BGIOSGA020482

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Revision as of 03:10, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020482| Description = BGIOSGA020482| Definition = Oryza sativa Indica Group BGIOSGA020482, complete gene.| tag = | tid = BGIOSGA020482-TA|...")
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Gene Name

BGIOSGA020482

Description

BGIOSGA020482

Definition

Oryza sativa Indica Group BGIOSGA020482, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA020482-TA

Ensembl Protein ID

BGIOSGA020482-PA

Length

6098

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:30862211..30868308

Sequence Coding Region

30862211..30862249,30863289..30863392,30863758..30863844,30863934..30864009,30864125..30864199
,30864363..30864416,30864896..30864955,30865040..30865156,30865330..30865424
,30865543..30865745,30866108..30866162,30866395..30866508,30867007..30867148
,30867313..30867339,30867574..30867644,30867720..30868308

Genome Context

<gbrowseImage1> name=IndicaChromosome05:30862211..30868308 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:30862211..30868308 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACGAGGATGAAATAATTCAGGAGTGCAAAGCGCTGAATACTCGTCTCATAAATTTCTTGCGAGACAAGGCTCAAGTGGAGCAATTGCTTCGTTACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTTGAGGACCTTAGTAGAGGATGAAGAGCTAATGGATTTGCTTTTCTCATTTGTAAGACCTGGTCATCCACATAGCACATTGTTAGCTGGATACTTCAGTAAGGTGGTAATATGTTTGATGCTGAGAAAGACTTCCCCTCTAATGAACTATGTCCAGGAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAGGTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATTATGCTGACACATTGCAGTGGTTAGAAAATACAGATGTACTGGAAATGATTGTGGATAAATTTAGCTCATCTGATTCCCCTGAAGTACACGCCAATGCTGCAGAAATTCTTTCTGCAGTGACTCGATGCGCCCCTCCTGCTCTCGCTGCAAAAATATGCAGCCCAAGTTTTGTTGGGAGATTATTTCGTCATGCTCTTCAAGAATCACGCCCCAAATCTGTCCTGGTTCATTCATTATCAGTATGTATATCTTTGTTGGATCCAAAAAGACTAGCGTCAGCCTCATACCAAGCATTTAGAAGTAACTTGAGCCATGGGACATTGGTTACTGCTAGTCCAGAGACAGTTGATGGTATGCTGGAGAGCCTAGGCGTAATGCCTGTCTGTTGCTGGAATACCCCTGGGATCTTTAAGCTGTTTGCGAAGCTGTNGCAAATGGTGCCAAATGGAATGCATGTTGCTGGTTGCTTGTTGACATGTTTTGCCTTGCACAGGTGCCTGTTGCCTGGTTGCCATTGTTGGGTTTTGAATGGGCGCGGTCGTCCGACTTCTCTACATGATCGTGGTAGGGATAGCGATGATGATGACTTCCGAGACAGGGACTATGATGTGGCGGCACTTGCTAATAACCTGAGCCAGGCATTCCGGTATGGAATGTACAGCAATGATGACATTGAAGAGGCACAAGTAATTGAACGAGATGATGAGGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGTTTGGGTGATGATCAGGACAGCAGCTCCCTCTTTACGAATTCAAACTGGTTTACCTTTGATGGTGATAGAGGAATAAATGACCGTTTAGCTGCCTCTGTCCCTTCTTCATCTCCCAATTCTGAAGAAACTTCTCTAAACACGGAGGAAACTGATGAGGTGCAAATTGGTGAGGACACTAGCATCGAGCCACAACTGGAAAGTGTCTCTCTTGAAAATGGCCCTGTTGAGGAGGCCGGGGACTTAGCAGATGTAAGTAAACAAACAGATTCTAACACGGAAGACGAGAAACTATTGTGCACTGAAGAGGAAGATTTGTCCAAAGAAGCTGAAGAATCTGAGCGACACGTGGATGTTCGAGATGGCCAGGTAGACATACAGGCAGAAGATGCAGCTGAAGGATCATGCGGGGATATGGGTACAGGGATAGCAGTGGATGAATCTGTCAGCCCATCATCTGAGCCCAACAATGCTTCGGCTGGAGCTTCACCAGACACAGGTGATATCCATACTGCTGGCTCAACTGGATCCAACGATTCAGGTGCAGAGTTGCATGCCAAGGAAGATTCACAGGATGGACAGAAAACTGATGAGCCCACAACAACAGAGTGA</cdnaseq>

