCAACATGTTATTCAACTTAAGCTATACAATGATTTGGTTTTGGAAGCTTTCTTCATGCATTTTATTTACCTTTCTGTAGAGATCTATTTGCATTCATTATTATTTAGTGTTACTTTCTATCTGTTTAATGCTTGGTCTAGGTACATTGCTTTTTAGGAAGCTGGTAACTTTGAATTGTATCTGGAATTGCATCCAGTGGCATTTATCTATTTGTGTTGGGATATTTTTTTTTCTGTTGGAACTAGTGCATTAAAAGACAATTGTTTACCTCTGTTAGAAGCTAGTGTAACGAGAATAATTCCTTTCTTTGTTGGGAAGAAAGTGCTAGACTGCAAGCATAAAAGTGATACCTTAGGTGTTGGTCGCTTTTGTTGGCTGAAGGAGCTAATCAAAACTTGTCCTTTCCTTTTATTCCTGAGTGTCTTATTTGTCCTATACTCATGCAGTCATGCTCTATACAATGCTTACCTGTGCTATGTCATCTAGCTGATCTATTTCTAATAAATGCAGCATAGTATGGAACTATAGATCAAAAACATAATTCCATGTTGGTAGTTCCTCTAACTTATTTTCATGTCTGTTCAGATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGGTAAGCATATGAACTCTGAATTCTATATGCTGCCAGTTCTTAAGGAAATTCACTGTTTGGTTTTCCTCCCTGTTTATTTTGTGTGAGTTTTCCATCTCAATGCGAATATAGTGTCATTGATCACATACGAGTTAGAACTATGCTACATGCTAATTTACCGTTGTTGTTTGCCGCAATACCTGATAAGTAGTACTGAATTTATTTCTCATTCTCATGATTTGTTTACAACTGTATGCCATTTTTAGGGACTAGGTCGTTTTGTATCAAATGCTTTGTTCTCGCGATACTGTATAAGTGTATTTGATGGCAGTTAAGTTCTCTTCAAGGGAAATTTTTATGTCATTAAATTGGACATGCTTTTCACATGCGCCGCCAACATTTTTATACTAAGACATATGTAACTACTCCATCAGTACACTTCTCACATACGCCATCATGTGACTGTGTCCAAGCCAACCGTTAGCACATGAAAAAAGTTGATTTGACCCCTAGATGCTGTGTTGGTGGGACATCACATAAAGGGGGCAATCTGAGGTCTGAGAATTCTGTTATGAGTTCCAGATTTTGAAATCGTAATGTTGAAATTCTGATTTTGTGTAATCAAAATAATAATTTGAGATATTACGCTAAATTTCATTTATTTGAACTCCAAATTCAGACATTCAAAGTTGAAGTTAGCTTGATGTTTGATAATGTAGTTGAACTGAAATTGAAATTTGTTGGAAGTATGCAATTGGAGTTTTTGAGCATCATAGAATTCAAATTTTAGTCCTTTTAAGTTTTAAGCATTCTCTAGCCTTAGAGATGGCCCCCTTTAATCCCTGTCCCATCAACACATCACCCAGAGTCAAAGCCACCTTTTTTTTTTCACTTGCCTAATAGTTGGCCTGGATGGCATATGCCCCACAATGGTGTATATGAGAAGTGCATCAAGGTAGTAGTGTTATGTGTGAGTCTTTGAGAGCTTGCAAAAATTACTGAATATTATTGATCTCTGAAGTTTGTCCAAGTGACATTTCTATGCCATTTTTTGTTCTCCTAACAAACTCTTATTATTACATGTAGATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTCGAGGATCTAAGACTGGAGGTAGTGTGCAACATTATGCATTATGACATGATAATGAAATTTGTTTTTTTTTTTTAAATATATATAATGGGGGCACATTCTGTTACCTTTTAACATTTTAGGAGATTCAACTGTCAGTGGTAAAGGCCCTACCAAGAAAGAAACGGAGTTACATTCTCTTCCTAAATCATCAGTCTCTGATTCTGTGAAGGAAAGCAATCCAACTGAGAAGATTTCAGCAGCCGAGTAAGTGAGAGTTCTTGATTTTTGCATAGTGTTTTAGCCATATATTTCTTGTTTTCAGTTAATGTGCCTGGTTTCTATTTTTGTATATGTTATCCTTCGGTATTGTTGATTGATGCTCGACATTTTGTTCACTCTTCCTTTTGCTAATGGAAGCACTACAGAAATTACAGTGCATGTTTTGTCTGATGTAACATTATATTTTAATTAGATCTTTGTTAGCTGTCTTCCCAGTAGTATGATGCATGACCATCCAACAGTCTACAATTCTATTTTTGTTTATCTATGTGTAATAGTTTGGATGATTTATTCAGCTCCCGTAGGTAAACATGAGACTTACCAACTGCAGTGTCTTAATGGTGTCTGTTTTGTAATACTTTCTAGAAGGTGGATTTATCGGAATATCTAGTTTGTACATAATGGAGTCAGGATTTCTCCATATATGTTAATGAGTTTATGACCTAAAATTATACAACTACTAATGTCTTGGCAGAGTAGTTTGTTGTCTGGGAGACATCATGTGTAGTGTTCCAGAAATTTTCTTCTCTCTTTATCATGCACTTTTCATTTTTGTAGACCTCCTAACCTTTTATACTCATTTTTCAGCCATGCTACTATCAATGACAATCTTATTTTATCAAGTGGCCAAGCTCATGCAAAGTCCACTCCTCTCCAGCCCCCTTCTCAAGTGAAGCATGGTTGGGGTGGGATGCCAGGGCGCCCTTCCATGGCTGATATTGTCAAGATGGGCAAACCCCAAGCTAAACCTGTGAGATCTGTTGCATGTAATACCGGGATACCAACCATTGGTGGTTCAGTCATTTCCAATGCAACAAATCATACTTCAAAAGATTCACAAGACTTAGTTTTGCCTTCACAAGTGAACTCTGTTGCAACTGATAGAATACCAAATGGTACCAATGAGGTCTCCCCTGCATCTAATGACTCCTCTATTGATGTATTACCTCCCAGAGAGGGGTTGGAGGTGCCAGAATCTGTCGCCACAGTTAAACCTGGATCGTCAACTGCAGATGTTTACAAAGATGAAGTTGAAGAAGACATGGATTCTGATAAAAATAAGGAGATGAGTGCAAGCAATGCAGACAGTCAAACATCTTCAGGACCATATCCTGCATCTAGTAAAGAAGTACACTCAGAACATACTCAAATTGCCACCCATCACAATGACTTGATAGTGGAAACAGAGGACTCTCAGTCTGATGGCAATGCATTTGAGAATAATCGTGGTAGGTCATCTAAAATTGCCCCCACCTTTTTTATGACTTCATATGTATGCCTACACCAAATGCGAATATATATTCTAGAAATCTAGAACATAGATTTTGTGTTTCGGCATGGTATAGTTTTGTCTATAGTAACCAGAATACCCATCAAGCCATTGTTATTACATTGAATCGGAAGCAATCTGATTTTATTTTTGCTGGCGGCTTGATCTCTGCCTATTTGTCATTTGGCTTATGTGTTGGTGTTACTGTCTGACATGGATCTTAAGCAAGTTCCCATATCCAGCACTAAGCCCGTTTCTTTCTACTAGCTACTGCAAGTCTAAATCCGATACAATACTGTCTTAAATTTTTGCGTTTGCTTATATAACTATTAGTACTACTTAGGACTGGAACCACTGTCTCCATCAACATCTTGACTTTAGCATGAGACTATAAATCAAATCCTCATGATGAGTAATGAGTTCAATACAAATTATTTATTTTGAATCAAATACTCCCTCCGTCCCAGAATATAACAAGTTTTAGGGTTGGACACGATTATTAAGAAAGTAGGTAGAAGTGAGTGGTGGAGGGTTGTAATTGGATGAGTAGTGGAGGTAGGTGAGAAAAGTGAATGGTGGAGGGTTGTGATTGGTTGGGAAGAGAATGTTGGTAGAGAAGTTGTTATATTTTGGGACAAATCCTAAGGGCTAAAAGTTGTTATATTTTGGGACGGAGGGAGTACCTTTTAAGGTTGTTGCTCATTTACCCGAGAATGGACCAGTAGAAAGTTTGATATATTTTTATTTGTTCGTATGGCTCCAGCTATTCACTATTATTACCTTTTTATCCAATCTCTACTGAAACTACAACTTTTCACATTTTACGTTCTTACCAGGACCTTTTTATTATATCTTAGTGCAGCACCACGGCCTGTGAAGGTTCTGCATGTGCCTTTTTATATTACATTTTTACACTATATATTTTCTAATTGGCTTTTCTGTTGGAAGTTACGAGCCTCCTTTCTAATTGTTTATGATAATCTATTTCCTTAGTTGCAGATTCAGAGGGAAATATGTCTGCTACTGACAAACAGTTTGAACAGTTGATTCTACATGAGGAAAAAAAATCAAAATCATCTGAAGATAACCCAGCTGTAATAATTCCTGATCATCTTCAGGTTTCAAATGCTGATTGTGCACACTTGACATTTGGTAGTTTTGTGTCTGGAACACTTGATGCGCCAGTCTCCTTGAAAACTGCCAATGGTGATGAGGAGGTTGCAGCAGTTTCTGATAACCATTCGATTGATCAGTCAGATGTCAGGTATGTATTTGTCTGTCGCATTCTTCACTTCTTTTCAAACATCATGTAACATCTATTTCCATTTTTCAGAATCCATGAGTACGAAAATAAGGATACAGTAGCACCTGCAGCTGACGAACATGTTGCCTCTTCAACAAAAAGTGACACGGAGAATGTTGATGTTGCACCTGTACAACAGCCTGAATTGAGAACAGCCGATTTAATAGATGTTCCAAACAACACCATGTACAATAATTTATCAACCTCCGATTATGCAACTCCAAGTGCAGTGCAACCAGATTCTTCCGCACACATTTATCTGCAAGAACATCGACAATTGCAAAACATTTCCCCTCTCTCTAGCTTTATGGTATTGGCTTCTTTTTGTTTTATTAAATAATTTTACATTGATACCTTATTAGTAGTTTCCATATGGAATTATCTACATAAAAAATTCGGAATTGTGGTTTTTATTTTGTATAAGCCCCATTTAATTTAGTTTCTGCAAGCATATCTGTCAGTGCATCCCCCAGTGCATGTTCTCTAAAATAATGGAATTAACTCCATCTAGATAGAGATACATTACTTCACTGATGATGAAATCTGTGGGCGCATTTCTGTTTCACTGTTGATGATATATTATAACCATTAACACCTATCTTTTCTTCACTGAGAAGCTTATTTTACTTATCTTTGCAGCAAGGAAATATCCCGAATGGACTATTGCCACCAGCACTTCCACCTTTGCGTGACTTTGATCCTGCTTTCTCATTATTACTTACTAACCCACCATTGGCTACGATGGTTCATGGCACAACATCATCGTCCATGGGCAATGCAACTACTGTTTCTACACAACCACAAGAGGTGTGGAACAGCTCATTGAATAATTGGACTTTTTATCTACTTCATACTTCCATGCTATCTTTTGGGTCATAGAATCAATTCATAAACTAGCTTTACTCTTTGAATAGACATAGTAGCATACATATTTGTTCTGATAAACGGCATTTATGGTTATTGATGAACTTAAACCTGTGGTTTGATGAGTTTAATCAAGTACACGGGTATTTCTCCTCGTTGCATGGTTTTGCTGATGATTTCGCTTGATGGCTTCATGATGCAACTAACCTGTATAGCTTCATGCTATACAACTGTTTCTTTTGTTAACTTTGTCGTGAAGGCACTATTAATAAGCCAGAGACCAGGCAGTAACTAATCGAAATTTGGTTAAGTTTGGTCACATCATTTGGCGAAGTTCCATTTGCATAGCATTTGTTTTGTTATGTTTTTTTTTAAGCCTGCTTTGCTGTCAAAACTGTACATACTTACTACAAAAGTCACGCTTCAACCTTTGGCTCATCATTTTCTCGCAATAGTAAACGCATACCTCATCAAGCTGTACTTTTTTATCCTCATTTTATTGAGGTTTATCTTGTGATTTGTGAATATATTTTCTGCCTTATTTTTCTTTTGGATTGTTTACCTGTGTATCATTGTTCTTGTGGTGTCGGCTCTTGCAGATTGTGAATCCAGGTGCTTCATCCAACCCTCAATTGAATCAATCTCAGCCAAGCACCAGCACCAGCATTGCTTCTGGTCCTCCACTCCCTCAGCATCTCACGCTTCACCCTTATGCTCAAGCAACTCTTCCTCTTGGGTATGCAAGCATGATTGGCTACCCATCTCTAGCCCCAAGTTATACATATCTCCCGCCTCCTGCCTTTCAGCAACCATACATGAACAGTGGCCTATTCCACCAAGCAGCAGCTGCAGTTCCCAATTCCAGTGTAAAATATCCTTTGCCACAGTACAAAGGCAATGTTTCCCTTGCGAGCTTACCCCAGCAAGCCTCACTGCTCTCAAGCTATGTTGGGGGCTTTGGAGCTGCAAGCAGCATGCCAGGAAATTTTGCCCTGAACCAAAGCACACCATCAGCAACCGCTGCTCCTGGGTTTGATGGAACAGTGCCCGCGCAATACAAAGAAGGGAATCAATTTGTATCTCTTCAGCAGGTAACTACCATGGCACTTAAATTTGTACAAGCATGAATTCAATAGCAATCTAACTTCCGTAAATTTCTTGCAGAGCGAGAACGCTGCGATGTGGATGCATGGTGCCAGTTCGCGAACAATGCCACCTCTTGCAGCAAATGCCTTGTATGGCTATCAAGGGCAGCAGGGTCACCAGGGCGGCCTTCGGCAGGGGCAGCTGCCTTCACAGTTTGGTGCTCCACTTGCACCGACACAGCCCGGCCTGGGCCATGAGCACCGGAACCCTAGTGACGGCAACTTAAGCTCTGCTGCCGCTGCCGCTGCCGCTCAGGCTAACCAAATGTGGCCAAATAGTTACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020438