BGIOSGA021001

From RiceWiki
Revision as of 12:55, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA021001| Description = Elongation factor 1-gamma 3| Definition = Oryza sativa Indica Group BGIOSGA021001, complete gene.| tag = | tid = BGI...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA021001

Description

Elongation factor 1-gamma 3

Definition

Oryza sativa Indica Group BGIOSGA021001, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA021001-TA

Ensembl Protein ID

BGIOSGA021001-PA

Length

3387

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:22853013..22856399

Sequence Coding Region

22856391..22856399,22855587..22855736,22855450..22855510,22855314..22855366,22855129..22855230
,22854554..22855049,22854246..22854346,22853013..22853417

Genome Context

<gbrowseImage1> name=IndicaChromosome06:22853013..22856399 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:22853013..22856399 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGCTTGTGTTGCATTGCGGAAGTGGCAACAAAAATGCCTTTAAGGCACTTATTGCTGCAGAGTACACTGGAGTCAAGGTCGAGCTGACCAAGAATTTTGAGATGGGTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCACGCTATGTTGCTCGCTTGAAGGACAACAGCTCTCTTTGTGGTTCTTCTCTTATCGACTATTCTCACATTGAACAATGGATGGACTTCTCAGCAACAGAGGTTGATGCCAATATTGGAAGGTGGTTGTACCCAAGGCTTGGTTTTGGCCCTTATGTTCCTGCACTTGAGGAATTTGCTATTACTTCATTGAAGAGGTCATTGGGTGCTCTGAACACACACCTTGCTTCAAACACATACCTTGTTGGGCATTCAGTTACTCTAGCTGATATTGTGATGACATGTAACCTATATTATGGGTTTGTTCGGATCTTGATCAAGAGTTTCACCTCCGAGTTCCCTCATGTTGAGCGGTACTTCTGGACAATGGTTAACCAGCCCAACTTCAAGAAGGTCATTGGTGATTTCAAGCAAGCAGAGTCTGTGCCTCCCGTTCAGAAAAAGGCTGCTCCCCCTAAGGAATCAAAAGCAAAGGAGGCCAAGAAGGAGGCTCCGAAGGAGGCCCCTAAACCAAAGGTTGAGGCTTCAGAGGAAGAGGAGGCACCAAAGCCAAAGCCAAAGAATCCTCTTGATCTACTGCCACCAAGCAAGATGATTCTTGATGAGTGGAAGAGGCTATACTCAAACACAAAAACCAACTTCCGTGAAATTGCCATTAAAGCTCCAGCTCCAGCTCCACCCCTTCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCGCCAAAACTGGGAGTGGAGTTGGGTGGAGCTCTCTCACAAAATAGACATTATCACGTCTATTTCCCAGGTTTCTGGGACATGTATGACCCAGAGGGTTACTCTCTGTGGTTCTGTGACTACAAGTACAACGATGAGAACACCGTATCGTTTGTGACGATGAACAAGGTCGGTGGGTTCCTGCAGCGGATGGATCTGTGCCGCAAGTATGCTTTTGGCAAGATGCTGGTCATTGGCTCCACACCGCCCTTCAAGGTCAAGGGACTCTGGCTCTTCCGTGGTCAGGACATCCCCAAGTTCGTCATGGATGAGGTCTACGACATGGAGCTCTATGAGTGGACCAAGGTTGACCTCTCTGATGAGGCCCAGAAAGAGCGTGTCAATGCCATGATTGAGGACCAGGAGCCTTTCGAGGGCGAGGACTTGCTGGATGCAAAATGCTTCAAGTGA</cdnaseq>

Protein Sequence

<aaseq>MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPALEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKKAAPPKESKAKEAKKEAPKEAPKPKVEASEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKAPAPAPPLLELELSQTVSAPPKLGVELGGALSQNRHYHVYFPGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK</aaseq>