Protein Sequence

<aaseq>MFWRMTGLSAASPVDTILDKENFTLEELLDEDEIIQECKALNTRLINFLRDKAQVEQLLRYIVEEVPEDSEKKRSFKFPFIACEIFTCEIDIILRTLVEDEELMDLLFSFVRPGHPHSTLLAGYFSKVVICLMLRKTSPLMNYVQEHPDIVVHLVDLIGTTSIMEVLIRLIGADETIYSNYADTLQWLENTDVLEMIVDKFSSSDSPEVHANAAEILSAVTRCAPPALAAKICSPSFVGRLFRHALQESRPKSVLVHSLSVCISLLDPKRLASASYQAFRSNLSHGTLVTASPETVDGMLESLGVMPVCCWNTPGIFKLFAKLXQMVPNGMHVAGCLLTCFALHRCLLPGCHCWVLNGRGRPTSLHDRGRDSDDDDFRDRDYDVAALANNLSQAFRYGMYSNDDIEEAQVIERDDEDVYFDDESAEVVISSLRLGDDQDSSSLFTNSNWFTFDGDRGINDRLAASVPSSSPNSEETSLNTEETDEVQIGEDTSIEPQLESVSLENGPVEEAGDLADVSKQTDSNTEDEKLLCTEEEDLSKEAEESERHVDVRDGQVDIQAEDAAEGSCGDMGTGIAVDESVSPSSEPNNASAGASPDTGDIHTAGSTGSNDSGAELHAKEDSQDGQKTDEPTTTE</aaseq>