Gene Sequence

<dnaseqindica>1..9#664..813#890..950#1034..1086#1170..1271#1351..1846#2054..2154#2983..3387#ATGGCGCTTGTGAGTGTCCTCTATCCAATTTCGTTGTTTCCTTGTAGTTTCTGTATGTGCAGTGCGCGTGGCTCAGATTGCCTTTTAAGTAGATGATGTTTGATGCGATTGGGTGTTCATCTGCCTGGATTAGAGGGGATGAGTGCTGCGTTGGTAGATTGATATGATGCGCAATGCGGGTTGTAGGTTCGTGCCTGTGTAGCGTTCCTAGCGTGGATGCAGTTTGCAAGCCACGGGTGTATAGGATTTTCTTTTTGTGTGTGTGTGTGGAGGGTTTGGTTAAATGTTGATGTTGAAGCGATAGGGATCCGCTTAGTTGGTTTGTTTCTTTGGATGATTAGGTCATGTCATTTTAGATTGCCTTCTGGTATACTCGATAGGATTTGTTGACTTGTTCTGAGCTCGTTCGAACTCCATGGTATATTAGTTAGTATCTAGAAATAATATGCTTTTGCATTTCAAATGCTTGATTACGTCAGTATCTATCGACAAATAGTAGTTTTTTTTGCGCTTCAAATGCTTGGTCTTGAGAAATGCTGAATCTGGTTTGGTCATTTAGGTTGGTGGAGCTCTGTTTGTTGCATGTATACTAGTTACTCTACAGGTGGAAATAGATAAATTGCCATTTTCATCACTATATTTCCAATGTTTTTCTTTCTATAGGTGTTGCATTGCGGAAGTGGCAACAAAAATGCCTTTAAGGCACTTATTGCTGCAGAGTACACTGGAGTCAAGGTCGAGCTGACCAAGAATTTTGAGATGGGTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGGTATGCGAATGTAATTTATAATTAGATTTGTCCAATAAAGTGAATCAGGGAGACAGGGACTAATCATTCTTTGCAGATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCACGCTATGGTATGCATGTAGACTTGTATTTTCTTATTCAAATCTACCTTTTCCAGTTCCATACTAACCAGGTTAATCATGTCCTACTTAAGTTGCTCGCTTGAAGGACAACAGCTCTCTTTGTGGTTCTTCTCTTATCGACTATGTGAGTGATGCATCAAGTATTTGTATTATCATGGCAGAGTGAGTTGTAGCCTTGTAGGGCTGATCCGTTGATGATTCTTGCAGTCTCACATTGAACAATGGATGGACTTCTCAGCAACAGAGGTTGATGCCAATATTGGAAGGTGGTTGTACCCAAGGCTTGGTTTTGGCCCTTATGTTCCTGCAGTAAGTTGAATAATTGGTGTATTTCCTTCTCTCTATTGAGCGTTGGCAATCTACGATAATCTAAATATTACATGTGCAGCTTGAGGAATTTGCTATTACTTCATTGAAGAGGTCATTGGGTGCTCTGAACACACACCTTGCTTCAAACACATACCTTGTTGGGCATTCAGTTACTCTAGCTGATATTGTGATGACATGTAACCTATATTATGGGTTTGTTCGGATCTTGATCAAGAGTTTCACCTCCGAGTTCCCTCATGTTGAGCGGTACTTCTGGACAATGGTTAACCAGCCCAACTTCAAGAAGGTCATTGGTGATTTCAAGCAAGCAGAGTCTGTGCCTCCCGTTCAGAAAAAGGCTGCTCCCCCTAAGGAATCAAAAGCAAAGGAGGCCAAGAAGGAGGCTCCGAAGGAGGCCCCTAAACCAAAGGTTGAGGCTTCAGAGGAAGAGGAGGCACCAAAGCCAAAGCCAAAGAATCCTCTTGATCTACTGCCACCAAGCAAGATGATTCTTGATGAGTGGAAGAGGCTATACTCAAACACAAAAACCAACTTCCGTGAAATTGCCATTAAAGGTATTATTTCTATTTTGTTTCAGAATTGCTCTATTTGATATATTAAGTATCTCCTAGCAAGTTGTGTGGGGAGCTTGTTATCATTGGCTGATTTTGTCTAGAAGTGTGAATATATTTTTCTGATCTGTCATTATCCATGGGCATATCAGACTATCAGAGGCTATTCAGTCCTGACTGATTGCTCTCCTTGGGGCCTGTTTGGCACAGCTCCAGCTCCAGCTCCACCCCTTCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCGCCAAAACTGGGAGTGGAGTTGGGTGGAGCTCTCTCACAAAATGTACTAGAGTTGTGGAGCTGGGTTTAGGCAGCTCCACAACTCCACTCCAGACTCAACTCCTGGAGTTATATATAGGAGTTGGAGCTGTACCAAACAGGCCCTTGGTAAATTAGACTTTGACCTAGACCATTCACGTTTAAAATTTAATGGTCTTCAATTACTTTTTTTTATATCAACCTCATTAAGTTTTGCCATTCTAGATTTGCCTAAGTCAAACATTTGTATCAAACTTTCATAATATATATATATTCACATGTTAAACTATGCGAGTTTCTAGAATTTGATGGTTAAAGATAAAAATGTTTGACTTAGGACAAAGCTAGATTGAGATATAATTTGAAACGGATGAAAGTGCAACTATTACTCAAATAGAAAAGAATAATACTGAGTCAACTACTGGTAGCTGCAAAATATTTTGCCCAACTCAGCTGATTTGCAAACATAGACAGAGATCTGCCACCTCTTGCACTAGCTGTTATGCTTTTTGATGTACTTTCCAGACTCTAGCTCACTCGTGACAGCTTCTCATTGGCATGCAGTCATAGCCTTACTTTCCTGCGGGGCAAGCCACCTCCTATGTAATGACTTGCTTTTCTTGGGAAAATCCAAAATTGTTCTTTACCTTTTTTGAGGCATTTATTTAACCAATGTATAGTAAAAATGGCTTTGGATCTTAAACGTGGGTCGGACAATTATTTCTTATTGTCAAGCCAGCTTATATTAGTATACATGTGTATTACTATTTCATTACAGCAGCTTGTTACAATTTTAGCAATATATTTAGGCATGAACTTAATTTATTCCATTTTCTTGTTTTCGAATTAACAGAGACATTATCACGTCTATTTCCCAGGTTTCTGGGACATGTATGACCCAGAGGGTTACTCTCTGTGGTTCTGTGACTACAAGTACAACGATGAGAACACCGTATCGTTTGTGACGATGAACAAGGTCGGTGGGTTCCTGCAGCGGATGGATCTGTGCCGCAAGTATGCTTTTGGCAAGATGCTGGTCATTGGCTCCACACCGCCCTTCAAGGTCAAGGGACTCTGGCTCTTCCGTGGTCAGGACATCCCCAAGTTCGTCATGGATGAGGTCTACGACATGGAGCTCTATGAGTGGACCAAGGTTGACCTCTCTGATGAGGCCCAGAAAGAGCGTGTCAATGCCATGATTGAGGACCAGGAGCCTTTCGAGGGCGAGGACTTGCTGGATGCAAAATGCTTCAAGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA021001

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA021001&oldid=43526"