Gene Sequence

<dnaseqindica>1..39#1079..1182#1548..1634#1724..1799#1915..1989#2153..2206#2686..2745#2830..2946#3120..3214#3333..3535#3898..3952#4185..4298#4797..4938#5103..5129#5364..5434#5510..6098#ATGTTCTGGCGCATGACTGGTCTCTCCGCGGCCTCGCCGGTGAGTCCCTTCTCTTAATTACTCCCATCTCTTCTCTTCTCATCTCATCATGCCCGCCCTTGGGATTGCTATTGTATCGACCGACTACTTCCAATCCTCCCCGTTGCTCTCGCCTTCCCTACCCTACCCTAGGGTTTCAATAGCTGCGGGAGAGCGTGCCTGTTTCTCCTGCGCCTGCGCCTCCGCCTCCTTTCTCCTTCACGCATCCTGCAAGCTGCTCCACCAAATCTGCCAGCTATTGCTTTAGCACCCGCATCTTTCTTTCTTTCTTTTCTTTTCTTTTTTAAAAAAGGGATAATCCATCCCCTTTGTGCATCCGCTTGTTTTTTTTCGATTACAATCCAACAGGTATTTATGAAATCCAATCCAACATGTATTTTAGTCAATATTTCTATCTGATAGCTAAAAAACCTTAACTAGCAAAAGGAGCAATGGACCCAACCATAGTAAAATATATTTCGTTTCTTATGTGGGTGCCGTAATTGCTCTCCTTCACTCGCCCTTTGATGAAATGAAACAAATAGAGCAGGGAGAAAAGCTCCATTGATTAAAAGGGAGTTCGGTAGAATTAGGATGCCACTTCTTTCTAATGCTCTCCTTGCATTTGGAGTTATGACACCTCCTTTAGGAGTATCAACACTTGACCACATCACTCACGTATCACAGGACCTTGCTCTTCTTTCTTGTTTAATCCTTCCTTACAGCCATCCTCTTGTCTTTGGAATGTTTTCATTTGCGCTACTAGCTCGTTATGCTGTATTATTAACTTTTCTTTTACCATGTTGTGTTTTGTGCTAATAGAATTATCATCTGCAATGCTCCGCCTTTCTATTATTCCTAGCTGTAATTCTGTTATTTGCTGCTTGTTTAACAGTAATTTCCTGTGTTTTTTTATTCAGCTTGATCACTGGAATGTGTAAAGCGCTCAATTGCTTTTTTTTTTTAACAAAAAATTCATTTGGGAGACACAAGTGAAATTATTAGTATACTATGGGAACATCTCTACCTAACCCGCCTAACTTTGTAATTTACTGGTCAGGTGGATACAATTCTAGACAAGGAGAACTTCACATTAGAAGAACTTCTTGACGAGGATGAAATAATTCAGGAGTGCAAAGCGCTGAATACTCGTCTCATAAATTTGTAACTTCCTTCCTCACCCTTTATTTTATTTCATTGCTTACTTTCTGCGCTGGAGCTATGGAAGATTTTTTGTATGCCTAAGGAACACTCGCATATCCAACCATGTATGCTGAGTCATTTGATCATTTCATTCCTTCAGACTTCAGAGAGAGATTCTTTTTCTAAAACTGTGTTCTTTTCCCATTGATGTAAGCTTTTCCTTAGCTGGTTCTTAATTAATGATCATTTACATCTGCACTACAAGCATAATGTAAATGTATGAATATGTTGTTATGTGGCTGCATTTGATTGACGATTTTACTGCATGCTGTTTCTTTTACCTTTGTAGTTTCTTTGTTCTTATTATTCTTGAATGTTGTCCCTAGCTTGCGAGACAAGGCTCAAGTGGAGCAATTGCTTCGTTACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAGTATGCATTCTTTTGTCGTTTACCACCAAGTTTTGTAAAATAGCTTGTTGGTGAACCTTGCCTAACTTCAGTTATATAACTCAATGCAGGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTTGAGGACCTTAGTAGAGGATGAAGAGGTAAATATGTTCCCCTGACCCCTATTAACATATTCCTCTCGAGTATTTTATACTCCTCAGGCTGATAAACTTCATTCTAGCTGACCATCTCTTCCATTTCTTGTACTTGATGCAGCTAATGGATTTGCTTTTCTCATTTGTAAGACCTGGTCATCCACATAGCACATTGTTAGCTGGATACTTCAGTAAGGTACTATTTTTCTCCTGTGTTGGTTGTCTCTGAATCATTCTTTGACTTTTAAAGCTATCTGCAGTGGTTTAACTTTAATGTGCTATTATAAATTTGGACACTATTCTTCACACTGTTCATCAGCATACATGGCTTGTGGTCTCAGTTTGATCTCGTACTGTAGGTGGTAATATGTTTGATGCTGAGAAAGACTTCCCCTCTAATGAACTATGTCCAGGTATTGCTCATCTTTCTTACTGAAACATAGGTTGTCGCCAGTATGCTATTATTCTTGGTAATTATGAGCACATTTACTCATATTTTTTGTTTGACAACCTGAAACAACTTCGACTGGATTTGTAGTACTCTCCTCTGAAGCCTGATAGGTCATGAGCTACATTCTGTACGTGTAATTGTGGGTGTAATTTTGTGTGCATCCTGAAGTTTAAAGCTTTTTCTTGCTGATTGGATCTAGAAGTACCATGTGATAGAAAATGTTTTAGAACTATTGGTTCTTCAGTATTGTTTATATTTGCGATCTGCATTCCACTCATTTTATGTTTATAGGTTGCATTCTGTTGTATTTATTCTTTAAGCGGTTTGCACCAATCAAAATGTTAATTCTTACATGTAAGGTTGTGATAAGATACAAGCTTACGAATGCCTGCGTATTTTCCAATTATGGGTGCTCATATTTGTACCCCTTTCATTGTGTAGGAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAGGTCAGCTGTTGTTAAATCCGTTCCATTCCTATTTTTTGCATGTTCATTTCATTTATTGATGCCATGATACTGCTTGTAAAACAGGTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATTATGCTGACACATTGCAGTGGTTAGAAAATACAGATGTACTGGAAATGATTGTGGATAAATTTAGCTCATCTGTAAGTTTCAAAGCTTGAGCACTTACTGACATGCTAAGTACTATAAAATGCCACTAGTTAATACTTAATACTAGTTACTCTCAGTATGGTGCATCTAGAAATATCTGATAAAATATATTGAATATTTTGACTAGAAAAGTGCTTATATATCATACACTATTTTAACCAAGCAGGATTCCCCTGAAGTACACGCCAATGCTGCAGAAATTCTTTCTGCAGTGACTCGATGCGCCCCTCCTGCTCTCGCTGCAAAAATATGCAGCCCAAGGTTTGTGTTTTAGGTTTTACTTAATATTTGATCAGAATGGTAAAATGCCGCACAGACAATTTCCTATGTCAACTATCATATGCATTTTTTTTTGTTTGTTTGTTGCATGCCATTTCAGTTTTGTTGGGAGATTATTTCGTCATGCTCTTCAAGAATCACGCCCCAAATCTGTCCTGGTTCATTCATTATCAGTATGTATATCTTTGTTGGATCCAAAAAGACTAGCGTCAGCCTCATACCAAGCATTTAGAAGTAACTTGAGCCATGGGACATTGGTTACTGCTAGTCCAGAGACAGTTGATGGTATGCTGGAGAGCCTAGGTGAGTGCTCTTTTTTTTTTTGATAGTATTATTAGGCTACTGCTACCTAAGTAGTTTCTCTCTTAGGATCTTAGTTCTATATACTGTAGACAACATCTGTCTTATGGTATATTGTGTTTTTGGTGATTTTTTTAGAGAATCTGTAATATGCATGTCTTCTGCTTACTGATCTACCTGAAATCACATCGTAGGTGATTTGCTGAAGTGGTTGGATATTTCTTCTGTCTGAAAATGTTCACACTTACAACATATGGATGTTTGCAGCCCCCTTTTGGTTATACTCCGCTTGAAGGTATGGCTTCATGTAGTGAGTTTTTGTAATTGATAGTCTGTGTGCATGTTTCTTTATATTTTTGCTGCAGGCGTAATGCCTGTCTGTTGCTGGAATACCCCTGGGATCTTTAAGCTGTTTGCGAAGTGATTTTGACGTGAAAAGCACAAAATGCTTGGCTTGATGGGGTACCCTTGGACTTGACTGTTTGATTGAATGCTTGGCCTGTCGCGGATGTTGCTGGGCCGAAAGTGAATTGTGCTGGATGATGATGGCAATGGCATATGTGCGACTGTGCTGGATGTGGTGCTGAATAATCTGATGCNGTGGTGCNCCTGTGGCATTGAAAGTGCTGCTGTTTTTGTTGATGTGCTGAAGGCTGTNGCAAATGGTGCCAAATGGAATGCATGTTGCTGGTTGCTTGTTGACATGTTTTGCCTTGCACAGGTGCCTGTTGCCTGGTTGCCATTGTTGGGTTTTGAATGGGCGCGGGTATGTTTGTTCCTCCCAGATTGTGGAATTCATCTCTGTTTTGCTGACGATTGGTAGTGAAACTGCGGAACAGGAGCTAATCAACCAATCTGCAGTAAAACGTTCCATTGATTTGTTCTTCCAGTAAGTGGGGCTATTTTATGTGCTCTTCTTCCTAACATTGCAAGAGAATCATCACATATTGGTTCGTGCTGCAGGTACCCTTACAATAACTTTCTGCACCATCATGTCGAGAGTATATCATTTCTTGTCTGGAAGTTAATAGATCCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCAATGAGGTTGAGAACGTTTATCATTGGGCCTGTGGGTAGGTTATCACCATGTTTTGTGATGCTTTTGTGATTGCGTACACTTGTCTTCGCTGACTTTTGGCTATCAATGCTTTGTGCTGCAGTCGTCCGACTTCTCTACATGATCGTGGTAGGGATAGCGATGATGATGACTTCCGAGACAGGGACTATGATGTGGCGGCACTTGCTAATAACCTGAGCCAGGCATTCCGGTATGGAATGTACAGCAATGATGACATTGAAGAGGTGATTGTCTGAACTTGCAGCAGCCTGAGCTTTGGTAGCATGCTAGAATTTACATACCTGAGGAAATGGGCACTGATGTCTTATGCTCTTATTACCTTCACTGATATAGTCCTCTCTAGCATTATGGAACATGTTAGTAATGTGTCAATGTTTGCTTATTGCAGGCACAAGTAATTGAACGAGATGATGAGGTATGTTAAAATGCTGTTTAGGACTTTAGGCTGCATCTGTTATTTGTATTGTCATTTGATCTGCATGTTCAATACTTCCATTGTTAAATGGTTTGTCCTTAAGACTTGTGGTCAGTTAAGTGACTCAAGATTTCGAATCTAGTACTAGTATAACAAGTGTGTTGTGTCCTGATGTCCAGCAAGTATAAATGTATTTTCGATAGTCTGAATTTCTGTGCTCCTGTTTCCTTTCAGGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGTTTGGGTGATGATCAGGACAGGTAATTTTGTTATCGTTTCGTTGTCCTGCCGTTATTACTATTACTTAACTTTCTTATATATTGTGTGTTCTACAGCAGCTCCCTCTTTACGAATTCAAACTGGTTTACCTTTGATGGTGATAGAGGAATAAATGACCGTTTAGCTGCCTCTGTCCCTTCTTCATCTCCCAATTCTGAAGAAACTTCTCTAAACACGGAGGAAACTGATGAGGTGCAAATTGGTGAGGACACTAGCATCGAGCCACAACTGGAAAGTGTCTCTCTTGAAAATGGCCCTGTTGAGGAGGCCGGGGACTTAGCAGATGTAAGTAAACAAACAGATTCTAACACGGAAGACGAGAAACTATTGTGCACTGAAGAGGAAGATTTGTCCAAAGAAGCTGAAGAATCTGAGCGACACGTGGATGTTCGAGATGGCCAGGTAGACATACAGGCAGAAGATGCAGCTGAAGGATCATGCGGGGATATGGGTACAGGGATAGCAGTGGATGAATCTGTCAGCCCATCATCTGAGCCCAACAATGCTTCGGCTGGAGCTTCACCAGACACAGGTGATATCCATACTGCTGGCTCAACTGGATCCAACGATTCAGGTGCAGAGTTGCATGCCAAGGAAGATTCACAGGATGGACAGAAAACTGATGAGCCCACAACAACAGAGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020482